Wall clock time and date at job start Mon Mar 30 2020 02:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.60321 * 2 1 4 4 C 1.53181 * 109.60325 * 239.68433 * 2 1 3 5 5 N 1.46466 * 109.90065 * 177.60735 * 4 2 1 6 6 C 1.46910 * 110.99834 * 196.99719 * 5 4 2 7 7 C 1.53001 * 109.46736 * 169.99886 * 6 5 4 8 8 C 1.53002 * 109.46852 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47207 * 179.97438 * 8 7 6 10 10 H 1.07994 * 119.99603 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99838 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00380 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99848 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47297 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47261 * 239.99776 * 13 11 9 16 16 H 1.48500 * 109.47454 * 119.99769 * 13 11 9 17 17 C 1.46467 * 112.46895 * 71.96226 * 5 4 2 18 18 C 1.53185 * 109.89666 * 288.03932 * 17 5 4 19 19 H 1.08998 * 109.73723 * 182.47049 * 18 17 5 20 20 C 1.53004 * 109.60027 * 302.87462 * 18 17 5 21 21 S 1.81812 * 109.60461 * 120.49044 * 2 1 3 22 22 O 1.42093 * 108.70384 * 286.33358 * 21 2 1 23 23 O 1.42104 * 108.70333 * 57.81881 * 21 2 1 24 24 H 1.09004 * 109.47367 * 180.31882 * 1 2 3 25 25 H 1.09000 * 109.47131 * 300.31568 * 1 2 3 26 26 H 1.08998 * 109.47390 * 60.32028 * 1 2 3 27 27 H 1.08998 * 109.40386 * 57.47198 * 4 2 1 28 28 H 1.09002 * 109.39931 * 297.73762 * 4 2 1 29 29 H 1.08999 * 109.47206 * 50.00041 * 6 5 4 30 30 H 1.08998 * 109.47077 * 289.99636 * 6 5 4 31 31 H 1.08993 * 109.47525 * 59.99948 * 7 6 5 32 32 H 1.09006 * 109.47247 * 299.99399 * 7 6 5 33 33 H 1.09005 * 109.47493 * 59.99815 * 8 7 6 34 34 H 1.08998 * 109.47006 * 299.99778 * 8 7 6 35 35 H 0.97001 * 119.99667 * 0.02562 * 12 11 9 36 36 H 1.09004 * 109.39922 * 48.16668 * 17 5 4 37 37 H 1.08995 * 109.40633 * 167.90691 * 17 5 4 38 38 H 1.09001 * 109.46762 * 179.19438 * 20 18 17 39 39 H 1.09000 * 109.46771 * 299.18992 * 20 18 17 40 40 H 1.09000 * 109.47178 * 59.18989 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8956 1.0268 0.0000 4 6 2.0439 -0.7284 -1.2457 5 7 3.5074 -0.6828 -1.2816 6 6 4.0112 -1.0015 -2.6243 7 6 5.5105 -0.7037 -2.6904 8 6 6.0351 -1.0350 -4.0889 9 6 7.5117 -0.7411 -4.1543 10 1 8.0246 -0.3560 -3.2853 11 6 8.2077 -0.9627 -5.3237 12 7 7.5830 -1.4311 -6.3820 13 14 10.0381 -0.5990 -5.4044 14 1 10.4992 -0.0848 -4.0897 15 1 10.2943 0.4218 -6.4521 16 1 10.7761 -1.8443 -5.7358 17 6 4.1194 -1.5496 -0.2720 18 6 3.9217 -0.9463 1.1221 19 1 4.4157 -1.5705 1.8667 20 6 4.5142 0.4639 1.1598 21 16 2.1400 -0.8690 1.4759 22 8 1.9363 -0.0383 2.6105 23 8 1.6176 -2.1905 1.4750 24 1 -0.3634 -1.0277 0.0057 25 1 -0.3633 0.5187 0.8871 26 1 -0.3634 0.5088 -0.8928 27 1 1.6446 -0.2459 -2.1378 28 1 1.7146 -1.7671 -1.2194 29 1 3.4873 -0.3944 -3.3626 30 1 3.8409 -2.0573 -2.8352 31 1 6.0344 -1.3107 -1.9522 32 1 5.6809 0.3522 -2.4796 33 1 5.5111 -0.4276 -4.8270 34 1 5.8647 -2.0906 -4.3002 35 1 6.6326 -1.6203 -6.3399 36 1 3.6534 -2.5343 -0.3098 37 1 5.1856 -1.6470 -0.4765 38 1 4.3597 0.8965 2.1483 39 1 5.5822 0.4150 0.9475 40 1 4.0228 1.0846 0.4106 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352621177.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:10 Heat of formation + Delta-G solvation = -108.252357 kcal Electronic energy + Delta-G solvation = -20292.522393 eV Core-core repulsion = 17232.965307 eV Total energy + Delta-G solvation = -3059.557086 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.02711 -38.15396 -37.17894 -36.42363 -35.18673 -34.50120 -32.35728 -28.41517 -28.04793 -26.04907 -24.26456 -23.72383 -22.60182 -21.46949 -19.59296 -18.95125 -17.98694 -17.70248 -16.85258 -16.76207 -16.33338 -16.00540 -15.63716 -15.45787 -15.09155 -14.60601 -14.12000 -13.93350 -13.77306 -13.71952 -13.37012 -13.31358 -13.22895 -13.14576 -13.04447 -12.70090 -12.56117 -12.42272 -12.28065 -12.13833 -11.93745 -11.71002 -11.63486 -11.37696 -10.86377 -10.63964 -10.52372 -9.49935 -8.66790 -6.37117 -1.02833 1.53407 1.60751 1.62356 1.78516 2.47305 2.56179 2.58338 2.98803 3.17860 3.34108 3.51811 3.68000 3.83978 3.93845 4.07081 4.19217 4.28310 4.39324 4.49702 4.53399 4.60552 4.67315 4.73763 4.81140 4.86558 4.89184 4.89647 4.93105 5.08754 5.10913 5.31591 5.46420 5.55526 5.79962 5.93099 6.04764 6.22514 6.61737 7.44450 8.74508 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.035931 B = 0.003848 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.092139 B = 7275.628227 C = 7673.983604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.540 4.540 3 H 0.165 0.835 4 C 0.063 3.937 5 N -0.550 5.550 6 C 0.071 3.929 7 C -0.087 4.087 8 C 0.007 3.993 9 C -0.616 4.616 10 H 0.050 0.950 11 C -0.040 4.040 12 N -0.941 5.941 13 Si 1.120 2.880 14 H -0.269 1.269 15 H -0.279 1.279 16 H -0.280 1.280 17 C 0.055 3.945 18 C -0.545 4.545 19 H 0.154 0.846 20 C -0.135 4.135 21 S 2.406 3.594 22 O -0.970 6.970 23 O -0.974 6.974 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.104 0.896 27 H 0.115 0.885 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.034 0.966 31 H 0.053 0.947 32 H 0.058 0.942 33 H -0.009 1.009 34 H -0.013 1.013 35 H 0.256 0.744 36 H 0.057 0.943 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.464 3.531 14.593 19.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.652 4.652 3 H 0.182 0.818 4 C -0.066 4.066 5 N -0.274 5.274 6 C -0.056 4.056 7 C -0.125 4.125 8 C -0.030 4.030 9 C -0.654 4.654 10 H 0.068 0.932 11 C -0.237 4.237 12 N -0.579 5.579 13 Si 0.942 3.058 14 H -0.194 1.194 15 H -0.205 1.205 16 H -0.206 1.206 17 C -0.074 4.074 18 C -0.656 4.656 19 H 0.172 0.828 20 C -0.193 4.193 21 S 2.593 3.407 22 O -0.967 6.967 23 O -0.972 6.972 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.123 0.877 27 H 0.133 0.867 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.010 0.990 34 H 0.006 0.994 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.521 3.621 14.500 18.870 hybrid contribution -1.094 -0.779 -0.005 1.343 sum -12.615 2.842 14.494 19.424 Atomic orbital electron populations 1.21723 0.88647 1.04318 1.05929 1.29866 1.06972 1.14375 1.14018 0.81751 1.22020 0.86725 0.99721 0.98139 1.61154 1.06233 1.54700 1.05303 1.22029 0.95816 0.99205 0.88549 1.21359 0.93651 1.01011 0.96506 1.19168 0.95443 0.94206 0.94224 1.22549 0.95759 1.46958 1.00089 0.93175 1.27368 1.10684 0.93481 0.92169 1.70865 1.11668 1.43647 1.31730 0.82894 0.69495 0.77000 0.76435 1.19414 1.20505 1.20602 1.22001 1.03569 0.93706 0.88110 1.29927 1.22756 1.07609 1.05343 0.82788 1.21604 1.03393 0.90725 1.03578 1.08464 0.79089 0.75305 0.77818 1.93521 1.85117 1.69554 1.48473 1.93521 1.78123 1.37902 1.87614 0.91065 0.90264 0.87746 0.86723 0.92576 0.89831 0.94769 0.92792 0.92357 0.99036 0.99423 0.93412 0.92520 0.88054 0.90485 0.90337 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.19 71.98 0.66 -1.31 16 2 C -0.54 -8.70 2.83 30.65 0.09 -8.62 16 3 H 0.16 2.12 7.40 -2.39 -0.02 2.10 16 4 C 0.06 1.14 4.70 86.45 0.41 1.55 16 5 N -0.55 -12.51 3.57 -897.78 -3.20 -15.72 16 6 C 0.07 2.04 4.96 86.30 0.43 2.47 16 7 C -0.09 -3.26 5.08 30.60 0.16 -3.10 16 8 C 0.01 0.36 4.28 29.85 0.13 0.48 16 9 C -0.62 -34.36 9.11 25.60 0.23 -34.13 16 10 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 11 C -0.04 -2.28 5.46 84.65 0.46 -1.82 16 12 N -0.94 -57.74 13.65 21.45 0.29 -57.44 16 13 Si 1.12 49.74 29.90 68.60 2.05 51.79 16 14 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 15 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 16 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 17 C 0.05 1.23 4.76 86.45 0.41 1.64 16 18 C -0.54 -10.42 3.42 30.66 0.10 -10.31 16 19 H 0.15 2.41 8.14 -2.39 -0.02 2.39 16 20 C -0.13 -2.45 8.80 71.98 0.63 -1.82 16 21 S 2.41 51.39 4.28 -56.49 -0.24 51.15 16 22 O -0.97 -25.55 17.68 -127.40 -2.25 -27.81 16 23 O -0.97 -26.80 18.06 -127.40 -2.30 -29.11 16 24 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.11 1.78 7.77 -2.39 -0.02 1.76 16 28 H 0.06 1.04 7.93 -2.39 -0.02 1.02 16 29 H 0.08 2.30 7.84 -2.39 -0.02 2.28 16 30 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 1.97 6.20 -2.39 -0.01 1.96 16 32 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 33 H -0.01 -0.45 8.01 -2.38 -0.02 -0.47 16 34 H -0.01 -0.66 8.01 -2.39 -0.02 -0.68 16 35 H 0.26 15.83 7.22 -92.71 -0.67 15.16 16 36 H 0.06 1.25 7.93 -2.38 -0.02 1.23 16 37 H 0.10 2.46 5.79 -2.39 -0.01 2.45 16 38 H 0.08 1.26 7.93 -2.39 -0.02 1.24 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.08 1.47 6.47 -2.39 -0.02 1.45 16 Total: -1.00 -72.08 324.29 -0.84 -72.93 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 1.10 Total: 9.16 kcal Atomic # 6 Polarization: -58.67 SS G_CDS: 3.71 Total: -54.96 kcal Atomic # 7 Polarization: -70.25 SS G_CDS: -2.91 Total: -73.16 kcal Atomic # 8 Polarization: -52.36 SS G_CDS: -4.55 Total: -56.91 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 2.05 Total: 51.79 kcal Atomic # 16 Polarization: 51.39 SS G_CDS: -0.24 Total: 51.15 kcal Total: -72.08 -0.84 -72.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352621177.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.323 kcal (2) G-P(sol) polarization free energy of solvation -72.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds