Wall clock time and date at job start Mon Mar 30 2020 02:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 110.77767 * 2 1 4 4 C 1.54330 * 110.85403 * 236.93328 * 2 1 3 5 5 N 1.47015 * 107.26778 * 219.67339 * 4 2 1 6 6 C 1.34786 * 125.65161 * 178.84993 * 5 4 2 7 7 O 1.21548 * 119.99350 * 353.14670 * 6 5 4 8 8 C 1.47884 * 119.99982 * 173.15419 * 6 5 4 9 9 C 1.39912 * 120.02797 * 338.58300 * 8 6 5 10 10 C 1.38332 * 120.36056 * 180.28180 * 9 8 6 11 11 C 1.37746 * 120.41011 * 359.97438 * 10 9 8 12 12 C 1.40747 * 120.04054 * 0.02562 * 11 10 9 13 13 C 1.41437 * 120.17649 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00558 * 23.49264 * 13 12 11 15 15 C 1.39943 * 119.99746 * 203.49298 * 13 12 11 16 16 N 1.30822 * 120.00162 * 16.57768 * 15 13 12 17 17 Si 1.86806 * 119.99953 * 196.57403 * 15 13 12 18 18 H 1.48491 * 109.47145 * 60.00297 * 17 15 13 19 19 H 1.48502 * 109.46991 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47017 * 300.00030 * 17 15 13 21 21 C 1.38999 * 120.02076 * 158.85987 * 8 6 5 22 22 C 1.47422 * 108.70493 * 358.57904 * 5 4 2 23 23 C 1.54916 * 104.82784 * 24.35991 * 22 5 4 24 24 H 1.09000 * 111.00228 * 204.87618 * 23 22 5 25 25 O 1.42895 * 111.00425 * 81.06391 * 23 22 5 26 26 H 1.09001 * 109.47265 * 296.76131 * 1 2 3 27 27 H 1.09001 * 109.47647 * 56.76699 * 1 2 3 28 28 H 1.09001 * 109.46993 * 176.75845 * 1 2 3 29 29 H 1.08997 * 109.99770 * 100.19090 * 4 2 1 30 30 H 1.09003 * 109.77600 * 339.02437 * 4 2 1 31 31 H 1.08003 * 119.81765 * 0.25174 * 9 8 6 32 32 H 1.08000 * 119.79345 * 180.02562 * 10 9 8 33 33 H 1.08003 * 119.98207 * 180.02562 * 11 10 9 34 34 H 0.97001 * 120.00681 * 179.97438 * 16 15 13 35 35 H 1.07992 * 120.20213 * 359.69829 * 21 8 6 36 36 H 1.09002 * 110.36902 * 143.19605 * 22 5 4 37 37 H 1.08995 * 110.37257 * 265.51950 * 22 5 4 38 38 H 0.96706 * 113.99949 * 61.45976 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9166 1.0192 0.0000 4 6 2.0793 -0.7869 -1.2086 5 7 3.2445 -1.5506 -0.7390 6 6 3.9924 -2.3835 -1.4898 7 8 3.6510 -2.6496 -2.6255 8 6 5.2282 -2.9735 -0.9315 9 6 5.8675 -2.3632 0.1531 10 6 7.0270 -2.9060 0.6770 11 6 7.5655 -4.0533 0.1376 12 6 6.9365 -4.6813 -0.9537 13 6 7.4872 -5.8593 -1.5102 14 1 8.1323 -6.4878 -0.9141 15 6 7.1962 -6.2104 -2.8332 16 7 6.6987 -5.3197 -3.6521 17 14 7.5183 -7.9510 -3.4300 18 1 6.7203 -8.9072 -2.6214 19 1 7.1287 -8.0645 -4.8585 20 1 8.9625 -8.2648 -3.2849 21 6 5.7588 -4.1316 -1.4878 22 6 3.4633 -1.2497 0.6875 23 6 2.0789 -0.7954 1.2138 24 1 2.1849 -0.1523 2.0874 25 8 1.2481 -1.9204 1.5070 26 1 -0.3634 0.4627 0.9176 27 1 -0.3634 0.5632 -0.8596 28 1 -0.3633 -1.0260 -0.0581 29 1 2.3814 -0.0969 -1.9965 30 1 1.3156 -1.4687 -1.5828 31 1 5.4536 -1.4632 0.5834 32 1 7.5127 -2.4276 1.5147 33 1 8.4709 -4.4714 0.5524 34 1 6.4974 -5.5629 -4.5693 35 1 5.2685 -4.6062 -2.3248 36 1 3.7961 -2.1425 1.2169 37 1 4.1931 -0.4478 0.7985 38 1 1.6016 -2.5020 2.1940 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351858803.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:18 Heat of formation + Delta-G solvation = -80.548515 kcal Electronic energy + Delta-G solvation = -21245.862505 eV Core-core repulsion = 18052.062796 eV Total energy + Delta-G solvation = -3193.799709 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.42705 -39.50931 -38.62382 -36.21825 -35.63060 -33.86684 -31.86945 -31.29055 -29.90215 -27.84818 -26.95249 -24.76033 -23.19982 -22.66361 -21.10763 -20.68120 -19.41564 -18.41343 -17.58009 -17.33269 -16.95394 -16.42698 -16.34286 -15.53922 -15.32967 -14.93890 -14.84931 -14.48268 -14.36845 -14.09546 -13.67328 -13.50727 -13.38897 -13.10465 -12.91116 -12.80159 -12.55193 -12.35485 -12.20060 -11.96958 -11.89858 -11.60900 -11.31598 -11.09803 -11.07852 -10.66882 -9.74940 -9.45359 -9.35818 -8.65698 -6.40346 0.39309 0.99987 1.34366 1.46783 1.49356 1.95554 2.05378 2.17457 2.74621 3.20847 3.44753 3.59547 3.67066 3.92463 3.96301 4.22910 4.39455 4.50380 4.57485 4.60347 4.66932 4.69285 4.80533 4.84595 4.90408 5.06241 5.09989 5.15187 5.19148 5.28464 5.40776 5.49796 5.51887 5.84602 5.94381 6.04856 6.27646 6.42025 6.61438 6.85978 6.90400 6.94070 7.19554 8.28977 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.027139 B = 0.004696 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.489849 B = 5961.489812 C = 6494.835246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 H 0.125 0.875 4 C 0.106 3.894 5 N -0.611 5.611 6 C 0.567 3.433 7 O -0.596 6.596 8 C -0.134 4.134 9 C -0.208 4.208 10 C -0.094 4.094 11 C -0.217 4.217 12 C 0.067 3.933 13 C -0.498 4.498 14 H 0.086 0.914 15 C 0.027 3.973 16 N -0.828 5.828 17 Si 0.985 3.015 18 H -0.259 1.259 19 H -0.274 1.274 20 H -0.251 1.251 21 C -0.138 4.138 22 C 0.059 3.941 23 C 0.099 3.901 24 H 0.123 0.877 25 O -0.573 6.573 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.042 0.958 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.110 0.890 34 H 0.285 0.715 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.840 10.318 12.070 17.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.106 4.106 3 H 0.143 0.857 4 C -0.017 4.017 5 N -0.343 5.343 6 C 0.359 3.641 7 O -0.478 6.478 8 C -0.137 4.137 9 C -0.227 4.227 10 C -0.112 4.112 11 C -0.236 4.236 12 C 0.065 3.935 13 C -0.527 4.527 14 H 0.104 0.896 15 C -0.188 4.188 16 N -0.453 5.453 17 Si 0.805 3.195 18 H -0.183 1.183 19 H -0.199 1.199 20 H -0.174 1.174 21 C -0.159 4.159 22 C -0.062 4.062 23 C 0.039 3.961 24 H 0.141 0.859 25 O -0.382 6.382 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.166 0.834 32 H 0.160 0.840 33 H 0.128 0.872 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -8.425 10.450 10.729 17.184 hybrid contribution 0.611 -1.320 -0.744 1.634 sum -7.814 9.130 9.986 15.624 Atomic orbital electron populations 1.21515 0.92497 1.01760 1.02787 1.22415 0.97845 0.99228 0.91128 0.85721 1.22161 0.87091 0.94012 0.98420 1.48253 1.29769 1.43956 1.12344 1.18669 0.83530 0.77580 0.84298 1.90672 1.73238 1.62528 1.21395 1.19692 0.95896 0.98420 0.99698 1.21404 0.99484 1.03257 0.98589 1.20959 0.95461 0.95331 0.99479 1.21425 1.01426 0.98970 1.01818 1.17926 0.90403 0.92973 0.92180 1.19885 1.27866 1.07444 0.97494 0.89573 1.26918 0.92285 1.03022 0.96551 1.69913 1.32617 1.36533 1.06282 0.85214 0.80250 0.76590 0.77463 1.18307 1.19851 1.17433 1.21473 0.96664 0.97005 1.00739 1.23745 0.99775 1.02475 0.80233 1.23189 0.86925 0.88122 0.97846 0.85915 1.86473 1.49157 1.39627 1.62898 0.90332 0.91932 0.93834 0.92125 0.93824 0.83367 0.84010 0.87221 0.90406 0.88593 0.89548 0.87886 0.75567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.76 71.98 0.63 -1.55 16 2 C -0.09 -1.60 3.46 -9.61 -0.03 -1.63 16 3 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 4 C 0.11 3.11 6.48 86.73 0.56 3.68 16 5 N -0.61 -21.37 3.33 -815.14 -2.71 -24.08 16 6 C 0.57 27.19 7.67 86.80 0.67 27.85 16 7 O -0.60 -34.13 16.87 -3.87 -0.07 -34.20 16 8 C -0.13 -6.61 5.71 -20.13 -0.12 -6.72 16 9 C -0.21 -8.22 8.12 22.70 0.18 -8.04 16 10 C -0.09 -3.69 10.01 22.18 0.22 -3.46 16 11 C -0.22 -10.12 9.78 22.77 0.22 -9.90 16 12 C 0.07 3.73 5.59 -21.32 -0.12 3.61 16 13 C -0.50 -27.53 9.06 23.47 0.21 -27.32 16 14 H 0.09 4.44 7.90 -2.91 -0.02 4.42 16 15 C 0.03 1.43 5.18 85.26 0.44 1.88 16 16 N -0.83 -47.95 10.81 21.83 0.24 -47.71 16 17 Si 0.98 40.39 29.59 68.60 2.03 42.42 16 18 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 21 C -0.14 -7.95 8.24 23.01 0.19 -7.76 16 22 C 0.06 1.38 4.68 86.86 0.41 1.79 16 23 C 0.10 1.66 4.17 31.99 0.13 1.79 16 24 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 25 O -0.57 -11.58 12.22 -148.98 -1.82 -13.40 16 26 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.04 0.96 7.45 -2.39 -0.02 0.94 16 29 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.04 1.48 7.77 -2.39 -0.02 1.47 16 31 H 0.15 4.47 4.29 -2.91 -0.01 4.46 16 32 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 33 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 34 H 0.29 15.34 8.30 -92.71 -0.77 14.57 16 35 H 0.10 6.20 5.76 -2.91 -0.02 6.18 16 36 H 0.09 2.14 6.75 -2.39 -0.02 2.12 16 37 H 0.10 1.92 6.84 -2.39 -0.02 1.90 16 38 H 0.39 5.23 9.11 -74.05 -0.67 4.55 16 Total: -1.00 -77.32 312.02 1.68 -75.63 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.41 Total: 27.11 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: 3.60 Total: -25.78 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: -2.47 Total: -71.79 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -1.89 Total: -47.59 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Total: -77.32 1.68 -75.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351858803.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.914 kcal (2) G-P(sol) polarization free energy of solvation -77.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds