Wall clock time and date at job start Mon Mar 30 2020 02:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.64464 * 2 1 4 4 C 1.54319 * 110.72244 * 123.14699 * 2 1 3 5 5 N 1.47017 * 107.27475 * 140.55594 * 4 2 1 6 6 C 1.34780 * 125.64933 * 181.02126 * 5 4 2 7 7 O 1.21544 * 120.00239 * 6.22818 * 6 5 4 8 8 C 1.47887 * 119.99989 * 186.23396 * 6 5 4 9 9 C 1.39916 * 120.02652 * 197.10792 * 8 6 5 10 10 C 1.38332 * 120.36054 * 179.97438 * 9 8 6 11 11 C 1.37752 * 120.41284 * 359.79042 * 10 9 8 12 12 C 1.40753 * 120.03575 * 0.46240 * 11 10 9 13 13 C 1.41440 * 120.17538 * 179.78995 * 12 11 10 14 14 H 1.08001 * 119.99687 * 157.54615 * 13 12 11 15 15 C 1.39943 * 119.99700 * 337.81317 * 13 12 11 16 16 N 1.30819 * 120.00000 * 327.81493 * 15 13 12 17 17 Si 1.86797 * 119.99265 * 147.81061 * 15 13 12 18 18 H 1.48500 * 109.47190 * 94.99317 * 17 15 13 19 19 H 1.48506 * 109.47042 * 214.98711 * 17 15 13 20 20 H 1.48498 * 109.47810 * 334.99126 * 17 15 13 21 21 C 1.38999 * 120.02390 * 17.12598 * 8 6 5 22 22 C 1.47422 * 108.70463 * 1.28650 * 5 4 2 23 23 C 1.55137 * 104.71887 * 335.55475 * 22 5 4 24 24 H 1.09003 * 111.18659 * 279.19154 * 23 22 5 25 25 O 1.42899 * 110.93689 * 155.29167 * 23 22 5 26 26 H 1.09000 * 109.46510 * 298.30683 * 1 2 3 27 27 H 1.08996 * 109.47490 * 58.31030 * 1 2 3 28 28 H 1.09006 * 109.46766 * 178.31378 * 1 2 3 29 29 H 1.08999 * 109.88520 * 21.13587 * 4 2 1 30 30 H 1.09000 * 110.00976 * 260.04398 * 4 2 1 31 31 H 1.08005 * 119.82038 * 0.02562 * 9 8 6 32 32 H 1.08005 * 119.79436 * 180.02562 * 10 9 8 33 33 H 1.08000 * 119.98458 * 180.25556 * 11 10 9 34 34 H 0.97002 * 119.99453 * 180.02562 * 16 15 13 35 35 H 1.07991 * 120.20558 * 359.95821 * 21 8 6 36 36 H 1.08996 * 110.36873 * 94.47970 * 22 5 4 37 37 H 1.09002 * 110.36826 * 216.80639 * 22 5 4 38 38 H 0.96698 * 114.00117 * 67.96224 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7892 1.2085 5 7 3.2445 -1.5495 0.7415 6 6 3.9924 -2.3811 1.4936 7 8 3.6545 -2.6404 2.6320 8 6 5.2241 -2.9781 0.9338 9 6 5.8035 -4.0935 1.5486 10 6 6.9554 -4.6577 1.0305 11 6 7.5430 -4.1311 -0.0987 12 6 6.9775 -3.0061 -0.7277 13 6 7.5809 -2.4603 -1.8847 14 1 6.9962 -1.8612 -2.5671 15 6 8.9340 -2.7012 -2.1480 16 7 9.7781 -2.8411 -1.1584 17 14 9.5347 -2.8231 -3.9126 18 1 10.0494 -1.5015 -4.3526 19 1 10.6222 -3.8308 -3.9968 20 1 8.4101 -3.2338 -4.7912 21 6 5.8074 -2.4313 -0.2032 22 6 3.4666 -1.2467 -0.6841 23 6 2.0789 -0.7974 -1.2125 24 1 1.4452 -1.6560 -1.4347 25 8 2.2171 0.0442 -2.3590 26 1 -0.3632 0.4873 0.9048 27 1 -0.3634 0.5398 -0.8744 28 1 -0.3633 -1.0273 -0.0302 29 1 1.3130 -1.4732 1.5800 30 1 2.3737 -0.1011 1.9997 31 1 5.3485 -4.5167 2.4319 32 1 7.3947 -5.5189 1.5121 33 1 8.4399 -4.5797 -0.4996 34 1 10.7161 -3.0078 -1.3411 35 1 5.3635 -1.5707 -0.6813 36 1 4.1947 -0.4428 -0.7922 37 1 3.8032 -2.1382 -1.2133 38 1 2.5570 -0.4103 -3.1419 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351858798.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:12 Heat of formation + Delta-G solvation = -78.166368 kcal Electronic energy + Delta-G solvation = -21163.573219 eV Core-core repulsion = 17969.876808 eV Total energy + Delta-G solvation = -3193.696411 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.49098 -39.47792 -38.69738 -36.53556 -35.59134 -34.04046 -31.88750 -31.50556 -29.75161 -27.53661 -27.16985 -24.85737 -23.23331 -22.57019 -21.37607 -20.93845 -19.07955 -18.56439 -17.72575 -17.41056 -16.83207 -16.55952 -16.41514 -15.69628 -15.44555 -14.99634 -14.73255 -14.49527 -14.22552 -14.17709 -13.97198 -13.58754 -13.33499 -13.12003 -13.03115 -12.83229 -12.54598 -12.45431 -12.23687 -12.09045 -11.93240 -11.52598 -11.38878 -11.17405 -10.90259 -10.69722 -9.83773 -9.54174 -9.43880 -8.79838 -6.33057 0.34410 0.93355 1.40633 1.47417 1.58084 1.86417 2.00159 2.20009 2.67080 3.15081 3.34306 3.52973 3.62520 3.87102 3.96123 4.14274 4.30631 4.37671 4.46881 4.58620 4.60322 4.66563 4.77247 4.85012 4.91192 4.97582 5.01254 5.08734 5.15771 5.23301 5.32224 5.36389 5.53283 5.80338 5.93206 5.99650 6.17388 6.35604 6.56308 6.82854 6.84902 6.91572 7.09248 8.21036 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.018489 B = 0.005513 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.009867 B = 5077.746502 C = 6397.020321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.089 4.089 3 H 0.093 0.907 4 C 0.108 3.892 5 N -0.612 5.612 6 C 0.576 3.424 7 O -0.584 6.584 8 C -0.117 4.117 9 C -0.203 4.203 10 C -0.104 4.104 11 C -0.180 4.180 12 C 0.081 3.919 13 C -0.498 4.498 14 H 0.090 0.910 15 C 0.050 3.950 16 N -0.805 5.805 17 Si 0.972 3.028 18 H -0.261 1.261 19 H -0.269 1.269 20 H -0.253 1.253 21 C -0.211 4.211 22 C 0.065 3.935 23 C 0.104 3.896 24 H 0.090 0.910 25 O -0.561 6.561 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.097 0.903 34 H 0.293 0.707 35 H 0.136 0.864 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.733 4.150 -5.433 13.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.108 4.108 3 H 0.112 0.888 4 C -0.014 4.014 5 N -0.345 5.345 6 C 0.368 3.632 7 O -0.466 6.466 8 C -0.120 4.120 9 C -0.223 4.223 10 C -0.122 4.122 11 C -0.199 4.199 12 C 0.078 3.922 13 C -0.525 4.525 14 H 0.108 0.892 15 C -0.169 4.169 16 N -0.428 5.428 17 Si 0.792 3.208 18 H -0.186 1.186 19 H -0.194 1.194 20 H -0.176 1.176 21 C -0.230 4.230 22 C -0.058 4.058 23 C 0.044 3.956 24 H 0.108 0.892 25 O -0.369 6.369 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.136 0.864 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.154 0.846 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -11.869 4.411 -4.311 13.376 hybrid contribution 1.167 -0.657 -0.528 1.440 sum -10.702 3.754 -4.839 12.331 Atomic orbital electron populations 1.21721 0.91330 1.02826 1.03284 1.22205 0.98127 0.99483 0.90973 0.88834 1.22217 0.87101 0.94469 0.97644 1.48135 1.30240 1.44235 1.11928 1.18450 0.83034 0.77463 0.84251 1.90638 1.73044 1.62919 1.20042 1.19543 0.95599 0.98727 0.98159 1.20553 0.99379 1.00004 1.02413 1.20830 0.95377 0.99619 0.96414 1.21297 1.01558 0.98276 0.98794 1.17850 0.91409 0.90770 0.92150 1.19762 0.95267 1.30662 1.06857 0.89220 1.26770 0.96422 0.90656 1.03050 1.69941 1.05158 1.31271 1.36446 0.85357 0.78669 0.79295 0.77480 1.18582 1.19405 1.17630 1.22001 1.00692 1.02735 0.97607 1.23572 0.99591 1.01761 0.80893 1.23044 0.92931 0.93191 0.86414 0.89248 1.86448 1.88327 1.39929 1.22195 0.91010 0.90957 0.91937 0.90751 0.91564 0.87915 0.86414 0.88442 0.89610 0.84649 0.90507 0.89524 0.74931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.13 71.98 0.66 -1.39 16 2 C -0.09 -1.83 3.28 -9.61 -0.03 -1.86 16 3 H 0.09 1.95 8.14 -2.39 -0.02 1.94 16 4 C 0.11 2.89 6.47 86.73 0.56 3.45 16 5 N -0.61 -20.95 3.32 -814.72 -2.71 -23.66 16 6 C 0.58 25.08 7.72 86.80 0.67 25.75 16 7 O -0.58 -28.28 16.80 -3.85 -0.06 -28.35 16 8 C -0.12 -5.50 5.78 -20.13 -0.12 -5.62 16 9 C -0.20 -9.70 9.59 22.70 0.22 -9.48 16 10 C -0.10 -4.90 10.01 22.18 0.22 -4.68 16 11 C -0.18 -9.13 8.79 22.77 0.20 -8.93 16 12 C 0.08 4.11 5.57 -21.32 -0.12 3.99 16 13 C -0.50 -24.60 8.95 23.47 0.21 -24.39 16 14 H 0.09 4.13 8.01 -2.91 -0.02 4.11 16 15 C 0.05 2.36 4.78 85.26 0.41 2.77 16 16 N -0.80 -39.87 11.78 21.83 0.26 -39.62 16 17 Si 0.97 34.87 29.66 68.60 2.03 36.90 16 18 H -0.26 -8.99 7.11 99.48 0.71 -8.29 16 19 H -0.27 -9.39 7.11 99.48 0.71 -8.69 16 20 H -0.25 -8.82 7.11 99.48 0.71 -8.11 16 21 C -0.21 -9.82 7.88 23.01 0.18 -9.64 16 22 C 0.06 1.86 4.66 86.94 0.41 2.26 16 23 C 0.10 2.21 3.89 32.07 0.12 2.33 16 24 H 0.09 1.68 8.04 -2.39 -0.02 1.66 16 25 O -0.56 -10.95 13.47 -148.98 -2.01 -12.95 16 26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 0.91 8.13 -2.38 -0.02 0.89 16 29 H 0.07 1.94 7.82 -2.39 -0.02 1.93 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.10 4.76 7.73 -2.91 -0.02 4.74 16 32 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 33 H 0.10 5.05 6.52 -2.91 -0.02 5.04 16 34 H 0.29 13.02 8.30 -92.71 -0.77 12.25 16 35 H 0.14 5.61 3.91 -2.92 -0.01 5.60 16 36 H 0.08 2.32 7.00 -2.39 -0.02 2.30 16 37 H 0.09 2.65 6.46 -2.39 -0.02 2.63 16 38 H 0.40 4.85 9.12 -74.06 -0.68 4.17 16 Total: -1.00 -63.91 314.51 1.51 -62.40 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: 0.41 Total: 30.71 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: 3.59 Total: -25.43 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: -2.45 Total: -63.28 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -2.07 Total: -41.30 kcal Atomic # 14 Polarization: 34.87 SS G_CDS: 2.03 Total: 36.90 kcal Total: -63.91 1.51 -62.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351858798.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.769 kcal (2) G-P(sol) polarization free energy of solvation -63.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds