Wall clock time and date at job start Mon Mar 30 2020 02:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.60321 * 2 1 4 4 C 1.53181 * 109.60325 * 239.68433 * 2 1 3 5 5 N 1.46466 * 109.90065 * 177.60735 * 4 2 1 6 6 C 1.46910 * 110.99834 * 196.99719 * 5 4 2 7 7 C 1.53001 * 109.46736 * 169.99886 * 6 5 4 8 8 C 1.53002 * 109.46852 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47207 * 179.97438 * 8 7 6 10 10 H 1.07994 * 119.99603 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99838 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00380 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99848 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47297 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47261 * 239.99776 * 13 11 9 16 16 H 1.48500 * 109.47454 * 119.99769 * 13 11 9 17 17 C 1.46467 * 112.46895 * 71.96226 * 5 4 2 18 18 C 1.53185 * 109.89666 * 288.03932 * 17 5 4 19 19 H 1.08998 * 109.73723 * 182.47049 * 18 17 5 20 20 C 1.53004 * 109.60027 * 302.87462 * 18 17 5 21 21 S 1.81812 * 109.60461 * 120.49044 * 2 1 3 22 22 O 1.42093 * 108.70384 * 286.33358 * 21 2 1 23 23 O 1.42104 * 108.70333 * 57.81881 * 21 2 1 24 24 H 1.09004 * 109.47367 * 180.31882 * 1 2 3 25 25 H 1.09000 * 109.47131 * 300.31568 * 1 2 3 26 26 H 1.08998 * 109.47390 * 60.32028 * 1 2 3 27 27 H 1.08998 * 109.40386 * 57.47198 * 4 2 1 28 28 H 1.09002 * 109.39931 * 297.73762 * 4 2 1 29 29 H 1.08999 * 109.47206 * 50.00041 * 6 5 4 30 30 H 1.08998 * 109.47077 * 289.99636 * 6 5 4 31 31 H 1.08993 * 109.47525 * 59.99948 * 7 6 5 32 32 H 1.09006 * 109.47247 * 299.99399 * 7 6 5 33 33 H 1.09005 * 109.47493 * 59.99815 * 8 7 6 34 34 H 1.08998 * 109.47006 * 299.99778 * 8 7 6 35 35 H 0.97001 * 119.99667 * 0.02562 * 12 11 9 36 36 H 1.09004 * 109.39922 * 48.16668 * 17 5 4 37 37 H 1.08995 * 109.40633 * 167.90691 * 17 5 4 38 38 H 1.09001 * 109.46762 * 179.19438 * 20 18 17 39 39 H 1.09000 * 109.46771 * 299.18992 * 20 18 17 40 40 H 1.09000 * 109.47178 * 59.18989 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8956 1.0268 0.0000 4 6 2.0439 -0.7284 -1.2457 5 7 3.5074 -0.6828 -1.2816 6 6 4.0112 -1.0015 -2.6243 7 6 5.5105 -0.7037 -2.6904 8 6 6.0351 -1.0350 -4.0889 9 6 7.5117 -0.7411 -4.1543 10 1 8.0246 -0.3560 -3.2853 11 6 8.2077 -0.9627 -5.3237 12 7 7.5830 -1.4311 -6.3820 13 14 10.0381 -0.5990 -5.4044 14 1 10.4992 -0.0848 -4.0897 15 1 10.2943 0.4218 -6.4521 16 1 10.7761 -1.8443 -5.7358 17 6 4.1194 -1.5496 -0.2720 18 6 3.9217 -0.9463 1.1221 19 1 4.4157 -1.5705 1.8667 20 6 4.5142 0.4639 1.1598 21 16 2.1400 -0.8690 1.4759 22 8 1.9363 -0.0383 2.6105 23 8 1.6176 -2.1905 1.4750 24 1 -0.3634 -1.0277 0.0057 25 1 -0.3633 0.5187 0.8871 26 1 -0.3634 0.5088 -0.8928 27 1 1.6446 -0.2459 -2.1378 28 1 1.7146 -1.7671 -1.2194 29 1 3.4873 -0.3944 -3.3626 30 1 3.8409 -2.0573 -2.8352 31 1 6.0344 -1.3107 -1.9522 32 1 5.6809 0.3522 -2.4796 33 1 5.5111 -0.4276 -4.8270 34 1 5.8647 -2.0906 -4.3002 35 1 6.6326 -1.6203 -6.3399 36 1 3.6534 -2.5343 -0.3098 37 1 5.1856 -1.6470 -0.4765 38 1 4.3597 0.8965 2.1483 39 1 5.5822 0.4150 0.9475 40 1 4.0228 1.0846 0.4106 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352621177.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:10 Heat of formation + Delta-G solvation = -84.521360 kcal Electronic energy + Delta-G solvation = -20291.493340 eV Core-core repulsion = 17232.965307 eV Total energy + Delta-G solvation = -3058.528033 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.03270 -37.17200 -36.20145 -34.80915 -34.30223 -33.02706 -30.86614 -27.24704 -26.90958 -24.64871 -22.98101 -22.61484 -21.39430 -20.13931 -18.70119 -17.23868 -16.83379 -16.68961 -15.91554 -15.73330 -15.37207 -14.84202 -14.24153 -13.79523 -13.76095 -13.33553 -13.19944 -12.99964 -12.84162 -12.55466 -12.34197 -12.20376 -12.15911 -12.01254 -11.72939 -11.60385 -11.52706 -11.28006 -10.89307 -10.76386 -10.56552 -10.16956 -10.12019 -9.84595 -9.77277 -8.60268 -8.47121 -8.35415 -6.39648 -4.09000 -0.15431 2.45932 3.39820 3.41646 3.45297 3.47645 3.58541 3.90928 4.17341 4.36653 4.42730 4.51546 4.70162 4.75990 4.88743 5.07495 5.21697 5.27623 5.37568 5.43928 5.46293 5.49531 5.57289 5.65675 5.68184 5.72530 5.75675 6.03244 6.09538 6.39421 6.43401 6.80554 6.96197 6.98609 7.35310 7.47792 8.17992 8.43681 8.85409 9.63454 11.01162 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.035931 B = 0.003848 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.092139 B = 7275.628227 C = 7673.983604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.557 4.557 3 H 0.147 0.853 4 C 0.067 3.933 5 N -0.552 5.552 6 C 0.060 3.940 7 C -0.101 4.101 8 C 0.008 3.992 9 C -0.601 4.601 10 H 0.049 0.951 11 C 0.014 3.986 12 N -0.915 5.915 13 Si 1.073 2.927 14 H -0.289 1.289 15 H -0.287 1.287 16 H -0.287 1.287 17 C 0.060 3.940 18 C -0.552 4.552 19 H 0.138 0.862 20 C -0.131 4.131 21 S 2.406 3.594 22 O -0.943 6.943 23 O -0.942 6.942 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.036 0.964 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.007 0.993 34 H 0.005 0.995 35 H 0.269 0.731 36 H 0.054 0.946 37 H 0.110 0.890 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.404 2.584 13.926 18.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.667 4.667 3 H 0.165 0.835 4 C -0.062 4.062 5 N -0.276 5.276 6 C -0.066 4.066 7 C -0.139 4.139 8 C -0.030 4.030 9 C -0.639 4.639 10 H 0.068 0.932 11 C -0.189 4.189 12 N -0.551 5.551 13 Si 0.902 3.098 14 H -0.215 1.215 15 H -0.213 1.213 16 H -0.214 1.214 17 C -0.069 4.069 18 C -0.663 4.663 19 H 0.156 0.844 20 C -0.189 4.189 21 S 2.590 3.410 22 O -0.940 6.940 23 O -0.939 6.939 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.026 0.974 34 H 0.024 0.976 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.128 0.872 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.433 2.684 13.785 18.109 hybrid contribution -1.076 -0.490 0.208 1.201 sum -12.510 2.194 13.993 18.897 Atomic orbital electron populations 1.21586 0.89917 1.03905 1.04486 1.29991 1.05939 1.14153 1.16642 0.83542 1.21887 0.88239 0.99098 0.96948 1.61236 1.04875 1.54733 1.06803 1.22310 0.98452 0.99156 0.86691 1.21596 0.90857 1.01275 1.00123 1.19213 0.96804 0.95736 0.91226 1.22085 0.93939 1.47730 1.00154 0.93240 1.25849 1.06485 0.94227 0.92388 1.70731 1.12174 1.41554 1.30666 0.83484 0.74390 0.76649 0.75277 1.21529 1.21333 1.21360 1.21957 1.04114 0.93352 0.87459 1.29985 1.23478 1.06955 1.05922 0.84412 1.21542 1.03528 0.91017 1.02856 1.08622 0.78925 0.76070 0.77426 1.93557 1.84596 1.69330 1.46480 1.93564 1.77324 1.36124 1.86895 0.90867 0.90972 0.89860 0.88376 0.92756 0.90505 0.94586 0.93031 0.92132 0.97441 0.97649 0.92090 0.92761 0.87174 0.91404 0.90193 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.19 37.16 0.34 -0.78 16 2 C -0.56 -5.18 2.83 -26.64 -0.08 -5.25 16 3 H 0.15 1.18 7.40 -51.93 -0.38 0.80 16 4 C 0.07 0.70 4.70 -3.97 -0.02 0.68 16 5 N -0.55 -6.82 3.57 -235.12 -0.84 -7.66 16 6 C 0.06 0.90 4.96 -3.82 -0.02 0.88 16 7 C -0.10 -1.91 5.08 -26.73 -0.14 -2.04 16 8 C 0.01 0.19 4.28 -27.88 -0.12 0.07 16 9 C -0.60 -16.74 9.11 -34.44 -0.31 -17.05 16 10 H 0.05 1.36 7.74 -52.49 -0.41 0.96 16 11 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 12 N -0.91 -27.71 13.65 55.43 0.76 -26.96 16 13 Si 1.07 25.09 29.90 -169.99 -5.08 20.00 16 14 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 17 C 0.06 0.71 4.76 -3.96 -0.02 0.70 16 18 C -0.55 -5.72 3.42 -26.63 -0.09 -5.81 16 19 H 0.14 1.18 8.14 -51.93 -0.42 0.76 16 20 C -0.13 -1.32 8.80 37.16 0.33 -0.99 16 21 S 2.41 27.29 4.28 -107.50 -0.46 26.83 16 22 O -0.94 -12.94 17.68 -57.80 -1.02 -13.96 16 23 O -0.94 -13.28 18.06 -57.80 -1.04 -14.32 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.10 0.92 7.77 -51.93 -0.40 0.52 16 28 H 0.05 0.56 7.93 -51.93 -0.41 0.15 16 29 H 0.08 1.12 7.84 -51.93 -0.41 0.72 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.96 6.20 -51.93 -0.32 0.64 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 34 H 0.01 0.13 8.01 -51.93 -0.42 -0.28 16 35 H 0.27 8.07 7.22 -40.82 -0.29 7.78 16 36 H 0.05 0.63 7.93 -51.93 -0.41 0.21 16 37 H 0.11 1.40 5.79 -51.93 -0.30 1.10 16 38 H 0.07 0.62 7.93 -51.93 -0.41 0.20 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.80 6.47 -51.93 -0.34 0.47 16 LS Contribution 324.29 15.07 4.89 4.89 Total: -1.00 -33.72 324.29 -9.70 -43.42 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -6.68 Total: -2.94 kcal Atomic # 6 Polarization: -29.07 SS G_CDS: -0.22 Total: -29.30 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: -0.08 Total: -34.62 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -2.07 Total: -28.29 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.08 Total: 20.00 kcal Atomic # 16 Polarization: 27.29 SS G_CDS: -0.46 Total: 26.83 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.72 -9.70 -43.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352621177.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.097 kcal (2) G-P(sol) polarization free energy of solvation -33.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds