Wall clock time and date at job start Mon Mar 30 2020 02:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.63907 * 2 1 4 4 C 1.54342 * 110.84904 * 236.84255 * 2 1 3 5 5 N 1.47020 * 107.26552 * 219.67082 * 4 2 1 6 6 C 1.34769 * 125.64882 * 178.85216 * 5 4 2 7 7 O 1.21592 * 120.00154 * 353.91754 * 6 5 4 8 8 C 1.47643 * 120.00264 * 173.92372 * 6 5 4 9 9 C 1.40017 * 119.89138 * 339.40159 * 8 6 5 10 10 C 1.36321 * 120.10635 * 179.97438 * 9 8 6 11 11 C 1.40888 * 119.88865 * 359.97438 * 10 9 8 12 12 C 1.41109 * 120.10015 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00310 * 333.14683 * 12 11 10 14 14 C 1.40231 * 119.99805 * 152.87007 * 12 11 10 15 15 N 1.30648 * 120.00123 * 347.96223 * 14 12 11 16 16 Si 1.86796 * 119.99936 * 167.96399 * 14 12 11 17 17 H 1.48498 * 109.47203 * 89.99843 * 16 14 12 18 18 H 1.48503 * 109.47176 * 210.00043 * 16 14 12 19 19 H 1.48507 * 109.46991 * 329.99738 * 16 14 12 20 20 C 1.40885 * 119.79519 * 0.26352 * 11 10 9 21 21 C 1.36317 * 119.89367 * 359.47857 * 20 11 10 22 22 C 1.47430 * 108.70251 * 358.58350 * 5 4 2 23 23 C 1.54911 * 104.83000 * 24.35819 * 22 5 4 24 24 H 1.08997 * 111.00343 * 204.87674 * 23 22 5 25 25 O 1.42898 * 111.00659 * 81.06446 * 23 22 5 26 26 H 1.08999 * 109.47097 * 296.85083 * 1 2 3 27 27 H 1.08998 * 109.47414 * 56.85555 * 1 2 3 28 28 H 1.09008 * 109.47049 * 176.85154 * 1 2 3 29 29 H 1.09000 * 109.98709 * 100.19406 * 4 2 1 30 30 H 1.08999 * 109.77742 * 339.02882 * 4 2 1 31 31 H 1.07994 * 119.94954 * 359.94891 * 9 8 6 32 32 H 1.08000 * 120.05596 * 179.97438 * 10 9 8 33 33 H 0.96997 * 119.99768 * 180.02562 * 15 14 12 34 34 H 1.08010 * 120.05578 * 179.72234 * 20 11 10 35 35 H 1.07999 * 119.94933 * 180.25587 * 21 20 11 36 36 H 1.08999 * 110.36699 * 143.19060 * 22 5 4 37 37 H 1.09001 * 110.36752 * 265.52412 * 22 5 4 38 38 H 0.96702 * 114.00189 * 61.45324 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0793 -0.7889 -1.2075 5 7 3.2445 -1.5519 -0.7367 6 6 3.9923 -2.3858 -1.4861 7 8 3.6583 -2.6429 -2.6267 8 6 5.2171 -2.9874 -0.9223 9 6 5.8404 -2.3951 0.1828 10 6 6.9711 -2.9471 0.7072 11 6 7.5120 -4.1158 0.1358 12 6 8.6826 -4.6907 0.6748 13 1 9.3970 -4.0718 1.1973 14 6 8.9155 -6.0666 0.5369 15 7 7.9572 -6.8534 0.1252 16 14 10.5960 -6.7746 0.9419 17 1 10.6371 -7.1634 2.3745 18 1 10.8462 -7.9700 0.0972 19 1 11.6407 -5.7531 0.6760 20 6 6.8841 -4.7052 -0.9791 21 6 5.7508 -4.1490 -1.4934 22 6 3.4634 -1.2486 0.6894 23 6 2.0790 -0.7935 1.2149 24 1 2.1850 -0.1491 2.0876 25 8 1.2481 -1.9181 1.5100 26 1 -0.3633 0.4642 0.9169 27 1 -0.3634 0.5619 -0.8604 28 1 -0.3633 -1.0262 -0.0564 29 1 2.3813 -0.1000 -1.9964 30 1 1.3155 -1.4712 -1.5806 31 1 5.4250 -1.4993 0.6201 32 1 7.4515 -2.4894 1.5594 33 1 8.1183 -7.8051 0.0302 34 1 7.2977 -5.5987 -1.4233 35 1 5.2663 -4.6024 -2.3455 36 1 3.7961 -2.1406 1.2202 37 1 4.1931 -0.4464 0.7990 38 1 1.6017 -2.4986 2.1979 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351853054.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:07 Heat of formation + Delta-G solvation = -60.744398 kcal Electronic energy + Delta-G solvation = -21043.397613 eV Core-core repulsion = 17850.456675 eV Total energy + Delta-G solvation = -3192.940938 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.98041 -38.03371 -36.92220 -35.03463 -33.91382 -32.63111 -30.10042 -29.60778 -28.72098 -26.81232 -25.28534 -23.29039 -21.33040 -21.03171 -20.08241 -19.11750 -17.60645 -17.51259 -16.30273 -15.67584 -15.41427 -15.21199 -14.58605 -14.20210 -13.81328 -13.58200 -13.21909 -13.00488 -12.82503 -12.63166 -12.32759 -12.05511 -12.01691 -11.84868 -11.42834 -11.36228 -11.21894 -11.05768 -10.95585 -10.66795 -10.49352 -10.15718 -9.94924 -9.46777 -9.37761 -8.97920 -8.19586 -7.68629 -7.51267 -6.95779 -4.60630 2.25576 2.91806 2.96010 3.00794 3.02083 3.50266 3.75263 3.82792 4.05896 4.48376 4.51956 4.57969 4.83067 5.22042 5.32590 5.43235 5.54309 5.57685 5.63017 5.71794 5.83164 5.89423 6.00804 6.07865 6.10960 6.27382 6.32391 6.70566 6.82566 6.87197 7.06264 7.12836 7.45355 7.59912 7.60711 7.82761 7.87630 8.05264 8.18304 8.44750 8.64862 8.76282 9.01907 9.95119 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.035540 B = 0.004026 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.666197 B = 6953.471956 C = 7287.248570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 H 0.092 0.908 4 C 0.117 3.883 5 N -0.620 5.620 6 C 0.587 3.413 7 O -0.568 6.568 8 C -0.274 4.274 9 C -0.068 4.068 10 C -0.235 4.235 11 C 0.127 3.873 12 C -0.446 4.446 13 H 0.083 0.917 14 C 0.072 3.928 15 N -0.778 5.778 16 Si 0.915 3.085 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.259 1.259 20 C -0.176 4.176 21 C -0.040 4.040 22 C 0.073 3.927 23 C 0.089 3.911 24 H 0.076 0.924 25 O -0.553 6.553 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.286 0.714 34 H 0.124 0.876 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.408 8.945 5.012 12.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.116 4.116 3 H 0.110 0.890 4 C -0.006 4.006 5 N -0.355 5.355 6 C 0.384 3.616 7 O -0.449 6.449 8 C -0.278 4.278 9 C -0.087 4.087 10 C -0.254 4.254 11 C 0.124 3.876 12 C -0.474 4.474 13 H 0.101 0.899 14 C -0.148 4.148 15 N -0.402 5.402 16 Si 0.739 3.261 17 H -0.192 1.192 18 H -0.198 1.198 19 H -0.182 1.182 20 C -0.195 4.195 21 C -0.059 4.059 22 C -0.051 4.051 23 C 0.029 3.971 24 H 0.094 0.906 25 O -0.359 6.359 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.123 0.877 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.142 0.858 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -7.961 8.756 3.831 12.439 hybrid contribution 1.138 -0.627 0.715 1.483 sum -6.824 8.129 4.546 11.546 Atomic orbital electron populations 1.21549 0.93288 1.02882 1.01238 1.22319 0.97356 0.98432 0.93514 0.88995 1.21855 0.88638 0.94306 0.95810 1.48207 1.30500 1.46331 1.10489 1.18420 0.82641 0.76303 0.84285 1.90652 1.73084 1.62178 1.19015 1.18872 1.00265 1.03425 1.05250 1.20946 0.95715 0.97730 0.94267 1.20720 0.99401 1.02046 1.03256 1.17804 0.91010 0.89847 0.88918 1.19806 1.04558 0.92913 1.30132 0.89911 1.26082 0.98568 0.97403 0.92765 1.69723 1.32522 1.06149 1.31792 0.86192 0.81618 0.79043 0.79275 1.19234 1.19841 1.18240 1.21082 0.97655 1.02714 0.98047 1.20482 0.95146 0.93296 0.97021 1.23320 0.96716 1.01538 0.83540 1.23048 0.89392 0.88051 0.96631 0.90621 1.86476 1.48572 1.38868 1.61961 0.92493 0.92802 0.91417 0.92158 0.91588 0.87735 0.88551 0.90294 0.85837 0.88390 0.89144 0.90722 0.77166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 8.76 37.16 0.33 -1.00 16 2 C -0.10 -1.07 3.47 -88.78 -0.31 -1.38 16 3 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.12 1.75 6.48 -3.06 -0.02 1.73 16 5 N -0.62 -11.02 3.33 -171.69 -0.57 -11.59 16 6 C 0.59 13.19 7.67 -12.42 -0.10 13.10 16 7 O -0.57 -14.46 16.85 5.28 0.09 -14.37 16 8 C -0.27 -6.39 5.76 -104.73 -0.60 -7.00 16 9 C -0.07 -1.45 8.01 -39.61 -0.32 -1.77 16 10 C -0.23 -5.39 9.73 -39.27 -0.38 -5.77 16 11 C 0.13 3.25 5.56 -106.80 -0.59 2.65 16 12 C -0.45 -11.11 9.06 -37.75 -0.34 -11.45 16 13 H 0.08 1.95 7.88 -52.49 -0.41 1.53 16 14 C 0.07 1.70 5.24 -17.31 -0.09 1.61 16 15 N -0.78 -19.12 10.80 55.56 0.60 -18.52 16 16 Si 0.92 17.50 29.58 -169.99 -5.03 12.47 16 17 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 18 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 19 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 20 C -0.18 -4.53 8.61 -39.27 -0.34 -4.87 16 21 C -0.04 -1.00 9.52 -39.61 -0.38 -1.38 16 22 C 0.07 1.00 4.67 -2.53 -0.01 0.99 16 23 C 0.09 0.98 4.17 -24.58 -0.10 0.87 16 24 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 25 O -0.55 -6.60 12.22 -35.23 -0.43 -7.03 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.80 7.45 -51.92 -0.39 0.41 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.08 7.77 -51.93 -0.40 0.67 16 31 H 0.11 1.85 4.19 -52.49 -0.22 1.63 16 32 H 0.10 2.02 8.06 -52.49 -0.42 1.59 16 33 H 0.29 6.35 8.29 -40.82 -0.34 6.01 16 34 H 0.12 3.27 6.15 -52.48 -0.32 2.95 16 35 H 0.10 2.42 7.77 -52.49 -0.41 2.01 16 36 H 0.09 1.34 6.63 -51.93 -0.34 0.99 16 37 H 0.07 0.93 6.89 -51.93 -0.36 0.57 16 38 H 0.38 3.29 9.11 45.56 0.42 3.71 16 LS Contribution 311.68 15.07 4.70 4.70 Total: -1.00 -30.54 311.68 -8.01 -38.55 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -4.11 Total: 9.44 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -3.26 Total: -13.65 kcal Atomic # 7 Polarization: -30.14 SS G_CDS: 0.03 Total: -30.11 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.34 Total: -21.40 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.54 -8.01 -38.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351853054.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.195 kcal (2) G-P(sol) polarization free energy of solvation -30.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds