Wall clock time and date at job start Mon Mar 30 2020 02:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 110.77767 * 2 1 4 4 C 1.54330 * 110.85403 * 236.93328 * 2 1 3 5 5 N 1.47015 * 107.26778 * 219.67339 * 4 2 1 6 6 C 1.34786 * 125.65161 * 178.84993 * 5 4 2 7 7 O 1.21548 * 119.99350 * 353.14670 * 6 5 4 8 8 C 1.47884 * 119.99982 * 173.15419 * 6 5 4 9 9 C 1.39912 * 120.02797 * 338.58300 * 8 6 5 10 10 C 1.38332 * 120.36056 * 180.28180 * 9 8 6 11 11 C 1.37746 * 120.41011 * 359.97438 * 10 9 8 12 12 C 1.40747 * 120.04054 * 0.02562 * 11 10 9 13 13 C 1.41437 * 120.17649 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00558 * 23.49264 * 13 12 11 15 15 C 1.39943 * 119.99746 * 203.49298 * 13 12 11 16 16 N 1.30822 * 120.00162 * 16.57768 * 15 13 12 17 17 Si 1.86806 * 119.99953 * 196.57403 * 15 13 12 18 18 H 1.48491 * 109.47145 * 60.00297 * 17 15 13 19 19 H 1.48502 * 109.46991 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47017 * 300.00030 * 17 15 13 21 21 C 1.38999 * 120.02076 * 158.85987 * 8 6 5 22 22 C 1.47422 * 108.70493 * 358.57904 * 5 4 2 23 23 C 1.54916 * 104.82784 * 24.35991 * 22 5 4 24 24 H 1.09000 * 111.00228 * 204.87618 * 23 22 5 25 25 O 1.42895 * 111.00425 * 81.06391 * 23 22 5 26 26 H 1.09001 * 109.47265 * 296.76131 * 1 2 3 27 27 H 1.09001 * 109.47647 * 56.76699 * 1 2 3 28 28 H 1.09001 * 109.46993 * 176.75845 * 1 2 3 29 29 H 1.08997 * 109.99770 * 100.19090 * 4 2 1 30 30 H 1.09003 * 109.77600 * 339.02437 * 4 2 1 31 31 H 1.08003 * 119.81765 * 0.25174 * 9 8 6 32 32 H 1.08000 * 119.79345 * 180.02562 * 10 9 8 33 33 H 1.08003 * 119.98207 * 180.02562 * 11 10 9 34 34 H 0.97001 * 120.00681 * 179.97438 * 16 15 13 35 35 H 1.07992 * 120.20213 * 359.69829 * 21 8 6 36 36 H 1.09002 * 110.36902 * 143.19605 * 22 5 4 37 37 H 1.08995 * 110.37257 * 265.51950 * 22 5 4 38 38 H 0.96706 * 113.99949 * 61.45976 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9166 1.0192 0.0000 4 6 2.0793 -0.7869 -1.2086 5 7 3.2445 -1.5506 -0.7390 6 6 3.9924 -2.3835 -1.4898 7 8 3.6510 -2.6496 -2.6255 8 6 5.2282 -2.9735 -0.9315 9 6 5.8675 -2.3632 0.1531 10 6 7.0270 -2.9060 0.6770 11 6 7.5655 -4.0533 0.1376 12 6 6.9365 -4.6813 -0.9537 13 6 7.4872 -5.8593 -1.5102 14 1 8.1323 -6.4878 -0.9141 15 6 7.1962 -6.2104 -2.8332 16 7 6.6987 -5.3197 -3.6521 17 14 7.5183 -7.9510 -3.4300 18 1 6.7203 -8.9072 -2.6214 19 1 7.1287 -8.0645 -4.8585 20 1 8.9625 -8.2648 -3.2849 21 6 5.7588 -4.1316 -1.4878 22 6 3.4633 -1.2497 0.6875 23 6 2.0789 -0.7954 1.2138 24 1 2.1849 -0.1523 2.0874 25 8 1.2481 -1.9204 1.5070 26 1 -0.3634 0.4627 0.9176 27 1 -0.3634 0.5632 -0.8596 28 1 -0.3633 -1.0260 -0.0581 29 1 2.3814 -0.0969 -1.9965 30 1 1.3156 -1.4687 -1.5828 31 1 5.4536 -1.4632 0.5834 32 1 7.5127 -2.4276 1.5147 33 1 8.4709 -4.4714 0.5524 34 1 6.4974 -5.5629 -4.5693 35 1 5.2685 -4.6062 -2.3248 36 1 3.7961 -2.1425 1.2169 37 1 4.1931 -0.4478 0.7985 38 1 1.6016 -2.5020 2.1940 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351858803.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:18 Heat of formation + Delta-G solvation = -57.739497 kcal Electronic energy + Delta-G solvation = -21244.873431 eV Core-core repulsion = 18052.062796 eV Total energy + Delta-G solvation = -3192.810636 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.01583 -38.04966 -36.84897 -35.07280 -33.80531 -32.63573 -30.11609 -29.44523 -28.77204 -26.49114 -25.19219 -23.45661 -21.64936 -20.89021 -20.10770 -19.08638 -17.81579 -17.21385 -15.93040 -15.82565 -15.38329 -14.83522 -14.72660 -14.41053 -13.91886 -13.57654 -13.20228 -13.05564 -12.87704 -12.61432 -12.39893 -12.17352 -12.04493 -11.66037 -11.39700 -11.18149 -11.10082 -11.02220 -10.77804 -10.59650 -10.41341 -10.10512 -9.99964 -9.63792 -9.22201 -8.95976 -8.21859 -7.62017 -7.50517 -6.77302 -4.41560 2.25531 2.82087 3.07375 3.09233 3.16606 3.43842 3.80239 3.91705 4.04223 4.47537 4.50650 4.61646 4.82173 5.21178 5.31598 5.41607 5.49006 5.58504 5.63457 5.70544 5.78576 5.88190 6.01121 6.05266 6.11784 6.31547 6.33059 6.61064 6.78034 6.99029 7.06139 7.22824 7.38704 7.57568 7.69049 7.80112 7.92708 8.05995 8.18069 8.50822 8.80384 8.83978 8.93436 10.15611 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.027139 B = 0.004696 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.489849 B = 5961.489812 C = 6494.835246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 H 0.092 0.908 4 C 0.115 3.885 5 N -0.618 5.618 6 C 0.578 3.422 7 O -0.541 6.541 8 C -0.122 4.122 9 C -0.233 4.233 10 C -0.099 4.099 11 C -0.213 4.213 12 C 0.099 3.901 13 C -0.460 4.460 14 H 0.080 0.920 15 C 0.072 3.928 16 N -0.782 5.782 17 Si 0.911 3.089 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.265 1.265 21 C -0.097 4.097 22 C 0.074 3.926 23 C 0.088 3.912 24 H 0.076 0.924 25 O -0.553 6.553 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.285 0.715 35 H 0.135 0.865 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.859 8.174 8.838 14.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.116 4.116 3 H 0.111 0.889 4 C -0.008 4.008 5 N -0.353 5.353 6 C 0.371 3.629 7 O -0.418 6.418 8 C -0.126 4.126 9 C -0.253 4.253 10 C -0.117 4.117 11 C -0.233 4.233 12 C 0.096 3.904 13 C -0.489 4.489 14 H 0.099 0.901 15 C -0.147 4.147 16 N -0.406 5.406 17 Si 0.735 3.265 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.189 1.189 21 C -0.117 4.117 22 C -0.049 4.049 23 C 0.028 3.972 24 H 0.094 0.906 25 O -0.358 6.358 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.122 0.878 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.152 0.848 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -8.435 8.271 7.417 13.949 hybrid contribution 0.695 -0.840 0.095 1.095 sum -7.739 7.431 7.512 13.097 Atomic orbital electron populations 1.21547 0.93236 1.02908 1.01270 1.22316 0.97373 0.98448 0.93439 0.88946 1.21893 0.88552 0.94371 0.95937 1.48235 1.30441 1.46015 1.10643 1.18666 0.82998 0.76687 0.84519 1.90715 1.71929 1.60234 1.18932 1.19408 0.95137 0.99078 0.98939 1.20881 1.00501 1.02968 1.00903 1.20442 0.95892 0.96567 0.98837 1.21090 1.01093 0.98227 1.02920 1.17580 0.90061 0.92042 0.90682 1.19573 1.26365 1.06362 0.96568 0.90143 1.25986 0.93046 0.98959 0.96744 1.69783 1.30560 1.34271 1.05991 0.86314 0.79797 0.82231 0.78114 1.18740 1.20199 1.18949 1.21675 0.95311 0.94748 0.99952 1.23319 0.96626 1.01755 0.83241 1.23062 0.89417 0.88036 0.96655 0.90594 1.86486 1.48582 1.38763 1.62014 0.92479 0.92764 0.91396 0.91979 0.91431 0.87803 0.89008 0.88714 0.90330 0.84783 0.89056 0.90591 0.77235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 8.76 37.15 0.33 -0.99 16 2 C -0.10 -1.06 3.46 -88.79 -0.31 -1.37 16 3 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.12 1.75 6.48 -3.06 -0.02 1.73 16 5 N -0.62 -11.08 3.33 -171.61 -0.57 -11.66 16 6 C 0.58 13.44 7.67 -12.31 -0.09 13.34 16 7 O -0.54 -14.46 16.87 5.32 0.09 -14.37 16 8 C -0.12 -2.96 5.71 -105.04 -0.60 -3.56 16 9 C -0.23 -4.91 8.12 -38.92 -0.32 -5.23 16 10 C -0.10 -2.10 10.01 -39.73 -0.40 -2.50 16 11 C -0.21 -5.08 9.78 -38.81 -0.38 -5.45 16 12 C 0.10 2.64 5.59 -106.87 -0.60 2.04 16 13 C -0.46 -12.16 9.06 -37.73 -0.34 -12.50 16 14 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 15 C 0.07 1.84 5.18 -17.34 -0.09 1.75 16 16 N -0.78 -21.10 10.81 55.55 0.60 -20.50 16 17 Si 0.91 18.91 29.59 -169.99 -5.03 13.88 16 18 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 19 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 21 C -0.10 -2.63 8.24 -38.44 -0.32 -2.94 16 22 C 0.07 1.01 4.68 -2.53 -0.01 0.99 16 23 C 0.09 0.94 4.17 -24.58 -0.10 0.84 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 25 O -0.55 -6.39 12.22 -35.23 -0.43 -6.82 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.80 7.45 -51.93 -0.39 0.41 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.11 7.77 -51.93 -0.40 0.71 16 31 H 0.10 1.83 4.29 -52.48 -0.23 1.60 16 32 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 33 H 0.09 2.09 8.06 -52.48 -0.42 1.67 16 34 H 0.29 7.11 8.30 -40.82 -0.34 6.77 16 35 H 0.13 3.95 5.76 -52.49 -0.30 3.65 16 36 H 0.09 1.30 6.75 -51.93 -0.35 0.95 16 37 H 0.08 0.94 6.84 -51.93 -0.36 0.58 16 38 H 0.38 3.08 9.11 45.56 0.42 3.49 16 LS Contribution 312.02 15.07 4.70 4.70 Total: -1.00 -31.93 312.02 -8.00 -39.93 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -4.12 Total: 8.70 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -3.25 Total: -13.87 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 0.03 Total: -32.15 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.34 Total: -21.19 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.93 -8.00 -39.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351858803.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.805 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds