Wall clock time and date at job start Mon Mar 30 2020 02:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.41845 * 2 1 4 4 C 1.54477 * 110.36920 * 237.69037 * 2 1 3 5 5 C 1.54511 * 104.18116 * 217.25885 * 4 2 1 6 6 H 1.09000 * 110.51509 * 118.57888 * 5 4 2 7 7 C 1.50708 * 110.50930 * 241.15041 * 5 4 2 8 8 O 1.21278 * 119.99865 * 359.97438 * 7 5 4 9 9 N 1.34776 * 119.99623 * 179.97438 * 7 5 4 10 10 C 1.37141 * 120.00197 * 355.95016 * 9 7 5 11 11 H 1.07999 * 120.00452 * 347.92303 * 10 9 7 12 12 C 1.38889 * 119.99904 * 167.92563 * 10 9 7 13 13 N 1.31423 * 120.00138 * 344.74163 * 12 10 9 14 14 Si 1.86796 * 120.00281 * 164.75039 * 12 10 9 15 15 H 1.48504 * 109.46824 * 359.97438 * 14 12 10 16 16 H 1.48491 * 109.47695 * 119.99451 * 14 12 10 17 17 H 1.48506 * 109.46905 * 239.99973 * 14 12 10 18 18 C 1.39790 * 119.99735 * 175.94439 * 9 7 5 19 19 C 1.38964 * 120.07410 * 104.02666 * 18 9 7 20 20 C 1.38079 * 119.91908 * 179.79402 * 19 18 9 21 21 C 1.38311 * 120.07683 * 0.46165 * 20 19 18 22 22 C 1.38302 * 120.15771 * 359.79099 * 21 20 19 23 23 C 1.38082 * 120.07862 * 359.97438 * 22 21 20 24 24 C 1.54485 * 104.06350 * 359.92892 * 5 4 2 25 25 O 1.44423 * 104.80174 * 23.98234 * 24 5 4 26 26 H 1.08999 * 109.47470 * 182.31376 * 1 2 3 27 27 H 1.09004 * 109.46915 * 302.31353 * 1 2 3 28 28 H 1.09001 * 109.47398 * 62.30885 * 1 2 3 29 29 H 1.08997 * 110.51269 * 98.54748 * 4 2 1 30 30 H 1.08999 * 110.51408 * 335.96983 * 4 2 1 31 31 H 0.97001 * 120.00266 * 185.01580 * 13 12 10 32 32 H 1.08001 * 120.03777 * 0.02562 * 19 18 9 33 33 H 1.07996 * 119.96566 * 180.23210 * 20 19 18 34 34 H 1.08007 * 119.91894 * 179.77012 * 21 20 19 35 35 H 1.08008 * 119.96303 * 179.97438 * 22 21 20 36 36 H 1.08000 * 120.03956 * 179.97438 * 23 22 21 37 37 H 1.08997 * 110.36673 * 142.80870 * 24 5 4 38 38 H 1.08993 * 110.37029 * 265.14970 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0677 -0.7740 -1.2240 5 6 3.3172 -1.5084 -0.6884 6 1 3.1928 -2.5877 -0.7761 7 6 4.5513 -1.0586 -1.4274 8 8 4.4626 -0.2278 -2.3064 9 7 5.7533 -1.5798 -1.1114 10 6 5.8664 -2.4567 -0.0630 11 1 5.0455 -2.5816 0.6275 12 6 7.0367 -3.1841 0.1107 13 7 7.9093 -3.2689 -0.8684 14 14 7.3706 -4.0423 1.7359 15 1 6.2414 -3.7938 2.6680 16 1 7.5102 -5.5025 1.5053 17 1 8.6255 -3.5122 2.3270 18 6 6.8849 -1.2266 -1.8523 19 6 7.8088 -0.3307 -1.3280 20 6 8.9275 0.0127 -2.0609 21 6 9.1242 -0.5265 -3.3193 22 6 8.2040 -1.4144 -3.8463 23 6 7.0855 -1.7660 -3.1171 24 6 3.3901 -1.0909 0.7972 25 8 2.0368 -0.7251 1.1444 26 1 -0.3634 -1.0268 0.0415 27 1 -0.3633 0.5494 0.8686 28 1 -0.3634 0.4776 -0.9100 29 1 2.3429 -0.0840 -2.0215 30 1 1.3266 -1.4903 -1.5787 31 1 8.6910 -3.8354 -0.7738 32 1 7.6539 0.0935 -0.3470 33 1 9.6480 0.7059 -1.6527 34 1 9.9983 -0.2533 -3.8919 35 1 8.3605 -1.8332 -4.8295 36 1 6.3671 -2.4591 -3.5294 37 1 3.7263 -1.9271 1.4102 38 1 4.0570 -0.2375 0.9191 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335884529.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:54 Heat of formation + Delta-G solvation = -57.391725 kcal Electronic energy + Delta-G solvation = -21886.508365 eV Core-core repulsion = 18693.712810 eV Total energy + Delta-G solvation = -3192.795555 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.61653 -40.14310 -38.68650 -36.66360 -33.60818 -33.25604 -32.74999 -31.56489 -30.33362 -27.05352 -26.86796 -24.61110 -23.22329 -22.83856 -21.96332 -20.82687 -19.47263 -18.51987 -17.36703 -16.94004 -16.58917 -16.54799 -16.37423 -16.01304 -15.68103 -15.21530 -14.84004 -14.45285 -14.11508 -14.01965 -13.57481 -13.31976 -13.20529 -13.12745 -12.92015 -12.86845 -12.53977 -12.33965 -12.07273 -11.99483 -11.96026 -11.73631 -11.67625 -11.27760 -10.77954 -10.48853 -10.05763 -9.55885 -9.30555 -8.10394 -5.95316 0.78344 0.81775 1.36923 1.46861 1.57299 1.86318 2.23717 2.68137 3.04596 3.09575 3.25779 3.62550 3.82736 4.00064 4.13053 4.22572 4.25400 4.28083 4.38631 4.42164 4.51935 4.68416 4.73631 4.78095 4.88963 4.90249 5.01499 5.10412 5.11752 5.14807 5.30041 5.36184 5.45190 5.65512 5.78636 5.81622 5.85545 6.00466 6.25471 6.57170 7.07028 7.47231 7.88722 8.71435 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.016616 B = 0.007353 C = 0.005555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.735083 B = 3806.909427 C = 5039.685889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.065 3.935 3 H 0.061 0.939 4 C -0.136 4.136 5 C -0.118 4.118 6 H 0.104 0.896 7 C 0.457 3.543 8 O -0.624 6.624 9 N -0.419 5.419 10 C -0.373 4.373 11 H 0.123 0.877 12 C 0.004 3.996 13 N -0.868 5.868 14 Si 0.981 3.019 15 H -0.253 1.253 16 H -0.280 1.280 17 H -0.284 1.284 18 C 0.220 3.780 19 C -0.144 4.144 20 C -0.117 4.117 21 C -0.143 4.143 22 C -0.117 4.117 23 C -0.110 4.110 24 C 0.073 3.927 25 O -0.384 6.384 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.269 0.731 32 H 0.096 0.904 33 H 0.138 0.862 34 H 0.147 0.853 35 H 0.135 0.865 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.595 2.424 0.989 5.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.008 3.992 3 H 0.079 0.921 4 C -0.174 4.174 5 C -0.140 4.140 6 H 0.122 0.878 7 C 0.248 3.752 8 O -0.512 6.512 9 N -0.133 5.133 10 C -0.498 4.498 11 H 0.141 0.859 12 C -0.202 4.202 13 N -0.503 5.503 14 Si 0.805 3.195 15 H -0.176 1.176 16 H -0.206 1.206 17 H -0.210 1.210 18 C 0.129 3.871 19 C -0.164 4.164 20 C -0.135 4.135 21 C -0.161 4.161 22 C -0.136 4.136 23 C -0.129 4.129 24 C -0.004 4.004 25 O -0.303 6.303 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.156 0.844 34 H 0.164 0.836 35 H 0.153 0.847 36 H 0.102 0.898 37 H 0.127 0.873 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.529 2.714 0.763 5.335 hybrid contribution 0.717 -0.796 0.491 1.178 sum -3.812 1.918 1.254 4.448 Atomic orbital electron populations 1.21776 0.90610 1.03450 1.03490 1.23191 0.97036 0.94889 0.84061 0.92107 1.22964 0.95235 1.00113 0.99078 1.22314 0.92918 1.02489 0.96273 0.87833 1.20518 0.84860 0.84376 0.85481 1.90499 1.86405 1.37727 1.36597 1.41606 1.04273 1.38997 1.28467 1.20295 1.03530 1.20917 1.05074 0.85926 1.26062 0.95503 0.97562 1.01033 1.70066 1.12468 1.36324 1.31465 0.85037 0.78717 0.77450 0.78306 1.17621 1.20602 1.20971 1.17371 0.87295 0.91987 0.90437 1.21041 0.96363 0.99461 0.99552 1.21070 0.96618 1.00588 0.95255 1.21179 1.00042 0.98833 0.96067 1.21049 0.93905 0.98671 0.99930 1.20831 0.98236 0.98855 0.94994 1.23280 0.83964 0.99928 0.93268 1.89096 1.27166 1.74751 1.39320 0.91378 0.91222 0.89418 0.90250 0.88806 0.92019 0.88567 0.84430 0.83563 0.84721 0.89815 0.87293 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.52 71.98 0.69 -2.28 16 2 C 0.07 1.96 3.93 31.10 0.12 2.08 16 3 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 4 C -0.14 -4.54 6.21 31.61 0.20 -4.34 16 5 C -0.12 -4.62 2.61 -10.52 -0.03 -4.65 16 6 H 0.10 3.93 8.11 -2.39 -0.02 3.91 16 7 C 0.46 22.07 6.86 87.66 0.60 22.67 16 8 O -0.62 -33.28 15.24 -3.02 -0.05 -33.33 16 9 N -0.42 -21.11 2.66 -458.89 -1.22 -22.33 16 10 C -0.37 -18.10 8.88 84.02 0.75 -17.36 16 11 H 0.12 5.44 4.31 -2.91 -0.01 5.42 16 12 C 0.00 0.17 5.22 84.91 0.44 0.62 16 13 N -0.87 -44.38 10.22 21.65 0.22 -44.16 16 14 Si 0.98 38.54 29.58 68.60 2.03 40.57 16 15 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 16 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 17 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 18 C 0.22 11.09 2.25 38.22 0.09 11.18 16 19 C -0.14 -6.77 9.52 22.41 0.21 -6.56 16 20 C -0.12 -4.58 10.04 22.25 0.22 -4.36 16 21 C -0.14 -5.22 10.04 22.30 0.22 -4.99 16 22 C -0.12 -4.70 10.04 22.25 0.22 -4.47 16 23 C -0.11 -5.29 8.99 22.41 0.20 -5.09 16 24 C 0.07 2.65 5.95 72.49 0.43 3.08 16 25 O -0.38 -13.06 11.35 -148.98 -1.69 -14.75 16 26 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.08 2.98 6.50 -2.39 -0.02 2.96 16 30 H 0.09 2.66 7.87 -2.39 -0.02 2.64 16 31 H 0.27 13.27 8.32 -92.71 -0.77 12.50 16 32 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 33 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 34 H 0.15 4.07 8.06 -2.91 -0.02 4.04 16 35 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 36 H 0.08 4.20 8.06 -2.91 -0.02 4.18 16 37 H 0.11 3.80 6.40 -2.39 -0.02 3.78 16 38 H 0.05 1.82 7.86 -2.39 -0.02 1.80 16 Total: -1.00 -61.90 312.67 4.72 -57.19 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 1.05 Total: 31.28 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 4.37 Total: -14.47 kcal Atomic # 7 Polarization: -65.49 SS G_CDS: -1.00 Total: -66.49 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -1.74 Total: -48.08 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Total: -61.90 4.72 -57.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335884529.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.206 kcal (2) G-P(sol) polarization free energy of solvation -61.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds