Wall clock time and date at job start Mon Mar 30 2020 02:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.60510 * 2 1 4 4 C 1.53192 * 109.60168 * 239.51575 * 2 1 3 5 5 N 1.46471 * 109.90006 * 177.60643 * 4 2 1 6 6 C 1.46897 * 110.99823 * 196.99712 * 5 4 2 7 7 C 1.53000 * 109.47254 * 299.99712 * 6 5 4 8 8 C 1.53000 * 109.47301 * 184.82354 * 7 6 5 9 9 C 1.50701 * 109.47332 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99651 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99882 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00210 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99640 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47345 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47034 * 119.99803 * 13 11 9 16 16 H 1.48501 * 109.46889 * 239.99315 * 13 11 9 17 17 C 1.46472 * 112.46079 * 71.96110 * 5 4 2 18 18 C 1.53179 * 109.90351 * 288.03772 * 17 5 4 19 19 H 1.09001 * 109.59630 * 302.88042 * 18 17 5 20 20 C 1.53001 * 109.60232 * 182.56089 * 18 17 5 21 21 S 1.81809 * 109.60440 * 120.32591 * 2 1 3 22 22 O 1.42100 * 108.70208 * 57.81777 * 21 2 1 23 23 O 1.42101 * 108.70367 * 286.32864 * 21 2 1 24 24 H 1.08997 * 109.46745 * 299.67862 * 1 2 3 25 25 H 1.09000 * 109.46944 * 59.67213 * 1 2 3 26 26 H 1.08994 * 109.47400 * 179.67559 * 1 2 3 27 27 H 1.09001 * 109.39588 * 57.47430 * 4 2 1 28 28 H 1.09005 * 109.39426 * 297.73770 * 4 2 1 29 29 H 1.09000 * 109.46682 * 59.99646 * 6 5 4 30 30 H 1.08998 * 109.46916 * 179.97438 * 6 5 4 31 31 H 1.08998 * 109.47297 * 304.82879 * 7 6 5 32 32 H 1.09003 * 109.47289 * 64.82407 * 7 6 5 33 33 H 1.08998 * 109.47374 * 300.00478 * 8 7 6 34 34 H 1.09003 * 109.46906 * 59.99818 * 8 7 6 35 35 H 0.96998 * 119.99928 * 179.97438 * 12 11 9 36 36 H 1.09002 * 109.39863 * 48.17227 * 17 5 4 37 37 H 1.08998 * 109.39541 * 167.98738 * 17 5 4 38 38 H 1.08990 * 109.47349 * 59.99785 * 20 18 17 39 39 H 1.08999 * 109.46802 * 180.02562 * 20 18 17 40 40 H 1.08999 * 109.46920 * 299.99564 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0439 -0.7321 -1.2437 5 7 3.5075 -0.6866 -1.2798 6 6 4.0112 -1.0093 -2.6214 7 6 3.5544 -2.4159 -3.0131 8 6 4.1774 -2.7989 -4.3570 9 6 3.7269 -4.1842 -4.7431 10 1 3.0623 -4.7361 -4.0949 11 6 4.1633 -4.7469 -5.9237 12 7 4.9722 -4.0746 -6.7132 13 14 3.6043 -6.4638 -6.4026 14 1 2.7032 -7.0020 -5.3521 15 1 2.8775 -6.4049 -7.6962 16 1 4.7883 -7.3495 -6.5400 17 6 4.1193 -1.5505 -0.2675 18 6 3.9217 -0.9432 1.1248 19 1 4.3438 0.0614 1.1487 20 6 4.6179 -1.8175 2.1697 21 16 2.1400 -0.8648 1.4783 22 8 1.6175 -2.1862 1.4813 23 8 1.9364 -0.0307 2.6107 24 1 -0.3633 0.5088 0.8928 25 1 -0.3633 0.5189 -0.8870 26 1 -0.3634 -1.0276 -0.0058 27 1 1.6446 -0.2521 -2.1371 28 1 1.7145 -1.7708 -1.2142 29 1 3.6212 -0.2876 -3.3391 30 1 5.1004 -0.9678 -2.6202 31 1 3.8714 -3.1266 -2.2499 32 1 2.4678 -2.4347 -3.0979 33 1 3.8603 -2.0882 -5.1202 34 1 5.2640 -2.7801 -4.2722 35 1 5.2794 -4.4707 -7.5436 36 1 3.6534 -2.5353 -0.3024 37 1 5.1858 -1.6473 -0.4709 38 1 5.6833 -1.8720 1.9463 39 1 4.4756 -1.3837 3.1595 40 1 4.1903 -2.8199 2.1479 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352621178.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:13 Heat of formation + Delta-G solvation = -84.357000 kcal Electronic energy + Delta-G solvation = -20319.502016 eV Core-core repulsion = 17260.981110 eV Total energy + Delta-G solvation = -3058.520906 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.98979 -37.02470 -36.13082 -34.65076 -34.42120 -32.84546 -30.78384 -27.20937 -27.08856 -24.95447 -23.04098 -22.10050 -21.52205 -20.02252 -18.75034 -17.05308 -16.86351 -16.35496 -16.07786 -15.68955 -15.04211 -14.44687 -14.18506 -13.96110 -13.89159 -13.36960 -13.10935 -13.01532 -12.59043 -12.50905 -12.30802 -12.17595 -12.09981 -11.89958 -11.88508 -11.51758 -11.47229 -11.19443 -10.90680 -10.80668 -10.63884 -10.50705 -10.02471 -9.77726 -9.58269 -9.23431 -8.40668 -8.24136 -6.05334 -4.08015 -0.10198 2.55981 3.27604 3.35532 3.39899 3.44488 3.56498 4.01633 4.23646 4.41695 4.46131 4.46447 4.81129 4.84975 4.87550 5.19411 5.24672 5.30651 5.33618 5.37503 5.49017 5.61302 5.65113 5.65372 5.75812 5.78546 5.80089 5.90305 6.10791 6.41011 6.55541 6.86102 6.99251 7.11318 7.59345 7.71635 7.93481 8.36418 8.99113 9.56843 11.05740 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.027500 B = 0.004136 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.934887 B = 6767.917389 C = 6877.072412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.556 4.556 3 H 0.143 0.857 4 C 0.066 3.934 5 N -0.557 5.557 6 C 0.059 3.941 7 C -0.150 4.150 8 C 0.025 3.975 9 C -0.521 4.521 10 H 0.054 0.946 11 C 0.057 3.943 12 N -0.895 5.895 13 Si 0.890 3.110 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.065 3.935 18 C -0.556 4.556 19 H 0.143 0.857 20 C -0.141 4.141 21 S 2.406 3.594 22 O -0.934 6.934 23 O -0.947 6.947 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.017 0.983 34 H 0.016 0.984 35 H 0.260 0.740 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.718 9.612 15.044 18.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.667 4.667 3 H 0.161 0.839 4 C -0.063 4.063 5 N -0.280 5.280 6 C -0.068 4.068 7 C -0.189 4.189 8 C -0.013 4.013 9 C -0.560 4.560 10 H 0.073 0.927 11 C -0.144 4.144 12 N -0.535 5.535 13 Si 0.718 3.282 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.064 4.064 18 C -0.667 4.667 19 H 0.161 0.839 20 C -0.199 4.199 21 S 2.589 3.411 22 O -0.931 6.931 23 O -0.944 6.944 24 H 0.089 0.911 25 H 0.102 0.898 26 H 0.094 0.906 27 H 0.118 0.882 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.118 0.882 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.965 9.760 15.734 18.935 hybrid contribution 0.046 -1.309 -1.295 1.842 sum -3.918 8.450 14.439 17.183 Atomic orbital electron populations 1.21591 0.89853 1.04174 1.04363 1.30003 1.06125 1.13722 1.16852 0.83895 1.21896 0.88190 0.99626 0.96634 1.61525 1.05573 1.54066 1.06817 1.22381 1.00491 0.97528 0.86364 1.22308 1.00559 0.94731 1.01273 1.19021 0.95874 0.96338 0.90064 1.21282 1.28777 1.00863 1.05058 0.92735 1.25016 0.95097 0.97763 0.96511 1.69964 1.33722 1.37459 1.12306 0.86559 0.78556 0.84590 0.78455 1.19723 1.20975 1.20979 1.21908 1.03062 0.94469 0.86982 1.30006 1.23579 1.09318 1.03801 0.83901 1.21586 1.02649 0.99335 0.96375 1.08663 0.78817 0.76246 0.77394 1.93576 1.77021 1.35843 1.86700 1.93556 1.84684 1.69336 1.46836 0.91103 0.89776 0.90624 0.88220 0.91914 0.90394 0.90334 0.93045 0.93013 0.96514 0.96540 0.93024 0.91920 0.88198 0.89769 0.91093 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.19 37.16 0.34 -0.95 16 2 C -0.56 -5.64 3.23 -26.63 -0.09 -5.72 16 3 H 0.14 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.07 0.78 3.76 -3.96 -0.01 0.77 16 5 N -0.56 -7.01 4.61 -235.11 -1.08 -8.09 16 6 C 0.06 0.88 5.24 -3.83 -0.02 0.86 16 7 C -0.15 -2.84 4.52 -26.73 -0.12 -2.96 16 8 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 9 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 10 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 13 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 17 C 0.06 0.77 3.97 -3.96 -0.02 0.76 16 18 C -0.56 -5.65 3.22 -26.64 -0.09 -5.74 16 19 H 0.14 1.19 8.14 -51.93 -0.42 0.77 16 20 C -0.14 -1.29 9.21 37.16 0.34 -0.95 16 21 S 2.41 28.73 4.13 -107.50 -0.44 28.28 16 22 O -0.93 -14.03 18.02 -57.80 -1.04 -15.07 16 23 O -0.95 -13.44 18.11 -57.80 -1.05 -14.49 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.10 1.12 7.92 -51.93 -0.41 0.71 16 28 H 0.06 0.82 7.19 -51.93 -0.37 0.45 16 29 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 30 H 0.08 1.17 7.94 -51.93 -0.41 0.75 16 31 H 0.05 0.97 6.72 -51.93 -0.35 0.63 16 32 H 0.05 0.97 7.07 -51.93 -0.37 0.61 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.06 0.82 7.02 -51.93 -0.36 0.46 16 37 H 0.10 1.13 7.84 -51.93 -0.41 0.72 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 328.14 15.07 4.95 4.95 Total: -1.00 -33.26 328.14 -10.04 -43.30 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -6.87 Total: -2.87 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: -0.21 Total: -26.74 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: -0.35 Total: -33.81 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -2.09 Total: -29.55 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 28.73 SS G_CDS: -0.44 Total: 28.28 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.26 -10.04 -43.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352621178.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.057 kcal (2) G-P(sol) polarization free energy of solvation -33.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds