Wall clock time and date at job start Mon Mar 30 2020 02:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.64358 * 2 1 4 4 C 1.54321 * 110.72178 * 236.85591 * 2 1 3 5 5 N 1.47023 * 107.27322 * 219.27416 * 4 2 1 6 6 C 1.34778 * 125.64906 * 178.90902 * 5 4 2 7 7 O 1.21588 * 119.99517 * 174.90369 * 6 5 4 8 8 C 1.47636 * 120.00108 * 354.90214 * 6 5 4 9 9 C 1.40012 * 119.89558 * 7.42061 * 8 6 5 10 10 C 1.36314 * 120.10907 * 179.71716 * 9 8 6 11 11 C 1.40894 * 119.89155 * 0.57328 * 10 9 8 12 12 C 1.41100 * 120.10728 * 179.67426 * 11 10 9 13 13 H 1.08001 * 120.00046 * 156.90436 * 12 11 10 14 14 C 1.40226 * 120.00024 * 336.90973 * 12 11 10 15 15 N 1.30638 * 120.00040 * 339.57342 * 14 12 11 16 16 Si 1.86806 * 119.99945 * 159.57179 * 14 12 11 17 17 H 1.48492 * 109.47240 * 94.72960 * 16 14 12 18 18 H 1.48506 * 109.46924 * 214.72650 * 16 14 12 19 19 H 1.48495 * 109.47056 * 334.72579 * 16 14 12 20 20 C 1.40892 * 119.78955 * 359.70152 * 11 10 9 21 21 C 1.36320 * 119.89244 * 359.97438 * 20 11 10 22 22 C 1.47423 * 108.70090 * 358.93667 * 5 4 2 23 23 C 1.54908 * 104.83204 * 24.13332 * 22 5 4 24 24 H 1.08999 * 111.00743 * 81.06669 * 23 22 5 25 25 O 1.42898 * 111.00451 * 204.91342 * 23 22 5 26 26 H 1.08999 * 109.47509 * 179.29886 * 1 2 3 27 27 H 1.09001 * 109.47313 * 299.30241 * 1 2 3 28 28 H 1.09005 * 109.46761 * 59.30425 * 1 2 3 29 29 H 1.09004 * 109.88478 * 338.68706 * 4 2 1 30 30 H 1.08992 * 109.88327 * 99.69733 * 4 2 1 31 31 H 1.08000 * 119.94526 * 359.97438 * 9 8 6 32 32 H 1.07998 * 120.06149 * 180.25355 * 10 9 8 33 33 H 0.96998 * 120.00406 * 180.02562 * 15 14 12 34 34 H 1.08001 * 120.05491 * 179.97438 * 20 11 10 35 35 H 1.07998 * 119.94536 * 180.02562 * 21 20 11 36 36 H 1.08997 * 110.36789 * 142.97258 * 22 5 4 37 37 H 1.09005 * 110.37080 * 265.18075 * 22 5 4 38 38 H 0.96701 * 114.00467 * 292.19953 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7892 -1.2085 5 7 3.2470 -1.5463 -0.7425 6 6 3.9948 -2.3779 -1.4946 7 8 4.9983 -2.8821 -1.0286 8 6 3.5955 -2.6767 -2.8842 9 6 2.5323 -1.9791 -3.4701 10 6 2.1637 -2.2474 -4.7547 11 6 2.8467 -3.2371 -5.4891 12 6 2.4645 -3.5233 -6.8168 13 1 3.1709 -3.9769 -7.4963 14 6 1.1674 -3.2188 -7.2542 15 7 0.2067 -3.0539 -6.3845 16 14 0.8134 -3.0487 -9.0805 17 1 0.3126 -4.3424 -9.6102 18 1 -0.2141 -1.9971 -9.2897 19 1 2.0602 -2.6712 -9.7933 20 6 3.9122 -3.9404 -4.8932 21 6 4.2779 -3.6604 -3.6102 22 6 3.4673 -1.2456 0.6838 23 6 2.0827 -0.7949 1.2125 24 1 1.4513 -1.6546 1.4367 25 8 2.2214 0.0485 2.3576 26 1 -0.3634 -1.0275 -0.0126 27 1 -0.3634 0.5030 0.8962 28 1 -0.3633 0.5246 -0.8837 29 1 1.3141 -1.4754 -1.5781 30 1 2.3687 -0.0994 -2.0001 31 1 2.0061 -1.2243 -2.9047 32 1 1.3462 -1.7060 -5.2073 33 1 -0.6906 -2.8436 -6.6870 34 1 4.4384 -4.7002 -5.4520 35 1 5.0948 -4.1988 -3.1527 36 1 3.8029 -2.1379 1.2122 37 1 4.1969 -0.4433 0.7942 38 1 2.5638 -0.4042 3.1405 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351853057.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:09 Heat of formation + Delta-G solvation = -69.629183 kcal Electronic energy + Delta-G solvation = -21038.760238 eV Core-core repulsion = 17845.434027 eV Total energy + Delta-G solvation = -3193.326211 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.43812 -39.48440 -38.64847 -36.68427 -35.69096 -33.58224 -32.37318 -31.37680 -29.77266 -27.81465 -27.27803 -24.50191 -23.07654 -22.72443 -21.33350 -20.75342 -19.34664 -18.62591 -18.06116 -17.29776 -16.90539 -16.45688 -15.93872 -15.56449 -15.40533 -14.99233 -14.82704 -14.42971 -14.16267 -14.11046 -14.01672 -13.70248 -13.32400 -13.10653 -12.99583 -12.81082 -12.63240 -12.50549 -12.34168 -12.06857 -11.78282 -11.45403 -11.21912 -11.12028 -10.97731 -10.65166 -9.77393 -9.57491 -9.39993 -8.82313 -6.48381 0.42757 1.14986 1.37946 1.42428 1.55142 1.98090 2.06081 2.17262 2.73611 3.16455 3.37857 3.52735 3.67911 3.95165 4.08140 4.16259 4.26508 4.41012 4.45759 4.48351 4.53847 4.69261 4.78383 4.85700 4.93401 5.01261 5.02344 5.12959 5.20246 5.29156 5.36310 5.39231 5.59000 5.82164 5.94387 6.00763 6.21180 6.50868 6.53958 6.75861 6.81161 6.89197 7.29346 8.13433 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.024586 B = 0.004590 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.583979 B = 6099.162570 C = 7112.707744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 H 0.097 0.903 4 C 0.097 3.903 5 N -0.620 5.620 6 C 0.583 3.417 7 O -0.607 6.607 8 C -0.298 4.298 9 C -0.090 4.090 10 C -0.201 4.201 11 C 0.100 3.900 12 C -0.473 4.473 13 H 0.084 0.916 14 C 0.042 3.958 15 N -0.791 5.791 16 Si 0.986 3.014 17 H -0.261 1.261 18 H -0.259 1.259 19 H -0.259 1.259 20 C -0.256 4.256 21 C -0.033 4.033 22 C 0.074 3.926 23 C 0.109 3.891 24 H 0.086 0.914 25 O -0.560 6.560 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.160 0.840 32 H 0.115 0.885 33 H 0.299 0.701 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.048 6.960 8.992 12.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 H 0.115 0.885 4 C -0.025 4.025 5 N -0.354 5.354 6 C 0.379 3.621 7 O -0.492 6.492 8 C -0.302 4.302 9 C -0.108 4.108 10 C -0.221 4.221 11 C 0.097 3.903 12 C -0.500 4.500 13 H 0.102 0.898 14 C -0.179 4.179 15 N -0.414 5.414 16 Si 0.805 3.195 17 H -0.185 1.185 18 H -0.183 1.183 19 H -0.182 1.182 20 C -0.275 4.275 21 C -0.052 4.052 22 C -0.049 4.049 23 C 0.049 3.951 24 H 0.104 0.896 25 O -0.368 6.368 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.176 0.824 32 H 0.133 0.867 33 H 0.110 0.890 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -4.989 7.146 8.848 12.419 hybrid contribution 0.471 -0.813 -0.453 1.043 sum -4.518 6.333 8.396 11.446 Atomic orbital electron populations 1.21744 0.91680 1.02756 1.03347 1.22288 0.97913 0.99726 0.91169 0.88518 1.22744 0.87488 0.94760 0.97528 1.48058 1.30800 1.45261 1.11256 1.18238 0.81366 0.76750 0.85709 1.90606 1.27951 1.55598 1.75071 1.19083 1.06780 1.09805 0.94520 1.22162 0.94477 0.98505 0.95610 1.21047 1.04156 1.01359 0.95503 1.18175 0.90095 0.88802 0.93214 1.20132 0.98074 1.35050 0.96698 0.89752 1.26912 0.94807 0.90877 1.05265 1.69756 1.02726 1.29764 1.39155 0.85133 0.79312 0.79520 0.75525 1.18517 1.18310 1.18249 1.20825 1.05223 1.05549 0.95896 1.20488 0.96208 0.94733 0.93809 1.22987 0.99610 1.00948 0.81317 1.22872 0.92808 0.93069 0.86400 0.89632 1.86468 1.88258 1.39831 1.22197 0.92212 0.90797 0.91079 0.90008 0.90068 0.82376 0.86693 0.88969 0.87883 0.88245 0.91137 0.91245 0.75006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.15 71.98 0.66 -1.73 16 2 C -0.09 -1.94 3.27 -9.61 -0.03 -1.97 16 3 H 0.10 1.99 8.14 -2.39 -0.02 1.98 16 4 C 0.10 2.70 4.46 86.73 0.39 3.09 16 5 N -0.62 -21.53 3.33 -833.63 -2.77 -24.30 16 6 C 0.58 26.07 7.80 86.72 0.68 26.75 16 7 O -0.61 -30.51 16.65 -3.99 -0.07 -30.58 16 8 C -0.30 -14.16 5.89 -19.94 -0.12 -14.28 16 9 C -0.09 -4.02 8.52 22.25 0.19 -3.83 16 10 C -0.20 -9.99 8.65 22.47 0.19 -9.80 16 11 C 0.10 5.27 5.59 -21.28 -0.12 5.15 16 12 C -0.47 -23.94 9.04 23.46 0.21 -23.73 16 13 H 0.08 4.11 7.93 -2.91 -0.02 4.09 16 14 C 0.04 1.90 5.09 85.35 0.43 2.34 16 15 N -0.79 -37.07 11.01 21.87 0.24 -36.83 16 16 Si 0.99 34.24 29.61 68.60 2.03 36.27 16 17 H -0.26 -8.75 7.11 99.48 0.71 -8.04 16 18 H -0.26 -8.41 7.11 99.48 0.71 -7.70 16 19 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 20 C -0.26 -12.98 9.73 22.47 0.22 -12.77 16 21 C -0.03 -1.65 9.52 22.25 0.21 -1.44 16 22 C 0.07 2.04 6.62 86.86 0.58 2.62 16 23 C 0.11 2.23 3.88 31.99 0.12 2.35 16 24 H 0.09 1.62 8.05 -2.39 -0.02 1.60 16 25 O -0.56 -9.81 13.47 -148.98 -2.01 -11.81 16 26 H 0.06 1.05 8.12 -2.39 -0.02 1.03 16 27 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.08 2.39 6.30 -2.39 -0.02 2.37 16 30 H 0.08 2.28 6.81 -2.39 -0.02 2.27 16 31 H 0.16 5.83 2.71 -9.88 -0.03 5.80 16 32 H 0.12 5.70 6.14 -2.91 -0.02 5.68 16 33 H 0.30 12.30 8.29 -92.71 -0.77 11.54 16 34 H 0.10 4.92 8.06 -2.91 -0.02 4.90 16 35 H 0.10 4.83 7.65 -2.91 -0.02 4.81 16 36 H 0.07 1.99 8.09 -2.39 -0.02 1.97 16 37 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.40 3.56 9.12 -74.06 -0.68 2.89 16 Total: -1.00 -64.91 312.42 1.44 -63.47 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: 0.40 Total: 31.01 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 3.61 Total: -27.23 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: -2.53 Total: -61.13 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -2.07 Total: -42.39 kcal Atomic # 14 Polarization: 34.24 SS G_CDS: 2.03 Total: 36.27 kcal Total: -64.91 1.44 -63.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351853057.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.158 kcal (2) G-P(sol) polarization free energy of solvation -64.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds