Wall clock time and date at job start Mon Mar 30 2020 02:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.41845 * 2 1 4 4 C 1.54477 * 110.36920 * 237.69037 * 2 1 3 5 5 C 1.54511 * 104.18116 * 217.25885 * 4 2 1 6 6 H 1.09000 * 110.51509 * 118.57888 * 5 4 2 7 7 C 1.50708 * 110.50930 * 241.15041 * 5 4 2 8 8 O 1.21278 * 119.99865 * 359.97438 * 7 5 4 9 9 N 1.34776 * 119.99623 * 179.97438 * 7 5 4 10 10 C 1.37141 * 120.00197 * 355.95016 * 9 7 5 11 11 H 1.07999 * 120.00452 * 347.92303 * 10 9 7 12 12 C 1.38889 * 119.99904 * 167.92563 * 10 9 7 13 13 N 1.31423 * 120.00138 * 344.74163 * 12 10 9 14 14 Si 1.86796 * 120.00281 * 164.75039 * 12 10 9 15 15 H 1.48504 * 109.46824 * 359.97438 * 14 12 10 16 16 H 1.48491 * 109.47695 * 119.99451 * 14 12 10 17 17 H 1.48506 * 109.46905 * 239.99973 * 14 12 10 18 18 C 1.39790 * 119.99735 * 175.94439 * 9 7 5 19 19 C 1.38964 * 120.07410 * 104.02666 * 18 9 7 20 20 C 1.38079 * 119.91908 * 179.79402 * 19 18 9 21 21 C 1.38311 * 120.07683 * 0.46165 * 20 19 18 22 22 C 1.38302 * 120.15771 * 359.79099 * 21 20 19 23 23 C 1.38082 * 120.07862 * 359.97438 * 22 21 20 24 24 C 1.54485 * 104.06350 * 359.92892 * 5 4 2 25 25 O 1.44423 * 104.80174 * 23.98234 * 24 5 4 26 26 H 1.08999 * 109.47470 * 182.31376 * 1 2 3 27 27 H 1.09004 * 109.46915 * 302.31353 * 1 2 3 28 28 H 1.09001 * 109.47398 * 62.30885 * 1 2 3 29 29 H 1.08997 * 110.51269 * 98.54748 * 4 2 1 30 30 H 1.08999 * 110.51408 * 335.96983 * 4 2 1 31 31 H 0.97001 * 120.00266 * 185.01580 * 13 12 10 32 32 H 1.08001 * 120.03777 * 0.02562 * 19 18 9 33 33 H 1.07996 * 119.96566 * 180.23210 * 20 19 18 34 34 H 1.08007 * 119.91894 * 179.77012 * 21 20 19 35 35 H 1.08008 * 119.96303 * 179.97438 * 22 21 20 36 36 H 1.08000 * 120.03956 * 179.97438 * 23 22 21 37 37 H 1.08997 * 110.36673 * 142.80870 * 24 5 4 38 38 H 1.08993 * 110.37029 * 265.14970 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0677 -0.7740 -1.2240 5 6 3.3172 -1.5084 -0.6884 6 1 3.1928 -2.5877 -0.7761 7 6 4.5513 -1.0586 -1.4274 8 8 4.4626 -0.2278 -2.3064 9 7 5.7533 -1.5798 -1.1114 10 6 5.8664 -2.4567 -0.0630 11 1 5.0455 -2.5816 0.6275 12 6 7.0367 -3.1841 0.1107 13 7 7.9093 -3.2689 -0.8684 14 14 7.3706 -4.0423 1.7359 15 1 6.2414 -3.7938 2.6680 16 1 7.5102 -5.5025 1.5053 17 1 8.6255 -3.5122 2.3270 18 6 6.8849 -1.2266 -1.8523 19 6 7.8088 -0.3307 -1.3280 20 6 8.9275 0.0127 -2.0609 21 6 9.1242 -0.5265 -3.3193 22 6 8.2040 -1.4144 -3.8463 23 6 7.0855 -1.7660 -3.1171 24 6 3.3901 -1.0909 0.7972 25 8 2.0368 -0.7251 1.1444 26 1 -0.3634 -1.0268 0.0415 27 1 -0.3633 0.5494 0.8686 28 1 -0.3634 0.4776 -0.9100 29 1 2.3429 -0.0840 -2.0215 30 1 1.3266 -1.4903 -1.5787 31 1 8.6910 -3.8354 -0.7738 32 1 7.6539 0.0935 -0.3470 33 1 9.6480 0.7059 -1.6527 34 1 9.9983 -0.2533 -3.8919 35 1 8.3605 -1.8332 -4.8295 36 1 6.3671 -2.4591 -3.5294 37 1 3.7263 -1.9271 1.4102 38 1 4.0570 -0.2375 0.9191 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335884529.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:54 Heat of formation + Delta-G solvation = -42.226393 kcal Electronic energy + Delta-G solvation = -21885.850747 eV Core-core repulsion = 18693.712810 eV Total energy + Delta-G solvation = -3192.137937 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.95688 -38.60434 -37.00926 -34.85360 -31.89007 -31.75724 -31.37693 -29.88744 -28.69188 -25.68001 -25.11495 -22.98468 -21.53710 -21.38445 -20.50702 -19.06129 -17.77539 -16.88683 -15.73136 -15.45348 -15.02104 -14.91404 -14.72016 -14.41530 -14.07152 -13.58398 -13.23607 -12.83857 -12.66787 -12.43856 -12.20594 -11.88294 -11.73135 -11.56810 -11.47393 -11.22713 -10.93816 -10.81407 -10.51913 -10.43253 -10.37313 -10.26060 -10.18807 -9.49660 -9.38363 -8.65453 -8.24238 -7.86287 -7.56240 -6.29641 -4.07769 2.46899 2.50449 3.02649 3.15235 3.17314 3.63846 3.94170 4.19072 4.57892 4.83862 4.99625 5.05420 5.10185 5.41485 5.53629 5.59659 5.68564 5.79166 5.81412 5.88421 5.97651 5.99891 6.15589 6.19525 6.26131 6.35372 6.41969 6.44451 6.55059 6.58815 6.81791 7.04261 7.15802 7.30683 7.35193 7.45066 7.56987 7.73635 7.95416 8.36801 8.91991 9.28443 9.70698 10.54144 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.016616 B = 0.007353 C = 0.005555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.735083 B = 3806.909427 C = 5039.685889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.069 3.931 3 H 0.066 0.934 4 C -0.141 4.141 5 C -0.119 4.119 6 H 0.100 0.900 7 C 0.468 3.532 8 O -0.592 6.592 9 N -0.410 5.410 10 C -0.360 4.360 11 H 0.110 0.890 12 C 0.044 3.956 13 N -0.845 5.845 14 Si 0.919 3.081 15 H -0.266 1.266 16 H -0.280 1.280 17 H -0.278 1.278 18 C 0.247 3.753 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.148 4.148 22 C -0.118 4.118 23 C -0.081 4.081 24 C 0.064 3.936 25 O -0.381 6.381 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.272 0.728 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.584 2.425 0.523 5.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.011 3.989 3 H 0.084 0.916 4 C -0.179 4.179 5 C -0.141 4.141 6 H 0.118 0.882 7 C 0.258 3.742 8 O -0.478 6.478 9 N -0.125 5.125 10 C -0.485 4.485 11 H 0.128 0.872 12 C -0.164 4.164 13 N -0.480 5.480 14 Si 0.745 3.255 15 H -0.191 1.191 16 H -0.206 1.206 17 H -0.204 1.204 18 C 0.156 3.844 19 C -0.138 4.138 20 C -0.138 4.138 21 C -0.167 4.167 22 C -0.137 4.137 23 C -0.101 4.101 24 C -0.013 4.013 25 O -0.300 6.300 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.504 2.714 0.292 5.267 hybrid contribution 0.666 -0.842 0.717 1.291 sum -3.838 1.873 1.009 4.388 Atomic orbital electron populations 1.21777 0.93703 1.02598 1.01923 1.23011 0.94667 0.95676 0.85525 0.91638 1.22976 0.95834 1.00083 0.99033 1.22287 0.93787 1.02160 0.95850 0.88181 1.19835 0.83998 0.84823 0.85545 1.90543 1.85789 1.36332 1.35119 1.41347 1.03761 1.39054 1.28367 1.19887 1.02842 1.20920 1.04882 0.87238 1.25278 0.95805 0.96922 0.98386 1.69908 1.12288 1.35800 1.29958 0.85987 0.78946 0.78803 0.81773 1.19060 1.20595 1.20408 1.17042 0.86654 0.90940 0.89751 1.20909 0.95042 0.98604 0.99241 1.20646 0.97274 1.00770 0.95093 1.20710 0.99335 1.00290 0.96316 1.20656 0.95002 0.98998 0.99007 1.20777 0.96946 0.97885 0.94446 1.23450 0.83514 1.00353 0.93961 1.89098 1.27905 1.74529 1.38492 0.91932 0.92308 0.91370 0.88378 0.91064 0.91622 0.87659 0.87708 0.87833 0.87663 0.87928 0.87918 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.52 37.16 0.35 -1.38 16 2 C 0.07 1.07 3.93 -25.95 -0.10 0.97 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.14 -2.39 6.21 -25.16 -0.16 -2.54 16 5 C -0.12 -2.31 2.61 -90.20 -0.24 -2.54 16 6 H 0.10 1.89 8.11 -51.93 -0.42 1.47 16 7 C 0.47 10.94 6.86 -10.98 -0.08 10.87 16 8 O -0.59 -15.17 15.24 5.56 0.08 -15.08 16 9 N -0.41 -10.01 2.66 -58.97 -0.16 -10.17 16 10 C -0.36 -8.60 8.88 -14.94 -0.13 -8.74 16 11 H 0.11 2.42 4.31 -52.49 -0.23 2.20 16 12 C 0.04 1.06 5.22 -17.49 -0.09 0.97 16 13 N -0.84 -21.32 10.22 55.49 0.57 -20.75 16 14 Si 0.92 18.87 29.58 -169.99 -5.03 13.85 16 15 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 16 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 17 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 18 C 0.25 6.06 2.25 -83.69 -0.19 5.88 16 19 C -0.12 -2.73 9.52 -39.37 -0.37 -3.11 16 20 C -0.12 -2.42 10.04 -39.61 -0.40 -2.82 16 21 C -0.15 -2.88 10.04 -39.53 -0.40 -3.27 16 22 C -0.12 -2.42 10.04 -39.62 -0.40 -2.82 16 23 C -0.08 -1.91 8.99 -39.37 -0.35 -2.26 16 24 C 0.06 1.17 5.95 37.94 0.23 1.40 16 25 O -0.38 -6.70 11.35 -35.23 -0.40 -7.10 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.10 1.81 6.50 -51.93 -0.34 1.48 16 30 H 0.07 1.06 7.87 -51.93 -0.41 0.65 16 31 H 0.27 6.65 8.32 -40.82 -0.34 6.31 16 32 H 0.11 2.39 8.06 -52.49 -0.42 1.97 16 33 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 35 H 0.11 1.85 8.06 -52.48 -0.42 1.43 16 36 H 0.10 2.44 8.06 -52.49 -0.42 2.02 16 37 H 0.10 1.82 6.40 -51.93 -0.33 1.49 16 38 H 0.06 1.17 7.86 -51.93 -0.41 0.76 16 LS Contribution 312.67 15.07 4.71 4.71 Total: -1.00 -28.19 312.67 -7.62 -35.81 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.07 Total: 8.15 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -2.32 Total: -9.41 kcal Atomic # 7 Polarization: -31.33 SS G_CDS: 0.41 Total: -30.92 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.32 Total: -22.18 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.19 -7.62 -35.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335884529.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.418 kcal (2) G-P(sol) polarization free energy of solvation -28.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds