Wall clock time and date at job start Mon Mar 30 2020 02:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 110.32826 * 2 1 4 4 C 1.54471 * 110.37435 * 122.25540 * 2 1 3 5 5 C 1.54506 * 104.06562 * 142.92444 * 4 2 1 6 6 H 1.09005 * 110.50641 * 241.22042 * 5 4 2 7 7 C 1.50697 * 110.51619 * 118.64383 * 5 4 2 8 8 O 1.21285 * 119.99484 * 1.90468 * 7 5 4 9 9 N 1.34769 * 120.00199 * 181.90350 * 7 5 4 10 10 C 1.37140 * 120.00027 * 354.97318 * 9 7 5 11 11 H 1.07996 * 120.00060 * 334.55072 * 10 9 7 12 12 C 1.38890 * 119.99912 * 154.55177 * 10 9 7 13 13 N 1.31423 * 120.00115 * 156.59437 * 12 10 9 14 14 Si 1.86803 * 119.99835 * 336.59192 * 12 10 9 15 15 H 1.48502 * 109.46964 * 84.83352 * 14 12 10 16 16 H 1.48500 * 109.47193 * 324.83699 * 14 12 10 17 17 H 1.48503 * 109.46944 * 204.83655 * 14 12 10 18 18 C 1.39793 * 120.00177 * 174.97690 * 9 7 5 19 19 C 1.38962 * 120.07644 * 297.96406 * 18 9 7 20 20 C 1.38079 * 119.92109 * 179.74525 * 19 18 9 21 21 C 1.38313 * 120.07930 * 0.52052 * 20 19 18 22 22 C 1.38307 * 120.15183 * 359.72820 * 21 20 19 23 23 C 1.38086 * 120.08175 * 0.02562 * 22 21 20 24 24 C 1.54479 * 104.18304 * 359.92781 * 5 4 2 25 25 O 1.44422 * 110.46590 * 237.69217 * 2 1 3 26 26 H 1.08997 * 109.47687 * 297.74399 * 1 2 3 27 27 H 1.09005 * 109.47321 * 57.74815 * 1 2 3 28 28 H 1.09004 * 109.46970 * 177.74418 * 1 2 3 29 29 H 1.09001 * 110.51286 * 24.27274 * 4 2 1 30 30 H 1.09006 * 110.62647 * 261.62893 * 4 2 1 31 31 H 0.97004 * 119.99683 * 179.97438 * 13 12 10 32 32 H 1.08002 * 120.03713 * 359.97172 * 19 18 9 33 33 H 1.07998 * 119.96120 * 180.25588 * 20 19 18 34 34 H 1.07990 * 119.92334 * 179.74624 * 21 20 19 35 35 H 1.08006 * 119.95627 * 179.97438 * 22 21 20 36 36 H 1.07996 * 120.03851 * 179.97438 * 23 22 21 37 37 H 1.08997 * 110.37077 * 94.92396 * 24 5 4 38 38 H 1.09001 * 110.37144 * 217.26127 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 6 2.0678 -0.7728 1.2246 5 6 3.3195 -1.5026 0.6880 6 1 3.1997 -2.5823 0.7777 7 6 4.5529 -1.0465 1.4240 8 8 4.4579 -0.2399 2.3248 9 7 5.7613 -1.5348 1.0812 10 6 5.8586 -2.5218 0.1341 11 1 5.0259 -3.1872 -0.0399 12 6 7.0280 -2.6659 -0.6012 13 7 7.3206 -3.8236 -1.1502 14 14 8.1849 -1.2141 -0.8099 15 1 9.0951 -1.1343 0.3608 16 1 7.3940 0.0389 -0.9084 17 1 8.9852 -1.3930 -2.0480 18 6 6.9157 -1.0351 1.6911 19 6 7.2582 0.3034 1.5426 20 6 8.3963 0.7947 2.1507 21 6 9.2009 -0.0461 2.8981 22 6 8.8659 -1.3801 3.0438 23 6 7.7264 -1.8771 2.4426 24 6 3.3915 -1.0877 -0.7983 25 8 2.0350 -0.7232 -1.1436 26 1 -0.3634 0.4784 0.9095 27 1 -0.3634 0.5484 -0.8691 28 1 -0.3633 -1.0269 -0.0405 29 1 1.3283 -1.4917 1.5774 30 1 2.3407 -0.0838 2.0240 31 1 8.1372 -3.9240 -1.6641 32 1 6.6329 0.9595 0.9552 33 1 8.6609 1.8358 2.0391 34 1 10.0927 0.3399 3.3693 35 1 9.4967 -2.0339 3.6278 36 1 7.4657 -2.9189 2.5565 37 1 4.0566 -0.2330 -0.9218 38 1 3.7296 -1.9242 -1.4098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335884528.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:51 Heat of formation + Delta-G solvation = -57.361981 kcal Electronic energy + Delta-G solvation = -22047.625017 eV Core-core repulsion = 18854.830752 eV Total energy + Delta-G solvation = -3192.794265 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.89178 -40.39176 -38.95740 -36.83295 -34.11464 -33.30590 -32.77621 -31.89091 -30.57548 -27.14049 -26.88228 -24.79966 -23.56216 -22.95731 -22.03048 -20.71837 -19.65132 -18.62503 -17.65911 -17.08379 -16.93928 -16.54737 -16.49965 -16.19073 -15.63648 -15.28050 -14.91557 -14.76364 -14.37980 -14.34484 -14.08034 -13.87020 -13.39428 -13.12831 -12.92754 -12.86999 -12.60873 -12.44163 -12.24923 -12.16668 -11.85533 -11.78218 -11.69146 -11.21522 -10.79774 -10.67604 -10.32658 -9.84817 -9.40614 -8.60202 -6.15091 0.31506 0.44028 1.23855 1.34654 1.39444 1.70395 2.19487 2.38421 2.74462 2.92710 3.06012 3.59526 3.79750 3.86968 3.99491 4.05320 4.11805 4.20983 4.24572 4.34886 4.46934 4.52228 4.64288 4.68717 4.72529 4.79484 4.90565 4.98965 5.07799 5.09634 5.10492 5.29051 5.30427 5.47610 5.54229 5.58509 5.84077 5.91503 5.97580 6.28969 6.81826 7.26207 7.60699 8.50310 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.021003 B = 0.007199 C = 0.006118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.828996 B = 3888.494694 C = 4575.766200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.063 3.937 3 H 0.062 0.938 4 C -0.135 4.135 5 C -0.120 4.120 6 H 0.103 0.897 7 C 0.481 3.519 8 O -0.599 6.599 9 N -0.427 5.427 10 C -0.348 4.348 11 H 0.102 0.898 12 C 0.049 3.951 13 N -0.881 5.881 14 Si 0.901 3.099 15 H -0.240 1.240 16 H -0.270 1.270 17 H -0.298 1.298 18 C 0.124 3.876 19 C -0.149 4.149 20 C -0.116 4.116 21 C -0.128 4.128 22 C -0.110 4.110 23 C -0.133 4.133 24 C 0.081 3.919 25 O -0.385 6.385 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.280 0.720 32 H 0.102 0.898 33 H 0.152 0.848 34 H 0.163 0.837 35 H 0.154 0.846 36 H 0.114 0.886 37 H 0.042 0.958 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.502 6.507 4.421 8.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.006 3.994 3 H 0.080 0.920 4 C -0.173 4.173 5 C -0.141 4.141 6 H 0.121 0.879 7 C 0.272 3.728 8 O -0.483 6.483 9 N -0.142 5.142 10 C -0.474 4.474 11 H 0.120 0.880 12 C -0.157 4.157 13 N -0.516 5.516 14 Si 0.726 3.274 15 H -0.164 1.164 16 H -0.195 1.195 17 H -0.226 1.226 18 C 0.032 3.968 19 C -0.169 4.169 20 C -0.134 4.134 21 C -0.146 4.146 22 C -0.129 4.129 23 C -0.153 4.153 24 C 0.003 3.997 25 O -0.305 6.305 26 H 0.108 0.892 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.121 0.879 33 H 0.170 0.830 34 H 0.180 0.820 35 H 0.171 0.829 36 H 0.132 0.868 37 H 0.061 0.939 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.570 6.694 4.536 8.485 hybrid contribution 0.766 0.115 -0.480 0.911 sum -1.804 6.809 4.057 8.128 Atomic orbital electron populations 1.21781 0.90598 1.03424 1.03537 1.23179 0.97118 0.94963 0.84166 0.91998 1.22993 0.95048 1.00218 0.99031 1.22332 0.92908 1.02635 0.96229 0.87871 1.20700 0.85362 0.81621 0.85098 1.90522 1.86734 1.37346 1.33742 1.41612 1.03295 1.34366 1.34950 1.19060 1.03770 1.09122 1.15418 0.88026 1.25529 0.97816 0.97395 0.94991 1.69825 1.25714 1.23057 1.33030 0.86532 0.80911 0.81360 0.78553 1.16405 1.19511 1.22615 1.18004 0.89766 0.93275 0.95732 1.21241 0.98972 0.94691 1.02025 1.21323 0.93742 1.01284 0.97092 1.21512 1.00656 0.93212 0.99220 1.21384 0.95729 0.96705 0.99033 1.21296 0.96904 0.99878 0.97241 1.23057 0.83541 0.99737 0.93330 1.89108 1.27117 1.74839 1.39439 0.89182 0.91346 0.91473 0.88596 0.89687 0.90983 0.87949 0.83049 0.81993 0.82852 0.86756 0.93935 0.88097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.52 71.98 0.69 -2.31 16 2 C 0.06 1.90 3.92 31.09 0.12 2.02 16 3 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 4 C -0.14 -4.39 6.21 31.61 0.20 -4.19 16 5 C -0.12 -4.67 2.59 -10.53 -0.03 -4.70 16 6 H 0.10 3.96 7.48 -2.38 -0.02 3.94 16 7 C 0.48 22.18 6.71 87.66 0.59 22.77 16 8 O -0.60 -29.54 14.84 -3.04 -0.05 -29.58 16 9 N -0.43 -20.59 2.51 -458.90 -1.15 -21.74 16 10 C -0.35 -17.69 8.00 84.02 0.67 -17.01 16 11 H 0.10 5.32 6.53 -2.91 -0.02 5.30 16 12 C 0.05 2.56 5.16 84.91 0.44 2.99 16 13 N -0.88 -47.78 13.96 21.65 0.30 -47.48 16 14 Si 0.90 41.99 23.47 68.60 1.61 43.60 16 15 H -0.24 -10.63 4.95 99.48 0.49 -10.14 16 16 H -0.27 -12.76 6.29 99.48 0.63 -12.14 16 17 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 18 C 0.12 5.65 2.29 38.22 0.09 5.74 16 19 C -0.15 -6.30 5.93 22.41 0.13 -6.17 16 20 C -0.12 -3.89 9.53 22.25 0.21 -3.68 16 21 C -0.13 -3.81 9.67 22.30 0.22 -3.59 16 22 C -0.11 -3.65 9.55 22.25 0.21 -3.44 16 23 C -0.13 -5.58 8.35 22.41 0.19 -5.39 16 24 C 0.08 3.14 6.16 72.48 0.45 3.59 16 25 O -0.39 -13.78 11.35 -148.98 -1.69 -15.47 16 26 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 28 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.10 2.65 7.87 -2.39 -0.02 2.63 16 30 H 0.08 3.00 6.50 -2.38 -0.02 2.99 16 31 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.10 4.51 7.82 -2.91 -0.02 4.48 16 33 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 34 H 0.16 3.33 8.06 -2.92 -0.02 3.31 16 35 H 0.15 3.92 8.06 -2.91 -0.02 3.89 16 36 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 37 H 0.04 1.77 7.86 -2.39 -0.02 1.75 16 38 H 0.10 4.06 7.49 -2.39 -0.02 4.05 16 Total: -1.00 -62.51 302.74 3.95 -58.57 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.75 Total: 25.46 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 4.17 Total: -13.36 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: -0.85 Total: -69.22 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -1.74 Total: -45.05 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.61 Total: 43.60 kcal Total: -62.51 3.95 -58.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335884528.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.204 kcal (2) G-P(sol) polarization free energy of solvation -62.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds