Wall clock time and date at job start Mon Mar 30 2020 02:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.64464 * 2 1 4 4 C 1.54319 * 110.72244 * 123.14699 * 2 1 3 5 5 N 1.47017 * 107.27475 * 140.55594 * 4 2 1 6 6 C 1.34780 * 125.64933 * 181.02126 * 5 4 2 7 7 O 1.21544 * 120.00239 * 6.22818 * 6 5 4 8 8 C 1.47887 * 119.99989 * 186.23396 * 6 5 4 9 9 C 1.39916 * 120.02652 * 197.10792 * 8 6 5 10 10 C 1.38332 * 120.36054 * 179.97438 * 9 8 6 11 11 C 1.37752 * 120.41284 * 359.79042 * 10 9 8 12 12 C 1.40753 * 120.03575 * 0.46240 * 11 10 9 13 13 C 1.41440 * 120.17538 * 179.78995 * 12 11 10 14 14 H 1.08001 * 119.99687 * 157.54615 * 13 12 11 15 15 C 1.39943 * 119.99700 * 337.81317 * 13 12 11 16 16 N 1.30819 * 120.00000 * 327.81493 * 15 13 12 17 17 Si 1.86797 * 119.99265 * 147.81061 * 15 13 12 18 18 H 1.48500 * 109.47190 * 94.99317 * 17 15 13 19 19 H 1.48506 * 109.47042 * 214.98711 * 17 15 13 20 20 H 1.48498 * 109.47810 * 334.99126 * 17 15 13 21 21 C 1.38999 * 120.02390 * 17.12598 * 8 6 5 22 22 C 1.47422 * 108.70463 * 1.28650 * 5 4 2 23 23 C 1.55137 * 104.71887 * 335.55475 * 22 5 4 24 24 H 1.09003 * 111.18659 * 279.19154 * 23 22 5 25 25 O 1.42899 * 110.93689 * 155.29167 * 23 22 5 26 26 H 1.09000 * 109.46510 * 298.30683 * 1 2 3 27 27 H 1.08996 * 109.47490 * 58.31030 * 1 2 3 28 28 H 1.09006 * 109.46766 * 178.31378 * 1 2 3 29 29 H 1.08999 * 109.88520 * 21.13587 * 4 2 1 30 30 H 1.09000 * 110.00976 * 260.04398 * 4 2 1 31 31 H 1.08005 * 119.82038 * 0.02562 * 9 8 6 32 32 H 1.08005 * 119.79436 * 180.02562 * 10 9 8 33 33 H 1.08000 * 119.98458 * 180.25556 * 11 10 9 34 34 H 0.97002 * 119.99453 * 180.02562 * 16 15 13 35 35 H 1.07991 * 120.20558 * 359.95821 * 21 8 6 36 36 H 1.08996 * 110.36873 * 94.47970 * 22 5 4 37 37 H 1.09002 * 110.36826 * 216.80639 * 22 5 4 38 38 H 0.96698 * 114.00117 * 67.96224 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7892 1.2085 5 7 3.2445 -1.5495 0.7415 6 6 3.9924 -2.3811 1.4936 7 8 3.6545 -2.6404 2.6320 8 6 5.2241 -2.9781 0.9338 9 6 5.8035 -4.0935 1.5486 10 6 6.9554 -4.6577 1.0305 11 6 7.5430 -4.1311 -0.0987 12 6 6.9775 -3.0061 -0.7277 13 6 7.5809 -2.4603 -1.8847 14 1 6.9962 -1.8612 -2.5671 15 6 8.9340 -2.7012 -2.1480 16 7 9.7781 -2.8411 -1.1584 17 14 9.5347 -2.8231 -3.9126 18 1 10.0494 -1.5015 -4.3526 19 1 10.6222 -3.8308 -3.9968 20 1 8.4101 -3.2338 -4.7912 21 6 5.8074 -2.4313 -0.2032 22 6 3.4666 -1.2467 -0.6841 23 6 2.0789 -0.7974 -1.2125 24 1 1.4452 -1.6560 -1.4347 25 8 2.2171 0.0442 -2.3590 26 1 -0.3632 0.4873 0.9048 27 1 -0.3634 0.5398 -0.8744 28 1 -0.3633 -1.0273 -0.0302 29 1 1.3130 -1.4732 1.5800 30 1 2.3737 -0.1011 1.9997 31 1 5.3485 -4.5167 2.4319 32 1 7.3947 -5.5189 1.5121 33 1 8.4399 -4.5797 -0.4996 34 1 10.7161 -3.0078 -1.3411 35 1 5.3635 -1.5707 -0.6813 36 1 4.1947 -0.4428 -0.7922 37 1 3.8032 -2.1382 -1.2133 38 1 2.5570 -0.4103 -3.1419 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351858798.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:13 Heat of formation + Delta-G solvation = -58.908452 kcal Electronic energy + Delta-G solvation = -21162.738133 eV Core-core repulsion = 17969.876808 eV Total energy + Delta-G solvation = -3192.861325 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.06841 -38.06898 -36.97773 -35.43303 -33.78421 -32.85125 -30.05217 -29.83474 -28.56216 -26.34859 -25.35406 -23.52332 -21.70548 -20.87194 -20.25311 -19.35454 -17.68090 -17.29162 -16.17361 -15.78018 -15.36325 -14.96520 -14.84643 -14.41903 -14.12585 -13.51003 -13.30699 -13.12028 -12.99643 -12.76514 -12.34318 -12.24941 -12.18394 -11.76185 -11.54544 -11.33148 -11.17430 -11.13016 -10.82881 -10.59921 -10.45835 -10.21631 -10.10676 -9.57872 -9.13363 -9.09245 -8.36707 -7.68835 -7.62332 -7.01464 -4.45063 2.15080 2.69692 2.99389 3.01445 3.11900 3.25008 3.73307 3.82171 4.10630 4.38894 4.45108 4.58957 4.86469 5.17078 5.26716 5.37303 5.40063 5.49830 5.64192 5.71087 5.77974 5.89871 5.94299 5.99377 6.14599 6.17974 6.41415 6.53587 6.73489 6.83385 6.95210 7.08828 7.31434 7.53854 7.62204 7.75554 7.82973 7.95889 8.03670 8.42012 8.70076 8.72812 8.79555 9.96172 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.018489 B = 0.005513 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.009867 B = 5077.746502 C = 6397.020321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 H 0.093 0.907 4 C 0.114 3.886 5 N -0.617 5.617 6 C 0.581 3.419 7 O -0.553 6.553 8 C -0.109 4.109 9 C -0.186 4.186 10 C -0.107 4.107 11 C -0.154 4.154 12 C 0.106 3.894 13 C -0.473 4.473 14 H 0.082 0.918 15 C 0.089 3.911 16 N -0.771 5.771 17 Si 0.896 3.104 18 H -0.269 1.269 19 H -0.274 1.274 20 H -0.257 1.257 21 C -0.212 4.212 22 C 0.070 3.930 23 C 0.090 3.910 24 H 0.074 0.926 25 O -0.556 6.556 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.284 0.716 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.627 3.300 -3.694 11.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 H 0.111 0.889 4 C -0.009 4.009 5 N -0.353 5.353 6 C 0.374 3.626 7 O -0.432 6.432 8 C -0.112 4.112 9 C -0.206 4.206 10 C -0.125 4.125 11 C -0.174 4.174 12 C 0.103 3.897 13 C -0.501 4.501 14 H 0.100 0.900 15 C -0.133 4.133 16 N -0.394 5.394 17 Si 0.719 3.281 18 H -0.194 1.194 19 H -0.199 1.199 20 H -0.181 1.181 21 C -0.231 4.231 22 C -0.053 4.053 23 C 0.030 3.970 24 H 0.092 0.908 25 O -0.361 6.361 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.095 0.905 35 H 0.134 0.866 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -10.741 3.536 -2.539 11.589 hybrid contribution 0.835 -0.450 -1.085 1.441 sum -9.906 3.086 -3.624 10.990 Atomic orbital electron populations 1.21744 0.93520 1.02173 1.02269 1.22217 0.96499 1.00210 0.92671 0.88856 1.21948 0.88258 0.94490 0.96229 1.48140 1.30329 1.45716 1.11112 1.18662 0.82910 0.76628 0.84360 1.90668 1.72295 1.61403 1.18843 1.19251 0.94842 0.98831 0.98259 1.20382 0.98933 0.99342 1.01948 1.20617 0.95681 0.99212 0.96989 1.21293 1.01154 0.97397 0.97541 1.17482 0.90448 0.90270 0.91488 1.19445 0.94336 1.29773 1.06509 0.89999 1.25905 0.96728 0.91771 0.98905 1.69915 1.04395 1.30949 1.34110 0.86508 0.79228 0.79071 0.83269 1.19448 1.19894 1.18109 1.21773 1.01278 1.02387 0.97709 1.23457 0.97231 1.02315 0.82300 1.23175 0.95202 0.92620 0.86011 0.90816 1.86471 1.88333 1.39564 1.21780 0.92137 0.91810 0.92408 0.91293 0.91397 0.88193 0.88666 0.87399 0.90485 0.86567 0.89887 0.88675 0.76883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.13 37.16 0.34 -0.95 16 2 C -0.10 -1.12 3.28 -88.79 -0.29 -1.41 16 3 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.11 1.61 6.47 -3.07 -0.02 1.59 16 5 N -0.62 -10.76 3.32 -171.48 -0.57 -11.33 16 6 C 0.58 12.57 7.72 -12.31 -0.09 12.47 16 7 O -0.55 -13.22 16.80 5.33 0.09 -13.14 16 8 C -0.11 -2.51 5.78 -105.04 -0.61 -3.12 16 9 C -0.19 -4.35 9.59 -38.92 -0.37 -4.72 16 10 C -0.11 -2.46 10.01 -39.72 -0.40 -2.86 16 11 C -0.15 -3.83 8.79 -38.81 -0.34 -4.17 16 12 C 0.11 2.64 5.57 -106.87 -0.59 2.05 16 13 C -0.47 -11.63 8.95 -37.73 -0.34 -11.97 16 14 H 0.08 1.90 8.01 -52.49 -0.42 1.48 16 15 C 0.09 2.09 4.78 -17.34 -0.08 2.01 16 16 N -0.77 -18.97 11.78 55.55 0.65 -18.31 16 17 Si 0.90 17.32 29.66 -169.99 -5.04 12.28 16 18 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 19 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 20 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 21 C -0.21 -4.87 7.88 -38.44 -0.30 -5.17 16 22 C 0.07 1.05 4.66 -2.41 -0.01 1.04 16 23 C 0.09 1.06 3.89 -24.46 -0.10 0.97 16 24 H 0.07 0.81 8.04 -51.93 -0.42 0.39 16 25 O -0.56 -6.23 13.47 -35.23 -0.47 -6.71 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 29 H 0.07 0.96 7.82 -51.93 -0.41 0.55 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.10 2.27 7.73 -52.48 -0.41 1.86 16 32 H 0.10 1.94 8.06 -52.48 -0.42 1.52 16 33 H 0.11 2.71 6.52 -52.49 -0.34 2.37 16 34 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 35 H 0.12 2.40 3.91 -52.49 -0.21 2.20 16 36 H 0.08 1.29 7.00 -51.93 -0.36 0.93 16 37 H 0.10 1.49 6.46 -51.93 -0.34 1.15 16 38 H 0.38 2.87 9.12 45.56 0.42 3.28 16 LS Contribution 314.51 15.07 4.74 4.74 Total: -1.00 -29.63 314.51 -7.96 -37.59 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -4.15 Total: 9.13 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -3.21 Total: -14.25 kcal Atomic # 7 Polarization: -29.73 SS G_CDS: 0.08 Total: -29.64 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.39 Total: -19.84 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.04 Total: 12.28 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.63 -7.96 -37.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351858798.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.316 kcal (2) G-P(sol) polarization free energy of solvation -29.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds