Wall clock time and date at job start Mon Mar 30 2020 02:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.60510 * 2 1 4 4 C 1.53192 * 109.60168 * 239.51575 * 2 1 3 5 5 N 1.46471 * 109.90006 * 177.60643 * 4 2 1 6 6 C 1.46897 * 110.99823 * 196.99712 * 5 4 2 7 7 C 1.53000 * 109.47254 * 299.99712 * 6 5 4 8 8 C 1.53000 * 109.47301 * 184.82354 * 7 6 5 9 9 C 1.50701 * 109.47332 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99651 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99882 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00210 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99640 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47345 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47034 * 119.99803 * 13 11 9 16 16 H 1.48501 * 109.46889 * 239.99315 * 13 11 9 17 17 C 1.46472 * 112.46079 * 71.96110 * 5 4 2 18 18 C 1.53179 * 109.90351 * 288.03772 * 17 5 4 19 19 H 1.09001 * 109.59630 * 302.88042 * 18 17 5 20 20 C 1.53001 * 109.60232 * 182.56089 * 18 17 5 21 21 S 1.81809 * 109.60440 * 120.32591 * 2 1 3 22 22 O 1.42100 * 108.70208 * 57.81777 * 21 2 1 23 23 O 1.42101 * 108.70367 * 286.32864 * 21 2 1 24 24 H 1.08997 * 109.46745 * 299.67862 * 1 2 3 25 25 H 1.09000 * 109.46944 * 59.67213 * 1 2 3 26 26 H 1.08994 * 109.47400 * 179.67559 * 1 2 3 27 27 H 1.09001 * 109.39588 * 57.47430 * 4 2 1 28 28 H 1.09005 * 109.39426 * 297.73770 * 4 2 1 29 29 H 1.09000 * 109.46682 * 59.99646 * 6 5 4 30 30 H 1.08998 * 109.46916 * 179.97438 * 6 5 4 31 31 H 1.08998 * 109.47297 * 304.82879 * 7 6 5 32 32 H 1.09003 * 109.47289 * 64.82407 * 7 6 5 33 33 H 1.08998 * 109.47374 * 300.00478 * 8 7 6 34 34 H 1.09003 * 109.46906 * 59.99818 * 8 7 6 35 35 H 0.96998 * 119.99928 * 179.97438 * 12 11 9 36 36 H 1.09002 * 109.39863 * 48.17227 * 17 5 4 37 37 H 1.08998 * 109.39541 * 167.98738 * 17 5 4 38 38 H 1.08990 * 109.47349 * 59.99785 * 20 18 17 39 39 H 1.08999 * 109.46802 * 180.02562 * 20 18 17 40 40 H 1.08999 * 109.46920 * 299.99564 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0439 -0.7321 -1.2437 5 7 3.5075 -0.6866 -1.2798 6 6 4.0112 -1.0093 -2.6214 7 6 3.5544 -2.4159 -3.0131 8 6 4.1774 -2.7989 -4.3570 9 6 3.7269 -4.1842 -4.7431 10 1 3.0623 -4.7361 -4.0949 11 6 4.1633 -4.7469 -5.9237 12 7 4.9722 -4.0746 -6.7132 13 14 3.6043 -6.4638 -6.4026 14 1 2.7032 -7.0020 -5.3521 15 1 2.8775 -6.4049 -7.6962 16 1 4.7883 -7.3495 -6.5400 17 6 4.1193 -1.5505 -0.2675 18 6 3.9217 -0.9432 1.1248 19 1 4.3438 0.0614 1.1487 20 6 4.6179 -1.8175 2.1697 21 16 2.1400 -0.8648 1.4783 22 8 1.6175 -2.1862 1.4813 23 8 1.9364 -0.0307 2.6107 24 1 -0.3633 0.5088 0.8928 25 1 -0.3633 0.5189 -0.8870 26 1 -0.3634 -1.0276 -0.0058 27 1 1.6446 -0.2521 -2.1371 28 1 1.7145 -1.7708 -1.2142 29 1 3.6212 -0.2876 -3.3391 30 1 5.1004 -0.9678 -2.6202 31 1 3.8714 -3.1266 -2.2499 32 1 2.4678 -2.4347 -3.0979 33 1 3.8603 -2.0882 -5.1202 34 1 5.2640 -2.7801 -4.2722 35 1 5.2794 -4.4707 -7.5436 36 1 3.6534 -2.5353 -0.3024 37 1 5.1858 -1.6473 -0.4709 38 1 5.6833 -1.8720 1.9463 39 1 4.4756 -1.3837 3.1595 40 1 4.1903 -2.8199 2.1479 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352621178.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:12 Heat of formation + Delta-G solvation = -108.567828 kcal Electronic energy + Delta-G solvation = -20320.551876 eV Core-core repulsion = 17260.981110 eV Total energy + Delta-G solvation = -3059.570766 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.04646 -38.05610 -37.15261 -36.01339 -35.47502 -34.42784 -32.32745 -28.67459 -27.96895 -26.39020 -24.27323 -23.05106 -22.91971 -21.34631 -19.72065 -18.51770 -17.96556 -17.74734 -17.05361 -16.76128 -16.54286 -16.02203 -15.45707 -15.18663 -14.75336 -14.35943 -14.25411 -13.95640 -13.93637 -13.59176 -13.55290 -13.22400 -13.16802 -13.09439 -13.03105 -12.74504 -12.73728 -12.45708 -12.44047 -12.26854 -12.19851 -11.57140 -11.40691 -11.34972 -11.28444 -10.87334 -10.56073 -9.42619 -8.21065 -6.31716 -1.01378 1.37575 1.38946 1.51242 1.66978 2.39264 2.53407 2.58062 3.05027 3.12022 3.36848 3.58194 3.67203 3.95470 3.97614 4.04317 4.22355 4.32172 4.40412 4.48854 4.62674 4.62916 4.66441 4.76532 4.76818 4.83513 4.90988 4.93878 5.10154 5.10494 5.14192 5.24392 5.50820 5.70458 5.82790 5.85953 5.95065 6.25480 6.85509 7.37744 8.89914 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.027500 B = 0.004136 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.934887 B = 6767.917389 C = 6877.072412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.539 4.539 3 H 0.170 0.830 4 C 0.059 3.941 5 N -0.544 5.544 6 C 0.069 3.931 7 C -0.137 4.137 8 C 0.028 3.972 9 C -0.543 4.543 10 H 0.053 0.947 11 C 0.004 3.996 12 N -0.930 5.930 13 Si 0.958 3.042 14 H -0.266 1.266 15 H -0.277 1.277 16 H -0.278 1.278 17 C 0.058 3.942 18 C -0.540 4.540 19 H 0.170 0.830 20 C -0.150 4.150 21 S 2.398 3.602 22 O -0.974 6.974 23 O -0.973 6.973 24 H 0.081 0.919 25 H 0.103 0.897 26 H 0.066 0.934 27 H 0.111 0.889 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.051 0.949 33 H -0.003 1.003 34 H -0.004 1.004 35 H 0.264 0.736 36 H 0.047 0.953 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.795 10.312 15.462 18.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.651 4.651 3 H 0.188 0.812 4 C -0.070 4.070 5 N -0.266 5.266 6 C -0.058 4.058 7 C -0.176 4.176 8 C -0.010 4.010 9 C -0.582 4.582 10 H 0.071 0.929 11 C -0.194 4.194 12 N -0.570 5.570 13 Si 0.783 3.217 14 H -0.191 1.191 15 H -0.203 1.203 16 H -0.203 1.203 17 C -0.071 4.071 18 C -0.652 4.652 19 H 0.187 0.813 20 C -0.208 4.208 21 S 2.585 3.415 22 O -0.971 6.971 23 O -0.970 6.970 24 H 0.100 0.900 25 H 0.122 0.878 26 H 0.085 0.915 27 H 0.129 0.871 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.015 0.985 34 H 0.014 0.986 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.128 0.872 38 H 0.121 0.879 39 H 0.100 0.900 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.065 10.454 16.196 19.701 hybrid contribution 0.089 -1.512 -1.447 2.095 sum -3.976 8.942 14.749 17.700 Atomic orbital electron populations 1.21732 0.89069 1.04172 1.05902 1.29876 1.06840 1.14365 1.14063 0.81249 1.22004 0.87739 0.99273 0.98020 1.61578 1.05994 1.53545 1.05483 1.22198 1.00802 0.94893 0.87911 1.22126 1.00050 0.97410 0.97994 1.18923 0.94800 0.94735 0.92538 1.21727 1.28750 1.02365 1.05315 0.92897 1.25883 0.95133 1.01880 0.96548 1.70074 1.34817 1.39323 1.12818 0.85507 0.78304 0.79640 0.78266 1.19055 1.20272 1.20320 1.22012 1.03468 0.93875 0.87748 1.29882 1.21651 1.10913 1.02739 0.81269 1.21727 1.03646 0.98778 0.96693 1.08685 0.79652 0.75364 0.77755 1.93526 1.78289 1.37877 1.87448 1.93520 1.85441 1.69440 1.48590 0.90042 0.87802 0.91517 0.87102 0.93474 0.89647 0.89931 0.93322 0.93071 0.98497 0.98567 0.92757 0.93503 0.87194 0.87866 0.89992 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.19 71.98 0.66 -1.81 16 2 C -0.54 -9.79 3.23 30.66 0.10 -9.69 16 3 H 0.17 2.22 8.14 -2.39 -0.02 2.20 16 4 C 0.06 1.29 3.76 86.45 0.33 1.62 16 5 N -0.54 -12.57 4.61 -897.77 -4.13 -16.71 16 6 C 0.07 1.98 5.24 86.30 0.45 2.43 16 7 C -0.14 -5.15 4.52 30.59 0.14 -5.01 16 8 C 0.03 1.39 4.97 29.85 0.15 1.54 16 9 C -0.54 -30.47 9.11 25.60 0.23 -30.23 16 10 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 11 C 0.00 0.20 5.46 84.66 0.46 0.67 16 12 N -0.93 -55.48 13.29 21.45 0.28 -55.20 16 13 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 14 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 15 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 17 C 0.06 1.29 3.97 86.44 0.34 1.63 16 18 C -0.54 -9.88 3.22 30.65 0.10 -9.78 16 19 H 0.17 2.24 8.14 -2.39 -0.02 2.22 16 20 C -0.15 -2.50 9.21 71.98 0.66 -1.84 16 21 S 2.40 54.93 4.13 -56.49 -0.23 54.69 16 22 O -0.97 -29.61 18.02 -127.41 -2.30 -31.90 16 23 O -0.97 -26.61 18.11 -127.41 -2.31 -28.91 16 24 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.11 2.24 7.92 -2.39 -0.02 2.22 16 28 H 0.05 1.21 7.19 -2.38 -0.02 1.19 16 29 H 0.09 2.35 8.07 -2.39 -0.02 2.33 16 30 H 0.08 2.32 7.94 -2.39 -0.02 2.30 16 31 H 0.05 1.84 6.72 -2.39 -0.02 1.82 16 32 H 0.05 1.91 7.07 -2.39 -0.02 1.90 16 33 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 34 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 36 H 0.05 1.21 7.02 -2.39 -0.02 1.19 16 37 H 0.11 2.26 7.84 -2.39 -0.02 2.24 16 38 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -71.56 328.14 -2.04 -73.60 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 0.99 Total: 8.89 kcal Atomic # 6 Polarization: -54.10 SS G_CDS: 3.62 Total: -50.48 kcal Atomic # 7 Polarization: -68.05 SS G_CDS: -3.85 Total: -71.90 kcal Atomic # 8 Polarization: -56.21 SS G_CDS: -4.60 Total: -60.82 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: 54.93 SS G_CDS: -0.23 Total: 54.69 kcal Total: -71.56 -2.04 -73.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352621178.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.967 kcal (2) G-P(sol) polarization free energy of solvation -71.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds