Wall clock time and date at job start Mon Mar 30 2020 02:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 107.97784 * 2 1 4 4 C 1.45390 * 108.24820 * 116.98447 * 2 1 3 5 5 C 1.55292 * 109.84714 * 185.17722 * 4 2 1 6 6 S 1.79394 * 109.72383 * 288.75873 * 5 4 2 7 7 O 1.42099 * 109.47067 * 205.32264 * 6 5 4 8 8 C 1.82418 * 106.80930 * 86.89467 * 6 5 4 9 9 C 1.54638 * 110.54356 * 319.26020 * 8 6 5 10 10 N 1.45585 * 108.46968 * 321.26836 * 9 8 6 11 11 C 1.46899 * 110.99885 * 227.97450 * 10 9 8 12 12 C 1.52999 * 109.47474 * 59.54987 * 11 10 9 13 13 O 1.42903 * 109.47100 * 63.01951 * 12 11 10 14 14 C 1.42903 * 114.00234 * 180.02562 * 13 12 11 15 15 C 1.50695 * 109.47306 * 180.02562 * 14 13 12 16 16 H 1.08008 * 119.99912 * 359.72320 * 15 14 13 17 17 C 1.37877 * 120.00121 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00008 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99982 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47513 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46856 * 119.99923 * 19 17 15 22 22 H 1.48498 * 109.47359 * 240.00085 * 19 17 15 23 23 H 1.09003 * 109.47177 * 176.97157 * 1 2 3 24 24 H 1.09001 * 109.46533 * 296.96770 * 1 2 3 25 25 H 1.08998 * 109.47244 * 56.96875 * 1 2 3 26 26 H 1.09000 * 109.40343 * 305.29177 * 4 2 1 27 27 H 1.09000 * 109.40858 * 65.06129 * 4 2 1 28 28 H 1.09002 * 109.43398 * 48.84065 * 5 4 2 29 29 H 1.09005 * 109.42553 * 168.68394 * 5 4 2 30 30 H 1.09003 * 109.26211 * 79.53454 * 8 6 5 31 31 H 1.09006 * 109.26101 * 199.02097 * 8 6 5 32 32 H 1.09004 * 109.64190 * 201.57021 * 9 8 6 33 33 H 1.09001 * 109.64074 * 80.95703 * 9 8 6 34 34 H 1.08997 * 109.47181 * 299.55304 * 11 10 9 35 35 H 1.09000 * 109.47275 * 179.54979 * 11 10 9 36 36 H 1.09003 * 109.46991 * 303.02395 * 12 11 10 37 37 H 1.08999 * 109.47448 * 183.01870 * 12 11 10 38 38 H 1.09005 * 109.46421 * 60.00285 * 14 13 12 39 39 H 1.09000 * 109.47322 * 300.00427 * 14 13 12 40 40 H 0.96999 * 120.00027 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8664 1.0367 0.0000 4 6 1.9853 -0.6265 1.2305 5 6 3.5320 -0.5296 1.3305 6 16 4.2864 -1.6293 0.1307 7 8 5.5857 -1.9952 0.5749 8 6 4.4183 -0.6957 -1.4309 9 6 3.1435 0.1466 -1.6688 10 7 1.9897 -0.6325 -1.2428 11 6 0.9348 -0.6129 -2.2649 12 6 1.4783 -1.1977 -3.5701 13 8 1.8367 -2.5660 -3.3662 14 6 2.3591 -3.2097 -4.5301 15 6 2.7010 -4.6403 -4.2022 16 1 2.5400 -5.0187 -3.2035 17 6 3.2251 -5.4644 -5.1755 18 7 3.4271 -5.0018 -6.3898 19 14 3.6495 -7.2375 -4.7688 20 1 3.3305 -7.5086 -3.3441 21 1 2.8570 -8.1472 -5.6348 22 1 5.0976 -7.4664 -5.0046 23 1 -0.3634 -1.0263 -0.0543 24 1 -0.3632 0.4661 0.9160 25 1 -0.3633 0.5602 -0.8615 26 1 1.5346 -0.1192 2.0834 27 1 1.6870 -1.6749 1.2350 28 1 3.8448 0.4952 1.1301 29 1 3.8489 -0.8150 2.3337 30 1 5.2828 -0.0336 -1.3821 31 1 4.5467 -1.3943 -2.2577 32 1 3.0539 0.3842 -2.7289 33 1 3.1987 1.0670 -1.0876 34 1 0.6117 0.4142 -2.4339 35 1 0.0881 -1.2089 -1.9246 36 1 2.3578 -0.6345 -3.8822 37 1 0.7128 -1.1341 -4.3434 38 1 3.2570 -2.6880 -4.8616 39 1 1.6122 -3.1877 -5.3237 40 1 3.7962 -5.5814 -7.0745 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339127849.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:14 Heat of formation + Delta-G solvation = -61.741205 kcal Electronic energy + Delta-G solvation = -20518.677137 eV Core-core repulsion = 17461.136926 eV Total energy + Delta-G solvation = -3057.540211 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.67632 -36.54847 -35.32473 -33.95666 -32.64115 -31.68932 -29.50426 -27.83355 -26.65584 -24.36446 -22.96204 -22.26886 -21.33457 -19.85326 -16.99339 -16.67964 -16.38079 -16.07723 -15.63430 -15.19101 -14.69998 -14.50210 -14.25229 -14.10284 -13.44300 -13.39740 -13.12308 -12.89378 -12.53661 -12.27901 -11.97863 -11.84272 -11.67895 -11.50370 -11.30374 -10.90452 -10.85999 -10.73521 -10.72854 -10.52803 -10.27737 -9.91864 -9.77963 -9.03291 -8.75852 -8.44252 -8.10543 -7.60004 -6.06361 -4.07125 1.71714 3.04297 3.34253 3.41319 3.47751 3.82453 4.09856 4.39810 4.49364 4.80871 4.88014 4.93241 5.13525 5.15891 5.22348 5.29964 5.31006 5.45439 5.50167 5.57120 5.62753 5.68701 5.76926 5.80259 5.90020 5.94597 6.07802 6.10678 6.18094 6.24700 6.34468 7.03904 7.09925 7.16421 7.46931 7.86386 8.21117 8.64274 9.08110 9.58196 11.05310 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.018482 B = 0.005643 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.619706 B = 4960.775478 C = 5776.810179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.058 3.942 3 H 0.047 0.953 4 C -0.073 4.073 5 C -0.464 4.464 6 S 1.280 4.720 7 O -0.874 6.874 8 C -0.425 4.425 9 C 0.059 3.941 10 N -0.496 5.496 11 C 0.055 3.945 12 C 0.058 3.942 13 O -0.376 6.376 14 C 0.193 3.807 15 C -0.509 4.509 16 H 0.070 0.930 17 C 0.055 3.945 18 N -0.901 5.901 19 Si 0.904 3.096 20 H -0.268 1.268 21 H -0.284 1.284 22 H -0.283 1.283 23 H 0.073 0.927 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.128 0.872 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.043 0.957 35 H 0.094 0.906 36 H 0.037 0.963 37 H 0.041 0.959 38 H 0.002 0.998 39 H 0.002 0.998 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.949 12.749 11.992 18.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.050 4.050 3 H 0.065 0.935 4 C -0.112 4.112 5 C -0.600 4.600 6 S 1.478 4.522 7 O -0.869 6.869 8 C -0.563 4.563 9 C -0.070 4.070 10 N -0.221 5.221 11 C -0.072 4.072 12 C -0.020 4.020 13 O -0.295 6.295 14 C 0.119 3.881 15 C -0.548 4.548 16 H 0.089 0.911 17 C -0.146 4.146 18 N -0.540 5.540 19 Si 0.731 3.269 20 H -0.192 1.192 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.092 0.908 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.146 0.854 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.112 0.888 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.471 11.172 12.251 17.798 hybrid contribution 1.504 2.051 -0.263 2.557 sum -4.967 13.223 11.988 18.527 Atomic orbital electron populations 1.22375 0.94944 1.03343 1.01911 1.20722 0.95790 0.96615 0.91911 0.93499 1.20116 0.91122 1.03369 0.96566 1.27967 1.05235 1.12817 1.14028 1.71826 0.98646 0.96356 0.85402 1.92946 1.43620 1.70887 1.79486 1.27989 1.00718 1.09556 1.18081 1.22324 0.89681 0.93266 1.01772 1.63143 1.06321 1.49421 1.03214 1.22440 0.94809 0.98515 0.91400 1.22424 0.97754 0.86985 0.94807 1.87950 1.83663 1.20268 1.37614 1.20188 0.92391 0.92528 0.83027 1.21118 1.41450 0.94546 0.97646 0.91133 1.24942 0.95644 0.99214 0.94778 1.69969 1.45231 1.36379 1.02467 0.86341 0.77973 0.83815 0.78774 1.19228 1.20985 1.20960 0.90778 0.92525 0.92097 0.90742 0.89376 0.90210 0.88122 0.90717 0.85365 0.90482 0.93038 0.93851 0.88787 0.94528 0.94120 0.98046 0.98042 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 7.76 37.16 0.29 -1.03 16 2 C 0.06 0.54 2.10 -71.33 -0.15 0.39 16 3 H 0.05 0.41 6.47 -51.93 -0.34 0.08 16 4 C -0.07 -0.65 4.92 -29.10 -0.14 -0.79 16 5 C -0.46 -5.09 5.95 38.37 0.23 -4.86 16 6 S 1.28 18.65 12.54 -107.50 -1.35 17.30 16 7 O -0.87 -17.94 18.13 -35.23 -0.64 -18.58 16 8 C -0.43 -6.06 6.83 38.02 0.26 -5.80 16 9 C 0.06 0.71 5.06 -3.67 -0.02 0.69 16 10 N -0.50 -5.92 3.89 -231.08 -0.90 -6.82 16 11 C 0.06 0.67 3.96 -3.82 -0.02 0.66 16 12 C 0.06 0.95 5.88 37.16 0.22 1.16 16 13 O -0.38 -8.17 10.24 -35.23 -0.36 -8.53 16 14 C 0.19 5.03 5.69 36.00 0.20 5.24 16 15 C -0.51 -14.47 9.43 -34.44 -0.32 -14.79 16 16 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 17 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -26.67 13.29 55.43 0.74 -25.94 16 19 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H 0.07 0.62 7.34 -51.93 -0.38 0.24 16 24 H 0.06 0.37 8.01 -51.93 -0.42 -0.05 16 25 H 0.06 0.46 6.23 -51.93 -0.32 0.14 16 26 H 0.07 0.54 7.99 -51.93 -0.41 0.12 16 27 H 0.09 0.76 8.12 -51.93 -0.42 0.34 16 28 H 0.08 0.84 7.97 -51.78 -0.41 0.43 16 29 H 0.10 1.10 8.14 -51.78 -0.42 0.67 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.13 2.11 8.14 -51.93 -0.42 1.69 16 32 H 0.08 0.94 5.59 -51.93 -0.29 0.65 16 33 H 0.05 0.52 6.41 -51.93 -0.33 0.19 16 34 H 0.04 0.42 7.13 -51.93 -0.37 0.05 16 35 H 0.09 1.11 6.47 -51.93 -0.34 0.77 16 36 H 0.04 0.59 6.05 -51.93 -0.31 0.27 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 39 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 40 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 320.73 15.07 4.83 4.83 Total: -1.00 -34.41 320.73 -8.68 -43.09 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -6.43 Total: -4.34 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 0.45 Total: -17.68 kcal Atomic # 7 Polarization: -32.60 SS G_CDS: -0.16 Total: -32.76 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -1.00 Total: -27.11 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 18.65 SS G_CDS: -1.35 Total: 17.30 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.41 -8.68 -43.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339127849.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.651 kcal (2) G-P(sol) polarization free energy of solvation -34.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds