Wall clock time and date at job start Mon Mar 30 2020 02:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 107.97784 * 2 1 4 4 C 1.45390 * 108.24820 * 116.98447 * 2 1 3 5 5 C 1.55292 * 109.84714 * 185.17722 * 4 2 1 6 6 S 1.79394 * 109.72383 * 288.75873 * 5 4 2 7 7 O 1.42099 * 109.47067 * 205.32264 * 6 5 4 8 8 C 1.82418 * 106.80930 * 86.89467 * 6 5 4 9 9 C 1.54638 * 110.54356 * 319.26020 * 8 6 5 10 10 N 1.45585 * 108.46968 * 321.26836 * 9 8 6 11 11 C 1.46899 * 110.99885 * 227.97450 * 10 9 8 12 12 C 1.52999 * 109.47474 * 59.54987 * 11 10 9 13 13 O 1.42903 * 109.47100 * 63.01951 * 12 11 10 14 14 C 1.42903 * 114.00234 * 180.02562 * 13 12 11 15 15 C 1.50695 * 109.47306 * 180.02562 * 14 13 12 16 16 H 1.08008 * 119.99912 * 359.72320 * 15 14 13 17 17 C 1.37877 * 120.00121 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00008 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99982 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47513 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46856 * 119.99923 * 19 17 15 22 22 H 1.48498 * 109.47359 * 240.00085 * 19 17 15 23 23 H 1.09003 * 109.47177 * 176.97157 * 1 2 3 24 24 H 1.09001 * 109.46533 * 296.96770 * 1 2 3 25 25 H 1.08998 * 109.47244 * 56.96875 * 1 2 3 26 26 H 1.09000 * 109.40343 * 305.29177 * 4 2 1 27 27 H 1.09000 * 109.40858 * 65.06129 * 4 2 1 28 28 H 1.09002 * 109.43398 * 48.84065 * 5 4 2 29 29 H 1.09005 * 109.42553 * 168.68394 * 5 4 2 30 30 H 1.09003 * 109.26211 * 79.53454 * 8 6 5 31 31 H 1.09006 * 109.26101 * 199.02097 * 8 6 5 32 32 H 1.09004 * 109.64190 * 201.57021 * 9 8 6 33 33 H 1.09001 * 109.64074 * 80.95703 * 9 8 6 34 34 H 1.08997 * 109.47181 * 299.55304 * 11 10 9 35 35 H 1.09000 * 109.47275 * 179.54979 * 11 10 9 36 36 H 1.09003 * 109.46991 * 303.02395 * 12 11 10 37 37 H 1.08999 * 109.47448 * 183.01870 * 12 11 10 38 38 H 1.09005 * 109.46421 * 60.00285 * 14 13 12 39 39 H 1.09000 * 109.47322 * 300.00427 * 14 13 12 40 40 H 0.96999 * 120.00027 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8664 1.0367 0.0000 4 6 1.9853 -0.6265 1.2305 5 6 3.5320 -0.5296 1.3305 6 16 4.2864 -1.6293 0.1307 7 8 5.5857 -1.9952 0.5749 8 6 4.4183 -0.6957 -1.4309 9 6 3.1435 0.1466 -1.6688 10 7 1.9897 -0.6325 -1.2428 11 6 0.9348 -0.6129 -2.2649 12 6 1.4783 -1.1977 -3.5701 13 8 1.8367 -2.5660 -3.3662 14 6 2.3591 -3.2097 -4.5301 15 6 2.7010 -4.6403 -4.2022 16 1 2.5400 -5.0187 -3.2035 17 6 3.2251 -5.4644 -5.1755 18 7 3.4271 -5.0018 -6.3898 19 14 3.6495 -7.2375 -4.7688 20 1 3.3305 -7.5086 -3.3441 21 1 2.8570 -8.1472 -5.6348 22 1 5.0976 -7.4664 -5.0046 23 1 -0.3634 -1.0263 -0.0543 24 1 -0.3632 0.4661 0.9160 25 1 -0.3633 0.5602 -0.8615 26 1 1.5346 -0.1192 2.0834 27 1 1.6870 -1.6749 1.2350 28 1 3.8448 0.4952 1.1301 29 1 3.8489 -0.8150 2.3337 30 1 5.2828 -0.0336 -1.3821 31 1 4.5467 -1.3943 -2.2577 32 1 3.0539 0.3842 -2.7289 33 1 3.1987 1.0670 -1.0876 34 1 0.6117 0.4142 -2.4339 35 1 0.0881 -1.2089 -1.9246 36 1 2.3578 -0.6345 -3.8822 37 1 0.7128 -1.1341 -4.3434 38 1 3.2570 -2.6880 -4.8616 39 1 1.6122 -3.1877 -5.3237 40 1 3.7962 -5.5814 -7.0745 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339127849.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:14 Heat of formation + Delta-G solvation = -87.994766 kcal Electronic energy + Delta-G solvation = -20519.815577 eV Core-core repulsion = 17461.136926 eV Total energy + Delta-G solvation = -3058.678651 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.57529 -38.16850 -36.69838 -35.10118 -34.56395 -32.72159 -30.65758 -29.20640 -28.25252 -25.29654 -24.34337 -23.98102 -22.33024 -20.72904 -18.52408 -18.18815 -17.63970 -17.27485 -17.10625 -16.32569 -16.24839 -15.87526 -15.70210 -15.12824 -14.89235 -14.56037 -14.34989 -13.98999 -13.81789 -13.44209 -13.21856 -13.03481 -12.88209 -12.72842 -12.64860 -12.49018 -12.35208 -12.10668 -11.91264 -11.62296 -11.47907 -11.25683 -11.10028 -10.95671 -10.74000 -10.01442 -9.34202 -8.74966 -8.24433 -6.33885 0.57052 1.44638 1.45960 1.60570 1.95029 2.41103 2.87232 3.01224 3.10615 3.39290 3.73347 3.94515 4.04672 4.13156 4.18554 4.37175 4.39609 4.51272 4.55871 4.62533 4.72561 4.80776 4.87573 4.93580 4.95558 5.00170 5.04493 5.09808 5.17020 5.29086 5.35068 5.48851 5.52279 5.67020 6.08431 6.16561 6.25239 6.69297 6.99650 7.38581 8.88014 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.018482 B = 0.005643 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.619706 B = 4960.775478 C = 5776.810179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.054 3.946 3 H 0.062 0.938 4 C -0.072 4.072 5 C -0.442 4.442 6 S 1.267 4.733 7 O -0.945 6.945 8 C -0.419 4.419 9 C 0.063 3.937 10 N -0.518 5.518 11 C 0.066 3.934 12 C 0.046 3.954 13 O -0.383 6.383 14 C 0.209 3.791 15 C -0.535 4.535 16 H 0.069 0.931 17 C 0.004 3.996 18 N -0.935 5.935 19 Si 0.972 3.028 20 H -0.259 1.259 21 H -0.273 1.273 22 H -0.280 1.280 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.106 0.894 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.036 0.964 37 H 0.046 0.954 38 H -0.022 1.022 39 H -0.018 1.018 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.758 13.833 13.665 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.053 4.053 3 H 0.080 0.920 4 C -0.111 4.111 5 C -0.582 4.582 6 S 1.469 4.531 7 O -0.940 6.940 8 C -0.558 4.558 9 C -0.067 4.067 10 N -0.243 5.243 11 C -0.061 4.061 12 C -0.032 4.032 13 O -0.302 6.302 14 C 0.134 3.866 15 C -0.573 4.573 16 H 0.087 0.913 17 C -0.194 4.194 18 N -0.575 5.575 19 Si 0.796 3.204 20 H -0.182 1.182 21 H -0.198 1.198 22 H -0.205 1.205 23 H 0.085 0.915 24 H 0.094 0.906 25 H 0.085 0.915 26 H 0.125 0.875 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.124 0.876 30 H 0.093 0.907 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.119 0.881 36 H 0.054 0.946 37 H 0.064 0.936 38 H -0.004 1.004 39 H 0.000 1.000 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.281 12.252 13.923 20.311 hybrid contribution 1.974 1.883 -0.758 2.832 sum -6.307 14.135 13.164 20.319 Atomic orbital electron populations 1.22340 0.93396 1.03291 1.03249 1.20805 0.97076 0.97046 0.90405 0.91974 1.20267 0.88946 1.04181 0.97695 1.27730 1.06445 1.11933 1.12120 1.70909 0.97077 0.98663 0.86445 1.92862 1.45852 1.74265 1.81049 1.27876 1.02548 1.09099 1.16283 1.22342 0.88518 0.93649 1.02162 1.63027 1.06401 1.50531 1.04354 1.22387 0.94513 1.00041 0.89118 1.22830 0.98088 0.84194 0.98048 1.87907 1.83429 1.23315 1.35584 1.19741 0.90909 0.92111 0.83861 1.21491 1.42028 0.95966 0.97784 0.91301 1.25884 0.95148 1.03841 0.94501 1.70076 1.45767 1.38182 1.03482 0.85283 0.77802 0.78204 0.79109 1.18240 1.19796 1.20536 0.91459 0.90582 0.91537 0.87537 0.89159 0.89068 0.87614 0.90728 0.88441 0.90868 0.90216 0.90361 0.88116 0.94568 0.93616 1.00406 0.99991 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 7.76 71.98 0.56 -1.29 16 2 C 0.05 0.79 2.10 42.61 0.09 0.88 16 3 H 0.06 0.77 6.47 -2.39 -0.02 0.75 16 4 C -0.07 -1.00 4.92 29.06 0.14 -0.86 16 5 C -0.44 -8.63 5.95 72.77 0.43 -8.20 16 6 S 1.27 37.45 12.54 -56.49 -0.71 36.74 16 7 O -0.94 -40.57 18.13 -148.98 -2.70 -43.28 16 8 C -0.42 -12.18 6.83 72.54 0.50 -11.69 16 9 C 0.06 1.40 5.06 87.11 0.44 1.84 16 10 N -0.52 -11.17 3.89 -884.99 -3.44 -14.61 16 11 C 0.07 1.44 3.96 86.30 0.34 1.78 16 12 C 0.05 1.46 5.88 71.98 0.42 1.88 16 13 O -0.38 -16.96 10.24 -148.98 -1.53 -18.48 16 14 C 0.21 11.31 5.69 71.23 0.41 11.72 16 15 C -0.53 -31.10 9.43 25.60 0.24 -30.86 16 16 H 0.07 3.93 7.81 -2.91 -0.02 3.90 16 17 C 0.00 0.23 5.46 84.66 0.46 0.69 16 18 N -0.93 -56.40 13.29 21.45 0.28 -56.11 16 19 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 20 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H 0.07 0.87 7.34 -2.39 -0.02 0.86 16 24 H 0.08 0.59 8.01 -2.39 -0.02 0.57 16 25 H 0.07 0.69 6.23 -2.39 -0.01 0.67 16 26 H 0.11 0.95 7.99 -2.39 -0.02 0.93 16 27 H 0.09 1.28 8.12 -2.39 -0.02 1.26 16 28 H 0.09 1.62 7.97 -2.48 -0.02 1.60 16 29 H 0.11 2.06 8.14 -2.48 -0.02 2.04 16 30 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.10 3.45 8.14 -2.38 -0.02 3.43 16 32 H 0.07 1.70 5.59 -2.38 -0.01 1.68 16 33 H 0.08 1.33 6.41 -2.39 -0.02 1.32 16 34 H 0.08 1.21 7.13 -2.39 -0.02 1.19 16 35 H 0.10 2.09 6.47 -2.39 -0.02 2.08 16 36 H 0.04 1.16 6.05 -2.39 -0.01 1.15 16 37 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 38 H -0.02 -1.25 8.14 -2.38 -0.02 -1.27 16 39 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 40 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -77.14 320.73 -1.02 -78.16 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 1.01 Total: 4.99 kcal Atomic # 6 Polarization: -38.15 SS G_CDS: 4.03 Total: -34.12 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: -3.15 Total: -70.72 kcal Atomic # 8 Polarization: -57.53 SS G_CDS: -4.23 Total: -61.76 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: 37.45 SS G_CDS: -0.71 Total: 36.74 kcal Total: -77.14 -1.02 -78.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339127849.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.836 kcal (2) G-P(sol) polarization free energy of solvation -77.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds