Wall clock time and date at job start Mon Mar 30 2020 02:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 110.32826 * 2 1 4 4 C 1.54471 * 110.37435 * 122.25540 * 2 1 3 5 5 C 1.54506 * 104.06562 * 142.92444 * 4 2 1 6 6 H 1.09005 * 110.50641 * 241.22042 * 5 4 2 7 7 C 1.50697 * 110.51619 * 118.64383 * 5 4 2 8 8 O 1.21285 * 119.99484 * 1.90468 * 7 5 4 9 9 N 1.34769 * 120.00199 * 181.90350 * 7 5 4 10 10 C 1.37140 * 120.00027 * 354.97318 * 9 7 5 11 11 H 1.07996 * 120.00060 * 334.55072 * 10 9 7 12 12 C 1.38890 * 119.99912 * 154.55177 * 10 9 7 13 13 N 1.31423 * 120.00115 * 156.59437 * 12 10 9 14 14 Si 1.86803 * 119.99835 * 336.59192 * 12 10 9 15 15 H 1.48502 * 109.46964 * 84.83352 * 14 12 10 16 16 H 1.48500 * 109.47193 * 324.83699 * 14 12 10 17 17 H 1.48503 * 109.46944 * 204.83655 * 14 12 10 18 18 C 1.39793 * 120.00177 * 174.97690 * 9 7 5 19 19 C 1.38962 * 120.07644 * 297.96406 * 18 9 7 20 20 C 1.38079 * 119.92109 * 179.74525 * 19 18 9 21 21 C 1.38313 * 120.07930 * 0.52052 * 20 19 18 22 22 C 1.38307 * 120.15183 * 359.72820 * 21 20 19 23 23 C 1.38086 * 120.08175 * 0.02562 * 22 21 20 24 24 C 1.54479 * 104.18304 * 359.92781 * 5 4 2 25 25 O 1.44422 * 110.46590 * 237.69217 * 2 1 3 26 26 H 1.08997 * 109.47687 * 297.74399 * 1 2 3 27 27 H 1.09005 * 109.47321 * 57.74815 * 1 2 3 28 28 H 1.09004 * 109.46970 * 177.74418 * 1 2 3 29 29 H 1.09001 * 110.51286 * 24.27274 * 4 2 1 30 30 H 1.09006 * 110.62647 * 261.62893 * 4 2 1 31 31 H 0.97004 * 119.99683 * 179.97438 * 13 12 10 32 32 H 1.08002 * 120.03713 * 359.97172 * 19 18 9 33 33 H 1.07998 * 119.96120 * 180.25588 * 20 19 18 34 34 H 1.07990 * 119.92334 * 179.74624 * 21 20 19 35 35 H 1.08006 * 119.95627 * 179.97438 * 22 21 20 36 36 H 1.07996 * 120.03851 * 179.97438 * 23 22 21 37 37 H 1.08997 * 110.37077 * 94.92396 * 24 5 4 38 38 H 1.09001 * 110.37144 * 217.26127 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 6 2.0678 -0.7728 1.2246 5 6 3.3195 -1.5026 0.6880 6 1 3.1997 -2.5823 0.7777 7 6 4.5529 -1.0465 1.4240 8 8 4.4579 -0.2399 2.3248 9 7 5.7613 -1.5348 1.0812 10 6 5.8586 -2.5218 0.1341 11 1 5.0259 -3.1872 -0.0399 12 6 7.0280 -2.6659 -0.6012 13 7 7.3206 -3.8236 -1.1502 14 14 8.1849 -1.2141 -0.8099 15 1 9.0951 -1.1343 0.3608 16 1 7.3940 0.0389 -0.9084 17 1 8.9852 -1.3930 -2.0480 18 6 6.9157 -1.0351 1.6911 19 6 7.2582 0.3034 1.5426 20 6 8.3963 0.7947 2.1507 21 6 9.2009 -0.0461 2.8981 22 6 8.8659 -1.3801 3.0438 23 6 7.7264 -1.8771 2.4426 24 6 3.3915 -1.0877 -0.7983 25 8 2.0350 -0.7232 -1.1436 26 1 -0.3634 0.4784 0.9095 27 1 -0.3634 0.5484 -0.8691 28 1 -0.3633 -1.0269 -0.0405 29 1 1.3283 -1.4917 1.5774 30 1 2.3407 -0.0838 2.0240 31 1 8.1372 -3.9240 -1.6641 32 1 6.6329 0.9595 0.9552 33 1 8.6609 1.8358 2.0391 34 1 10.0927 0.3399 3.3693 35 1 9.4967 -2.0339 3.6278 36 1 7.4657 -2.9189 2.5565 37 1 4.0566 -0.2330 -0.9218 38 1 3.7296 -1.9242 -1.4098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335884528.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:51 Heat of formation + Delta-G solvation = -40.118010 kcal Electronic energy + Delta-G solvation = -22046.877262 eV Core-core repulsion = 18854.830752 eV Total energy + Delta-G solvation = -3192.046511 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.23220 -38.91913 -37.36493 -35.04376 -32.20964 -31.86820 -31.44567 -30.38084 -29.03818 -25.65371 -25.17184 -23.20367 -22.04601 -21.50460 -20.64931 -18.92751 -17.98790 -16.97828 -16.00645 -15.52231 -15.36920 -15.05890 -14.89584 -14.63403 -14.02105 -13.77798 -13.27116 -12.97152 -12.86450 -12.72475 -12.72339 -12.15771 -12.13500 -11.79619 -11.62826 -11.14372 -11.01226 -10.82653 -10.63506 -10.59145 -10.51229 -10.29648 -9.99912 -9.41248 -9.36531 -8.90497 -8.49378 -8.31584 -7.74039 -6.63990 -4.19250 1.84949 1.96608 3.11279 3.25324 3.29296 3.48692 4.01363 4.10847 4.34448 4.36033 4.87554 5.02228 5.07866 5.37013 5.41680 5.45025 5.52237 5.57294 5.63809 5.66532 5.80071 5.97808 5.98756 6.02727 6.13031 6.19070 6.30644 6.33128 6.38924 6.45478 6.56076 6.58599 6.86886 7.02058 7.08923 7.19255 7.23323 7.54260 7.82667 8.11991 8.71860 9.13042 9.42303 10.43504 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.021003 B = 0.007199 C = 0.006118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.828996 B = 3888.494694 C = 4575.766200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.068 3.932 3 H 0.064 0.936 4 C -0.143 4.143 5 C -0.118 4.118 6 H 0.101 0.899 7 C 0.485 3.515 8 O -0.578 6.578 9 N -0.418 5.418 10 C -0.358 4.358 11 H 0.116 0.884 12 C 0.079 3.921 13 N -0.846 5.846 14 Si 0.857 3.143 15 H -0.251 1.251 16 H -0.262 1.262 17 H -0.292 1.292 18 C 0.159 3.841 19 C -0.127 4.127 20 C -0.116 4.116 21 C -0.140 4.140 22 C -0.113 4.113 23 C -0.111 4.111 24 C 0.072 3.928 25 O -0.379 6.379 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.278 0.722 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.127 0.873 37 H 0.058 0.942 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.128 5.205 3.207 6.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.011 3.989 3 H 0.082 0.918 4 C -0.181 4.181 5 C -0.140 4.140 6 H 0.120 0.880 7 C 0.276 3.724 8 O -0.461 6.461 9 N -0.133 5.133 10 C -0.483 4.483 11 H 0.133 0.867 12 C -0.131 4.131 13 N -0.479 5.479 14 Si 0.682 3.318 15 H -0.175 1.175 16 H -0.187 1.187 17 H -0.220 1.220 18 C 0.066 3.934 19 C -0.147 4.147 20 C -0.135 4.135 21 C -0.159 4.159 22 C -0.132 4.132 23 C -0.131 4.131 24 C -0.005 4.005 25 O -0.299 6.299 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.115 0.885 31 H 0.089 0.911 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.145 0.855 37 H 0.076 0.924 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.199 5.382 3.310 7.082 hybrid contribution 0.957 0.455 -0.216 1.081 sum -2.242 5.837 3.093 6.976 Atomic orbital electron populations 1.21777 0.93696 1.02645 1.01894 1.22948 0.94731 0.95621 0.85639 0.91792 1.23005 0.95877 1.00142 0.99040 1.22280 0.93080 1.02274 0.96356 0.88048 1.20201 0.84757 0.82040 0.85432 1.90556 1.86327 1.36398 1.32838 1.41537 1.02404 1.34380 1.34937 1.19171 1.04381 1.09547 1.15160 0.86689 1.25152 0.96705 0.96265 0.94944 1.69778 1.24816 1.21943 1.31405 0.87228 0.82133 0.83538 0.78864 1.17486 1.18654 1.21955 1.17674 0.89426 0.92187 0.94070 1.21151 0.97476 0.95343 1.00780 1.20841 0.95115 0.99245 0.98301 1.20943 0.99936 0.94048 1.00955 1.20913 0.96816 0.95421 1.00061 1.21180 0.95427 1.00431 0.96031 1.23287 0.82952 1.00738 0.93542 1.89113 1.28025 1.74493 1.38265 0.91440 0.92274 0.91885 0.90908 0.88495 0.91141 0.86479 0.86521 0.86727 0.86388 0.85456 0.92400 0.87230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.52 37.16 0.35 -1.39 16 2 C 0.07 1.06 3.92 -25.96 -0.10 0.96 16 3 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 4 C -0.14 -2.37 6.21 -25.17 -0.16 -2.52 16 5 C -0.12 -2.27 2.59 -90.21 -0.23 -2.50 16 6 H 0.10 1.90 7.48 -51.93 -0.39 1.51 16 7 C 0.48 10.92 6.71 -10.99 -0.07 10.84 16 8 O -0.58 -14.00 14.84 5.55 0.08 -13.92 16 9 N -0.42 -9.82 2.51 -58.98 -0.15 -9.97 16 10 C -0.36 -8.80 8.00 -14.94 -0.12 -8.92 16 11 H 0.12 2.88 6.53 -52.49 -0.34 2.54 16 12 C 0.08 2.01 5.16 -17.48 -0.09 1.92 16 13 N -0.85 -22.44 13.96 55.49 0.77 -21.66 16 14 Si 0.86 20.13 23.47 -169.99 -3.99 16.14 16 15 H -0.25 -5.78 4.95 56.52 0.28 -5.50 16 16 H -0.26 -6.17 6.29 56.52 0.36 -5.82 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 C 0.16 3.62 2.29 -83.69 -0.19 3.43 16 19 C -0.13 -2.74 5.93 -39.37 -0.23 -2.97 16 20 C -0.12 -2.13 9.53 -39.61 -0.38 -2.51 16 21 C -0.14 -2.40 9.67 -39.53 -0.38 -2.78 16 22 C -0.11 -2.06 9.55 -39.61 -0.38 -2.43 16 23 C -0.11 -2.35 8.35 -39.37 -0.33 -2.68 16 24 C 0.07 1.36 6.16 37.93 0.23 1.59 16 25 O -0.38 -6.84 11.35 -35.23 -0.40 -7.24 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.07 7.87 -51.93 -0.41 0.66 16 30 H 0.10 1.73 6.50 -51.93 -0.34 1.39 16 31 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.12 2.54 7.82 -52.49 -0.41 2.13 16 33 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 34 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.12 1.76 8.06 -52.48 -0.42 1.34 16 36 H 0.13 2.70 8.06 -52.49 -0.42 2.28 16 37 H 0.06 1.15 7.86 -51.93 -0.41 0.75 16 38 H 0.11 2.11 7.49 -51.93 -0.39 1.73 16 LS Contribution 302.74 15.07 4.56 4.56 Total: -1.00 -28.45 302.74 -6.57 -35.02 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.37 Total: 7.03 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -2.08 Total: -9.97 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: 0.63 Total: -31.63 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.32 Total: -21.16 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -3.99 Total: 16.14 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.45 -6.57 -35.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335884528.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.096 kcal (2) G-P(sol) polarization free energy of solvation -28.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds