Wall clock time and date at job start Mon Mar 30 2020 02:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.63907 * 2 1 4 4 C 1.54342 * 110.84904 * 236.84255 * 2 1 3 5 5 N 1.47020 * 107.26552 * 219.67082 * 4 2 1 6 6 C 1.34769 * 125.64882 * 178.85216 * 5 4 2 7 7 O 1.21592 * 120.00154 * 353.91754 * 6 5 4 8 8 C 1.47643 * 120.00264 * 173.92372 * 6 5 4 9 9 C 1.40017 * 119.89138 * 339.40159 * 8 6 5 10 10 C 1.36321 * 120.10635 * 179.97438 * 9 8 6 11 11 C 1.40888 * 119.88865 * 359.97438 * 10 9 8 12 12 C 1.41109 * 120.10015 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00310 * 333.14683 * 12 11 10 14 14 C 1.40231 * 119.99805 * 152.87007 * 12 11 10 15 15 N 1.30648 * 120.00123 * 347.96223 * 14 12 11 16 16 Si 1.86796 * 119.99936 * 167.96399 * 14 12 11 17 17 H 1.48498 * 109.47203 * 89.99843 * 16 14 12 18 18 H 1.48503 * 109.47176 * 210.00043 * 16 14 12 19 19 H 1.48507 * 109.46991 * 329.99738 * 16 14 12 20 20 C 1.40885 * 119.79519 * 0.26352 * 11 10 9 21 21 C 1.36317 * 119.89367 * 359.47857 * 20 11 10 22 22 C 1.47430 * 108.70251 * 358.58350 * 5 4 2 23 23 C 1.54911 * 104.83000 * 24.35819 * 22 5 4 24 24 H 1.08997 * 111.00343 * 204.87674 * 23 22 5 25 25 O 1.42898 * 111.00659 * 81.06446 * 23 22 5 26 26 H 1.08999 * 109.47097 * 296.85083 * 1 2 3 27 27 H 1.08998 * 109.47414 * 56.85555 * 1 2 3 28 28 H 1.09008 * 109.47049 * 176.85154 * 1 2 3 29 29 H 1.09000 * 109.98709 * 100.19406 * 4 2 1 30 30 H 1.08999 * 109.77742 * 339.02882 * 4 2 1 31 31 H 1.07994 * 119.94954 * 359.94891 * 9 8 6 32 32 H 1.08000 * 120.05596 * 179.97438 * 10 9 8 33 33 H 0.96997 * 119.99768 * 180.02562 * 15 14 12 34 34 H 1.08010 * 120.05578 * 179.72234 * 20 11 10 35 35 H 1.07999 * 119.94933 * 180.25587 * 21 20 11 36 36 H 1.08999 * 110.36699 * 143.19060 * 22 5 4 37 37 H 1.09001 * 110.36752 * 265.52412 * 22 5 4 38 38 H 0.96702 * 114.00189 * 61.45324 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0793 -0.7889 -1.2075 5 7 3.2445 -1.5519 -0.7367 6 6 3.9923 -2.3858 -1.4861 7 8 3.6583 -2.6429 -2.6267 8 6 5.2171 -2.9874 -0.9223 9 6 5.8404 -2.3951 0.1828 10 6 6.9711 -2.9471 0.7072 11 6 7.5120 -4.1158 0.1358 12 6 8.6826 -4.6907 0.6748 13 1 9.3970 -4.0718 1.1973 14 6 8.9155 -6.0666 0.5369 15 7 7.9572 -6.8534 0.1252 16 14 10.5960 -6.7746 0.9419 17 1 10.6371 -7.1634 2.3745 18 1 10.8462 -7.9700 0.0972 19 1 11.6407 -5.7531 0.6760 20 6 6.8841 -4.7052 -0.9791 21 6 5.7508 -4.1490 -1.4934 22 6 3.4634 -1.2486 0.6894 23 6 2.0790 -0.7935 1.2149 24 1 2.1850 -0.1491 2.0876 25 8 1.2481 -1.9181 1.5100 26 1 -0.3633 0.4642 0.9169 27 1 -0.3634 0.5619 -0.8604 28 1 -0.3633 -1.0262 -0.0564 29 1 2.3813 -0.1000 -1.9964 30 1 1.3155 -1.4712 -1.5806 31 1 5.4250 -1.4993 0.6201 32 1 7.4515 -2.4894 1.5594 33 1 8.1183 -7.8051 0.0302 34 1 7.2977 -5.5987 -1.4233 35 1 5.2663 -4.6024 -2.3455 36 1 3.7961 -2.1406 1.2202 37 1 4.1931 -0.4464 0.7990 38 1 1.6017 -2.4986 2.1979 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351853054.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:07 Heat of formation + Delta-G solvation = -81.426147 kcal Electronic energy + Delta-G solvation = -21044.294441 eV Core-core repulsion = 17850.456675 eV Total energy + Delta-G solvation = -3193.837766 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.36267 -39.51757 -38.64389 -36.16964 -35.69827 -33.81777 -31.92079 -31.37893 -29.85856 -28.31748 -26.74931 -24.58647 -22.92334 -22.81089 -21.10677 -20.65966 -19.37758 -18.65861 -17.80934 -17.16884 -16.90829 -16.76418 -15.87653 -15.52999 -15.29665 -14.87628 -14.82764 -14.44756 -14.27525 -13.94357 -13.72183 -13.58227 -13.41570 -13.16771 -13.06806 -12.81175 -12.65651 -12.36862 -12.30184 -11.93875 -11.78380 -11.51889 -11.27275 -11.15520 -11.04628 -10.66173 -9.70589 -9.53894 -9.34087 -8.74019 -6.49980 0.43490 1.13097 1.38477 1.42553 1.54456 2.03262 2.11939 2.17890 2.76030 3.21501 3.46945 3.60235 3.66627 3.93986 4.11628 4.23667 4.34125 4.37780 4.55194 4.58626 4.64000 4.69382 4.80498 4.87469 4.96067 5.01119 5.10502 5.16523 5.18505 5.25049 5.44089 5.50500 5.58753 5.76807 5.99280 6.00660 6.19109 6.54765 6.58658 6.77343 6.88368 6.88877 7.31637 8.19658 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.035540 B = 0.004026 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.666197 B = 6953.471956 C = 7287.248570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 H 0.124 0.876 4 C 0.108 3.892 5 N -0.616 5.616 6 C 0.579 3.421 7 O -0.613 6.613 8 C -0.285 4.285 9 C -0.052 4.052 10 C -0.242 4.242 11 C 0.100 3.900 12 C -0.473 4.473 13 H 0.093 0.907 14 C 0.031 3.969 15 N -0.812 5.812 16 Si 0.991 3.009 17 H -0.257 1.257 18 H -0.270 1.270 19 H -0.254 1.254 20 C -0.196 4.196 21 C -0.056 4.056 22 C 0.059 3.941 23 C 0.097 3.903 24 H 0.120 0.880 25 O -0.573 6.573 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.043 0.957 31 H 0.148 0.852 32 H 0.120 0.880 33 H 0.293 0.707 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.275 11.133 7.487 15.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.107 4.107 3 H 0.142 0.858 4 C -0.014 4.014 5 N -0.349 5.349 6 C 0.374 3.626 7 O -0.498 6.498 8 C -0.290 4.290 9 C -0.070 4.070 10 C -0.261 4.261 11 C 0.097 3.903 12 C -0.501 4.501 13 H 0.111 0.889 14 C -0.186 4.186 15 N -0.436 5.436 16 Si 0.811 3.189 17 H -0.182 1.182 18 H -0.194 1.194 19 H -0.178 1.178 20 C -0.215 4.215 21 C -0.076 4.076 22 C -0.063 4.063 23 C 0.038 3.962 24 H 0.137 0.863 25 O -0.381 6.381 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.165 0.835 32 H 0.138 0.862 33 H 0.104 0.896 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.118 0.882 38 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -7.861 10.977 6.355 14.922 hybrid contribution 0.983 -1.273 -0.060 1.609 sum -6.878 9.704 6.296 13.458 Atomic orbital electron populations 1.21515 0.92513 1.01764 1.02743 1.22412 0.97859 0.99201 0.91212 0.85823 1.22104 0.87165 0.93997 0.98142 1.48205 1.30012 1.44610 1.12027 1.18333 0.83000 0.77159 0.84087 1.90614 1.74132 1.64064 1.20961 1.19113 1.01038 1.02955 1.05869 1.21289 0.94544 0.98363 0.92818 1.21014 0.99846 1.01390 1.03863 1.18174 0.91796 0.91214 0.89102 1.20143 1.04936 0.93986 1.31000 0.88937 1.27018 1.02304 0.97303 0.92003 1.69793 1.34693 1.06834 1.32284 0.85061 0.76350 0.78169 0.79363 1.18165 1.19409 1.17755 1.20984 0.98520 1.02862 0.99146 1.20532 0.95371 0.94540 0.97151 1.23685 0.99737 1.02005 0.80863 1.23181 0.87003 0.88124 0.97890 0.86274 1.86461 1.49140 1.39710 1.62772 0.90543 0.91782 0.93815 0.92033 0.93803 0.83488 0.86197 0.89573 0.87633 0.89694 0.90127 0.88152 0.75662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.76 71.98 0.63 -1.55 16 2 C -0.09 -1.62 3.47 -9.60 -0.03 -1.66 16 3 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 4 C 0.11 3.12 6.48 86.74 0.56 3.68 16 5 N -0.62 -21.21 3.33 -815.37 -2.71 -23.92 16 6 C 0.58 26.43 7.67 86.73 0.67 27.10 16 7 O -0.61 -32.48 16.85 -4.01 -0.07 -32.54 16 8 C -0.29 -13.55 5.76 -19.93 -0.11 -13.66 16 9 C -0.05 -2.14 8.01 22.25 0.18 -1.97 16 10 C -0.24 -10.88 9.73 22.47 0.22 -10.66 16 11 C 0.10 5.20 5.56 -21.28 -0.12 5.09 16 12 C -0.47 -23.72 9.06 23.46 0.21 -23.51 16 13 H 0.09 4.31 7.88 -2.91 -0.02 4.28 16 14 C 0.03 1.47 5.24 85.35 0.45 1.92 16 15 N -0.81 -40.95 10.80 21.87 0.24 -40.71 16 16 Si 0.99 35.48 29.58 68.60 2.03 37.51 16 17 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 18 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 19 H -0.25 -8.83 7.11 99.48 0.71 -8.13 16 20 C -0.20 -10.60 8.61 22.47 0.19 -10.41 16 21 C -0.06 -2.97 9.52 22.25 0.21 -2.76 16 22 C 0.06 1.44 4.67 86.85 0.41 1.85 16 23 C 0.10 1.74 4.17 31.98 0.13 1.87 16 24 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 25 O -0.57 -12.16 12.22 -148.98 -1.82 -13.98 16 26 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.04 0.96 7.45 -2.38 -0.02 0.94 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.04 1.45 7.77 -2.39 -0.02 1.43 16 31 H 0.15 4.69 4.19 -2.91 -0.01 4.68 16 32 H 0.12 4.75 8.06 -2.91 -0.02 4.72 16 33 H 0.29 13.33 8.29 -92.71 -0.77 12.56 16 34 H 0.11 5.97 6.15 -2.91 -0.02 5.95 16 35 H 0.08 4.54 7.77 -2.91 -0.02 4.52 16 36 H 0.08 2.16 6.63 -2.39 -0.02 2.15 16 37 H 0.10 1.99 6.89 -2.39 -0.02 1.97 16 38 H 0.39 5.87 9.11 -74.06 -0.67 5.19 16 Total: -1.00 -69.97 311.68 1.67 -68.30 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 0.41 Total: 30.03 kcal Atomic # 6 Polarization: -28.26 SS G_CDS: 3.59 Total: -24.67 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: -2.47 Total: -64.64 kcal Atomic # 8 Polarization: -44.64 SS G_CDS: -1.89 Total: -46.53 kcal Atomic # 14 Polarization: 35.48 SS G_CDS: 2.03 Total: 37.51 kcal Total: -69.97 1.67 -68.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351853054.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.124 kcal (2) G-P(sol) polarization free energy of solvation -69.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds