Wall clock time and date at job start Mon Mar 30 2020 02:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09009 * 110.41669 * 2 1 4 4 C 1.54474 * 110.37449 * 237.69524 * 2 1 3 5 5 C 1.54510 * 104.06496 * 217.18874 * 4 2 1 6 6 H 1.08999 * 110.62569 * 118.69632 * 5 4 2 7 7 N 1.46501 * 110.50952 * 241.35354 * 5 4 2 8 8 C 1.34775 * 119.99628 * 201.09157 * 7 5 4 9 9 O 1.21547 * 120.00326 * 0.02562 * 8 7 5 10 10 C 1.47893 * 119.99785 * 179.97438 * 8 7 5 11 11 C 1.39915 * 120.02249 * 0.02651 * 10 8 7 12 12 C 1.38335 * 120.35552 * 179.97438 * 11 10 8 13 13 C 1.37746 * 120.41163 * 359.97438 * 12 11 10 14 14 C 1.40756 * 120.04126 * 0.02562 * 13 12 11 15 15 C 1.41441 * 120.17565 * 180.27377 * 14 13 12 16 16 H 1.07996 * 119.99433 * 149.96442 * 15 14 13 17 17 C 1.39931 * 120.00065 * 329.96837 * 15 14 13 18 18 N 1.30828 * 119.99887 * 161.80725 * 17 15 14 19 19 Si 1.86802 * 120.00175 * 341.80221 * 17 15 14 20 20 H 1.48503 * 109.47188 * 95.41217 * 19 17 15 21 21 H 1.48498 * 109.47244 * 215.41126 * 19 17 15 22 22 H 1.48498 * 109.47007 * 335.41437 * 19 17 15 23 23 C 1.38994 * 120.02349 * 180.02562 * 10 8 7 24 24 C 1.54480 * 104.06011 * 359.97438 * 5 4 2 25 25 O 1.44419 * 110.37401 * 122.30888 * 2 1 3 26 26 H 1.08999 * 109.46872 * 299.13960 * 1 2 3 27 27 H 1.08996 * 109.47128 * 59.14287 * 1 2 3 28 28 H 1.08998 * 109.46807 * 179.14229 * 1 2 3 29 29 H 1.09001 * 110.51553 * 98.53742 * 4 2 1 30 30 H 1.09001 * 110.51117 * 335.82957 * 4 2 1 31 31 H 0.96997 * 119.99662 * 21.09504 * 7 5 4 32 32 H 1.07996 * 119.82438 * 359.97438 * 11 10 8 33 33 H 1.07999 * 119.79009 * 180.02562 * 12 11 10 34 34 H 1.07998 * 119.97967 * 180.02562 * 13 12 11 35 35 H 0.96999 * 120.00220 * 179.97438 * 18 17 15 36 36 H 1.07997 * 120.20513 * 0.02562 * 23 10 8 37 37 H 1.09001 * 110.37444 * 142.80989 * 24 5 4 38 38 H 1.09000 * 110.37164 * 265.03873 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0216 0.0000 4 6 2.0679 -0.7739 -1.2240 5 6 3.3179 -1.5056 -0.6860 6 1 3.1980 -2.5854 -0.7733 7 7 4.5182 -1.0641 -1.4004 8 6 5.6207 -1.8393 -1.4089 9 8 5.6189 -2.9048 -0.8241 10 6 6.8323 -1.3939 -2.1306 11 6 6.8347 -0.1676 -2.8043 12 6 7.9644 0.2560 -3.4812 13 6 9.0997 -0.5238 -3.4994 14 6 9.1161 -1.7604 -2.8273 15 6 10.2822 -2.5608 -2.8394 16 1 10.5004 -3.2095 -2.0040 17 6 11.1532 -2.5118 -3.9335 18 7 12.3791 -2.9528 -3.8140 19 14 10.5654 -1.8170 -5.5648 20 1 10.9475 -0.3851 -5.6595 21 1 11.1932 -2.5715 -6.6792 22 1 9.0883 -1.9420 -5.6527 23 6 7.9694 -2.1931 -2.1401 24 6 3.3878 -1.0866 0.7993 25 8 2.0328 -0.7236 1.1442 26 1 -0.3633 0.5004 0.8976 27 1 -0.3633 0.5271 -0.8822 28 1 -0.3633 -1.0276 -0.0154 29 1 2.3429 -0.0838 -2.0216 30 1 1.3277 -1.4918 -1.5773 31 1 4.5195 -0.2139 -1.8673 32 1 5.9499 0.4516 -2.7959 33 1 7.9563 1.2044 -3.9978 34 1 9.9779 -0.1861 -4.0296 35 1 12.9827 -2.9192 -4.5725 36 1 7.9719 -3.1406 -1.6218 37 1 3.7246 -1.9216 1.4137 38 1 4.0545 -0.2331 0.9218 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335479804.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:14 Heat of formation + Delta-G solvation = -89.961404 kcal Electronic energy + Delta-G solvation = -20549.619017 eV Core-core repulsion = 17355.411135 eV Total energy + Delta-G solvation = -3194.207882 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.42509 -40.19318 -38.95398 -35.85843 -35.51493 -33.11263 -32.68551 -31.85448 -30.58257 -27.14593 -26.91808 -25.02548 -22.91910 -22.46416 -21.92634 -21.65173 -19.68668 -18.15583 -17.88168 -17.35562 -16.69137 -16.53698 -16.45018 -16.16556 -15.79068 -15.44442 -15.11427 -14.59822 -14.46345 -14.29710 -13.87336 -13.50036 -13.38549 -13.13343 -12.99624 -12.83603 -12.70170 -12.58990 -12.31237 -12.10779 -11.80969 -11.73618 -11.57130 -11.21283 -10.87398 -10.86174 -10.21978 -9.63583 -9.57273 -8.92162 -6.56524 0.15764 0.73805 1.25110 1.41524 1.48250 1.91607 2.04347 2.11838 2.63709 2.95867 3.41761 3.47023 3.70020 3.85029 3.94792 4.11315 4.18918 4.26038 4.40726 4.44810 4.56867 4.61275 4.69713 4.80116 4.86283 4.88542 4.91686 4.96330 5.11485 5.15046 5.30386 5.34951 5.41510 5.63682 5.70526 5.83870 5.85385 6.09814 6.29242 6.52868 6.65110 6.73246 7.18807 8.17069 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.042107 B = 0.003634 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.814193 B = 7702.234069 C = 8055.101895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.061 3.939 3 H 0.084 0.916 4 C -0.147 4.147 5 C 0.111 3.889 6 H 0.082 0.918 7 N -0.700 5.700 8 C 0.564 3.436 9 O -0.583 6.583 10 C -0.114 4.114 11 C -0.180 4.180 12 C -0.082 4.082 13 C -0.225 4.225 14 C 0.065 3.935 15 C -0.490 4.490 16 H 0.048 0.952 17 C 0.044 3.956 18 N -0.850 5.850 19 Si 0.969 3.031 20 H -0.246 1.246 21 H -0.278 1.278 22 H -0.250 1.250 23 C -0.167 4.167 24 C 0.037 3.963 25 O -0.389 6.389 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.059 0.941 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.417 0.583 32 H 0.153 0.847 33 H 0.149 0.851 34 H 0.106 0.894 35 H 0.295 0.705 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.481 11.344 -0.622 23.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.004 3.996 3 H 0.102 0.898 4 C -0.184 4.184 5 C 0.006 3.994 6 H 0.100 0.900 7 N -0.354 5.354 8 C 0.353 3.647 9 O -0.464 6.464 10 C -0.117 4.117 11 C -0.200 4.200 12 C -0.100 4.100 13 C -0.244 4.244 14 C 0.063 3.937 15 C -0.519 4.519 16 H 0.067 0.933 17 C -0.170 4.170 18 N -0.477 5.477 19 Si 0.791 3.209 20 H -0.170 1.170 21 H -0.205 1.205 22 H -0.174 1.174 23 C -0.188 4.188 24 C -0.041 4.041 25 O -0.308 6.308 26 H 0.081 0.919 27 H 0.113 0.887 28 H 0.078 0.922 29 H 0.128 0.872 30 H 0.116 0.884 31 H 0.257 0.743 32 H 0.170 0.830 33 H 0.167 0.833 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.363 10.466 -0.052 22.895 hybrid contribution 0.961 -0.302 -0.428 1.094 sum -19.403 10.164 -0.480 21.909 Atomic orbital electron populations 1.21834 0.91632 1.03116 1.03583 1.23269 0.96616 0.95784 0.83895 0.89842 1.23292 0.95415 1.00574 0.99165 1.22333 0.84976 1.00495 0.91635 0.90000 1.45780 1.11465 1.23709 1.54490 1.18648 0.83769 0.83268 0.79001 1.90702 1.84241 1.24766 1.46677 1.19681 0.93039 0.97325 1.01666 1.21025 0.99899 0.95943 1.03100 1.21059 0.91982 0.99303 0.97645 1.21411 0.99836 0.95565 1.07593 1.17770 0.91604 0.92377 0.91943 1.19469 1.04226 1.23298 1.04955 0.93335 1.26929 0.93145 0.92749 1.04206 1.69727 1.05664 1.37697 1.34568 0.85448 0.80561 0.79237 0.75692 1.17024 1.20476 1.17394 1.21202 0.92824 0.99360 1.05378 1.23764 0.84700 1.00298 0.95330 1.89161 1.26809 1.75096 1.39726 0.91940 0.88739 0.92152 0.87186 0.88361 0.74298 0.83000 0.83341 0.87611 0.89436 0.89391 0.90011 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.52 71.98 0.69 -0.93 16 2 C 0.06 0.92 3.92 31.10 0.12 1.04 16 3 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 4 C -0.15 -2.05 6.39 31.61 0.20 -1.84 16 5 C 0.11 2.49 3.42 46.01 0.16 2.64 16 6 H 0.08 2.21 7.67 -2.39 -0.02 2.19 16 7 N -0.70 -17.24 5.06 -440.54 -2.23 -19.47 16 8 C 0.56 20.54 7.77 86.80 0.67 21.22 16 9 O -0.58 -26.01 16.04 -3.86 -0.06 -26.07 16 10 C -0.11 -4.54 5.87 -20.13 -0.12 -4.66 16 11 C -0.18 -5.76 9.55 22.70 0.22 -5.55 16 12 C -0.08 -2.83 10.01 22.18 0.22 -2.61 16 13 C -0.22 -9.85 7.18 22.77 0.16 -9.69 16 14 C 0.07 3.35 5.10 -21.32 -0.11 3.24 16 15 C -0.49 -28.16 9.57 23.47 0.22 -27.93 16 16 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 17 C 0.04 2.36 5.40 85.25 0.46 2.82 16 18 N -0.85 -47.02 13.93 21.82 0.30 -46.72 16 19 Si 0.97 41.28 24.52 68.60 1.68 42.96 16 20 H -0.25 -9.45 6.71 99.48 0.67 -8.79 16 21 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.25 -10.78 6.87 99.48 0.68 -10.10 16 23 C -0.17 -8.22 9.34 23.01 0.21 -8.01 16 24 C 0.04 0.89 7.35 72.49 0.53 1.42 16 25 O -0.39 -8.86 11.35 -148.98 -1.69 -10.55 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.74 8.12 -2.39 -0.02 0.72 16 29 H 0.11 1.02 7.65 -2.39 -0.02 1.00 16 30 H 0.10 1.22 7.86 -2.39 -0.02 1.20 16 31 H 0.42 7.36 6.33 -92.71 -0.59 6.77 16 32 H 0.15 3.19 6.38 -2.91 -0.02 3.17 16 33 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 34 H 0.11 4.57 4.72 -2.91 -0.01 4.55 16 35 H 0.30 14.52 8.30 -92.71 -0.77 13.75 16 36 H 0.09 4.68 7.64 -2.91 -0.02 4.66 16 37 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.07 1.57 8.06 -2.39 -0.02 1.55 16 Total: -1.00 -69.29 313.37 2.08 -67.21 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.43 Total: 21.46 kcal Atomic # 6 Polarization: -32.47 SS G_CDS: 3.65 Total: -28.82 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: -1.93 Total: -66.19 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -1.75 Total: -36.62 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 1.68 Total: 42.96 kcal Total: -69.29 2.08 -67.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335479804.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.753 kcal (2) G-P(sol) polarization free energy of solvation -69.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds