Wall clock time and date at job start Mon Mar 30 2020 02:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.64358 * 2 1 4 4 C 1.54321 * 110.72178 * 236.85591 * 2 1 3 5 5 N 1.47023 * 107.27322 * 219.27416 * 4 2 1 6 6 C 1.34778 * 125.64906 * 178.90902 * 5 4 2 7 7 O 1.21588 * 119.99517 * 174.90369 * 6 5 4 8 8 C 1.47636 * 120.00108 * 354.90214 * 6 5 4 9 9 C 1.40012 * 119.89558 * 7.42061 * 8 6 5 10 10 C 1.36314 * 120.10907 * 179.71716 * 9 8 6 11 11 C 1.40894 * 119.89155 * 0.57328 * 10 9 8 12 12 C 1.41100 * 120.10728 * 179.67426 * 11 10 9 13 13 H 1.08001 * 120.00046 * 156.90436 * 12 11 10 14 14 C 1.40226 * 120.00024 * 336.90973 * 12 11 10 15 15 N 1.30638 * 120.00040 * 339.57342 * 14 12 11 16 16 Si 1.86806 * 119.99945 * 159.57179 * 14 12 11 17 17 H 1.48492 * 109.47240 * 94.72960 * 16 14 12 18 18 H 1.48506 * 109.46924 * 214.72650 * 16 14 12 19 19 H 1.48495 * 109.47056 * 334.72579 * 16 14 12 20 20 C 1.40892 * 119.78955 * 359.70152 * 11 10 9 21 21 C 1.36320 * 119.89244 * 359.97438 * 20 11 10 22 22 C 1.47423 * 108.70090 * 358.93667 * 5 4 2 23 23 C 1.54908 * 104.83204 * 24.13332 * 22 5 4 24 24 H 1.08999 * 111.00743 * 81.06669 * 23 22 5 25 25 O 1.42898 * 111.00451 * 204.91342 * 23 22 5 26 26 H 1.08999 * 109.47509 * 179.29886 * 1 2 3 27 27 H 1.09001 * 109.47313 * 299.30241 * 1 2 3 28 28 H 1.09005 * 109.46761 * 59.30425 * 1 2 3 29 29 H 1.09004 * 109.88478 * 338.68706 * 4 2 1 30 30 H 1.08992 * 109.88327 * 99.69733 * 4 2 1 31 31 H 1.08000 * 119.94526 * 359.97438 * 9 8 6 32 32 H 1.07998 * 120.06149 * 180.25355 * 10 9 8 33 33 H 0.96998 * 120.00406 * 180.02562 * 15 14 12 34 34 H 1.08001 * 120.05491 * 179.97438 * 20 11 10 35 35 H 1.07998 * 119.94536 * 180.02562 * 21 20 11 36 36 H 1.08997 * 110.36789 * 142.97258 * 22 5 4 37 37 H 1.09005 * 110.37080 * 265.18075 * 22 5 4 38 38 H 0.96701 * 114.00467 * 292.19953 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7892 -1.2085 5 7 3.2470 -1.5463 -0.7425 6 6 3.9948 -2.3779 -1.4946 7 8 4.9983 -2.8821 -1.0286 8 6 3.5955 -2.6767 -2.8842 9 6 2.5323 -1.9791 -3.4701 10 6 2.1637 -2.2474 -4.7547 11 6 2.8467 -3.2371 -5.4891 12 6 2.4645 -3.5233 -6.8168 13 1 3.1709 -3.9769 -7.4963 14 6 1.1674 -3.2188 -7.2542 15 7 0.2067 -3.0539 -6.3845 16 14 0.8134 -3.0487 -9.0805 17 1 0.3126 -4.3424 -9.6102 18 1 -0.2141 -1.9971 -9.2897 19 1 2.0602 -2.6712 -9.7933 20 6 3.9122 -3.9404 -4.8932 21 6 4.2779 -3.6604 -3.6102 22 6 3.4673 -1.2456 0.6838 23 6 2.0827 -0.7949 1.2125 24 1 1.4513 -1.6546 1.4367 25 8 2.2214 0.0485 2.3576 26 1 -0.3634 -1.0275 -0.0126 27 1 -0.3634 0.5030 0.8962 28 1 -0.3633 0.5246 -0.8837 29 1 1.3141 -1.4754 -1.5781 30 1 2.3687 -0.0994 -2.0001 31 1 2.0061 -1.2243 -2.9047 32 1 1.3462 -1.7060 -5.2073 33 1 -0.6906 -2.8436 -6.6870 34 1 4.4384 -4.7002 -5.4520 35 1 5.0948 -4.1988 -3.1527 36 1 3.8029 -2.1379 1.2122 37 1 4.1969 -0.4433 0.7942 38 1 2.5638 -0.4042 3.1405 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351853057.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:10 Heat of formation + Delta-G solvation = -50.043210 kcal Electronic energy + Delta-G solvation = -21037.910927 eV Core-core repulsion = 17845.434027 eV Total energy + Delta-G solvation = -3192.476900 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.01566 -38.02447 -36.92909 -35.58057 -33.90691 -32.41041 -30.71288 -29.52708 -28.40601 -26.48040 -25.71485 -23.17276 -21.41073 -21.14930 -20.13925 -19.14412 -17.74538 -17.45450 -16.46809 -15.71023 -15.45683 -14.96841 -14.47961 -14.30917 -14.05654 -13.57344 -13.30418 -12.99162 -12.83030 -12.65556 -12.50972 -12.20427 -11.99531 -11.82133 -11.51137 -11.32337 -11.26359 -11.01983 -10.82512 -10.65533 -10.47402 -10.21057 -10.02014 -9.46811 -9.21429 -8.95742 -8.27275 -7.71138 -7.55321 -7.07246 -4.60376 2.23056 2.88405 2.93268 3.00016 3.04425 3.35625 3.71998 3.80910 4.09483 4.42427 4.48966 4.61047 4.88686 5.18668 5.29960 5.42396 5.55665 5.59260 5.63445 5.77882 5.90143 5.92268 5.95000 6.05170 6.16522 6.23992 6.31886 6.66093 6.78539 6.81519 7.05496 7.13772 7.43701 7.44787 7.64964 7.79888 7.87168 8.05213 8.14382 8.39396 8.62429 8.76196 8.99693 9.84842 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.024586 B = 0.004590 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.583979 B = 6099.162570 C = 7112.707744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 H 0.091 0.909 4 C 0.105 3.895 5 N -0.623 5.623 6 C 0.587 3.413 7 O -0.573 6.573 8 C -0.283 4.283 9 C -0.099 4.099 10 C -0.182 4.182 11 C 0.128 3.872 12 C -0.442 4.442 13 H 0.085 0.915 14 C 0.077 3.923 15 N -0.768 5.768 16 Si 0.911 3.089 17 H -0.267 1.267 18 H -0.272 1.272 19 H -0.257 1.257 20 C -0.240 4.240 21 C -0.021 4.021 22 C 0.080 3.920 23 C 0.092 3.908 24 H 0.074 0.926 25 O -0.557 6.557 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.287 0.713 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.333 5.622 8.579 10.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.110 0.890 4 C -0.018 4.018 5 N -0.359 5.359 6 C 0.385 3.615 7 O -0.455 6.455 8 C -0.287 4.287 9 C -0.117 4.117 10 C -0.202 4.202 11 C 0.124 3.876 12 C -0.470 4.470 13 H 0.103 0.897 14 C -0.145 4.145 15 N -0.391 5.391 16 Si 0.734 3.266 17 H -0.192 1.192 18 H -0.197 1.197 19 H -0.180 1.180 20 C -0.259 4.259 21 C -0.041 4.041 22 C -0.044 4.044 23 C 0.033 3.967 24 H 0.092 0.908 25 O -0.361 6.361 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.143 0.857 32 H 0.137 0.863 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -3.251 5.786 8.380 10.690 hybrid contribution -0.062 -0.416 -0.443 0.611 sum -3.312 5.370 7.938 10.140 Atomic orbital electron populations 1.21755 0.93337 1.02438 1.02365 1.22338 0.96740 1.00166 0.92716 0.89046 1.22613 0.88652 0.94835 0.95693 1.48113 1.31060 1.46762 1.09998 1.18420 0.81251 0.76018 0.85794 1.90638 1.26441 1.53942 1.74512 1.18785 1.06587 1.09904 0.93466 1.21794 0.95174 0.98526 0.96183 1.20991 1.03679 1.00949 0.94552 1.17816 0.89391 0.88031 0.92318 1.19856 0.96821 1.33684 0.96620 0.89728 1.26097 0.95790 0.91940 1.00689 1.69753 1.01956 1.30386 1.36978 0.86247 0.79500 0.79154 0.81709 1.19222 1.19675 1.18037 1.20690 1.04766 1.04976 0.95501 1.20346 0.95888 0.94145 0.93692 1.22730 0.97361 1.00945 0.83329 1.23065 0.94947 0.92746 0.85978 0.90771 1.86500 1.88223 1.39612 1.21806 0.92190 0.92004 0.91778 0.89667 0.90184 0.85742 0.86342 0.90214 0.88438 0.88258 0.90779 0.91402 0.77351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.15 37.16 0.34 -1.11 16 2 C -0.10 -1.21 3.27 -88.79 -0.29 -1.50 16 3 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.10 1.56 4.46 -3.06 -0.01 1.54 16 5 N -0.62 -11.10 3.33 -177.46 -0.59 -11.69 16 6 C 0.59 13.05 7.80 -12.42 -0.10 12.95 16 7 O -0.57 -14.16 16.65 5.29 0.09 -14.07 16 8 C -0.28 -6.63 5.89 -104.73 -0.62 -7.24 16 9 C -0.10 -2.20 8.52 -39.61 -0.34 -2.53 16 10 C -0.18 -4.46 8.65 -39.27 -0.34 -4.80 16 11 C 0.13 3.26 5.59 -106.80 -0.60 2.67 16 12 C -0.44 -11.00 9.04 -37.75 -0.34 -11.34 16 13 H 0.08 2.01 7.93 -52.49 -0.42 1.60 16 14 C 0.08 1.77 5.09 -17.31 -0.09 1.68 16 15 N -0.77 -18.14 11.01 55.56 0.61 -17.52 16 16 Si 0.91 17.08 29.61 -169.99 -5.03 12.05 16 17 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 18 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 19 H -0.26 -4.83 7.11 56.52 0.40 -4.42 16 20 C -0.24 -5.87 9.73 -39.27 -0.38 -6.26 16 21 C -0.02 -0.52 9.52 -39.61 -0.38 -0.89 16 22 C 0.08 1.16 6.62 -2.53 -0.02 1.15 16 23 C 0.09 1.08 3.88 -24.58 -0.10 0.99 16 24 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 25 O -0.56 -5.82 13.47 -35.23 -0.47 -6.30 16 26 H 0.06 0.62 8.12 -51.93 -0.42 0.19 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 1.32 6.30 -51.93 -0.33 0.99 16 30 H 0.08 1.19 6.81 -51.93 -0.35 0.84 16 31 H 0.13 2.35 2.71 -59.91 -0.16 2.19 16 32 H 0.12 2.91 6.14 -52.49 -0.32 2.58 16 33 H 0.29 6.05 8.29 -40.82 -0.34 5.71 16 34 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 35 H 0.10 2.31 7.65 -52.49 -0.40 1.91 16 36 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.38 2.34 9.12 45.56 0.42 2.75 16 LS Contribution 312.42 15.07 4.71 4.71 Total: -1.00 -29.83 312.42 -8.02 -37.84 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -4.07 Total: 9.68 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -3.25 Total: -14.69 kcal Atomic # 7 Polarization: -29.24 SS G_CDS: 0.02 Total: -29.21 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.39 Total: -20.37 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.03 Total: 12.05 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.83 -8.02 -37.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351853057.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.201 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds