Wall clock time and date at job start Mon Mar 30 2020 02:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.60433 * 2 1 4 4 C 1.53191 * 109.60204 * 120.32062 * 2 1 3 5 5 N 1.46468 * 109.89907 * 57.28203 * 4 2 1 6 6 C 1.46904 * 110.99864 * 197.00083 * 5 4 2 7 7 C 1.52994 * 109.47264 * 170.00043 * 6 5 4 8 8 C 1.53001 * 109.47367 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.46995 * 180.02562 * 8 7 6 10 10 H 1.07991 * 120.00449 * 359.72153 * 9 8 7 11 11 C 1.37885 * 119.99686 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99913 * 359.72095 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 179.72528 * 11 9 8 14 14 H 1.48493 * 109.47326 * 90.00142 * 13 11 9 15 15 H 1.48506 * 109.46545 * 209.99892 * 13 11 9 16 16 H 1.48498 * 109.47210 * 329.99603 * 13 11 9 17 17 C 1.46462 * 112.46356 * 71.96618 * 5 4 2 18 18 C 1.53187 * 109.89961 * 288.03411 * 17 5 4 19 19 H 1.09000 * 109.60259 * 302.87638 * 18 17 5 20 20 C 1.52996 * 109.60093 * 182.39350 * 18 17 5 21 21 S 1.81808 * 108.67766 * 62.63835 * 18 17 5 22 22 O 1.42102 * 108.70331 * 193.43002 * 21 18 17 23 23 O 1.42100 * 108.70532 * 61.93673 * 21 18 17 24 24 H 1.09003 * 109.46494 * 299.68114 * 1 2 3 25 25 H 1.08991 * 109.46706 * 59.67933 * 1 2 3 26 26 H 1.08997 * 109.46833 * 179.68430 * 1 2 3 27 27 H 1.09003 * 109.39312 * 297.15029 * 4 2 1 28 28 H 1.08996 * 109.39825 * 177.41751 * 4 2 1 29 29 H 1.08998 * 109.47046 * 49.99719 * 6 5 4 30 30 H 1.09001 * 109.47014 * 289.99920 * 6 5 4 31 31 H 1.08998 * 109.47353 * 59.99865 * 7 6 5 32 32 H 1.09006 * 109.47395 * 300.00120 * 7 6 5 33 33 H 1.08998 * 109.47065 * 59.99602 * 8 7 6 34 34 H 1.09001 * 109.46892 * 299.99866 * 8 7 6 35 35 H 0.97000 * 119.99651 * 180.02562 * 12 11 9 36 36 H 1.09005 * 109.40407 * 48.16426 * 17 5 4 37 37 H 1.09003 * 109.40523 * 167.90380 * 17 5 4 38 38 H 1.09005 * 109.47736 * 300.80812 * 20 18 17 39 39 H 1.09002 * 109.47254 * 60.81103 * 20 18 17 40 40 H 1.09002 * 109.46981 * 180.80894 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0440 -0.7285 1.2457 5 7 1.5100 -2.0919 1.2817 6 6 1.6412 -2.6734 2.6244 7 6 0.8577 -3.9858 2.6906 8 6 0.9939 -4.5912 4.0892 9 6 0.2226 -5.8842 4.1541 10 1 -0.3150 -6.2365 3.2863 11 6 0.1990 -6.6148 5.3233 12 7 0.8542 -6.1860 6.3800 13 14 -0.7633 -8.2137 5.4061 14 1 0.1169 -9.3423 5.0105 15 1 -1.2492 -8.4275 6.7930 16 1 -1.9227 -8.1422 4.4809 17 6 2.1212 -2.9592 0.2721 18 6 1.6190 -2.5707 -1.1220 19 1 0.5311 -2.6313 -1.1489 20 6 2.2151 -3.5183 -2.1648 21 16 2.1440 -0.8664 -1.4759 22 8 1.4296 -0.3958 -2.6105 23 8 3.5642 -0.8175 -1.4750 24 1 -0.3632 0.5089 0.8929 25 1 -0.3632 0.5188 -0.8870 26 1 -0.3633 -1.0276 -0.0057 27 1 1.7234 -0.1904 2.1378 28 1 3.1329 -0.7668 1.2193 29 1 1.2452 -1.9761 3.3626 30 1 2.6930 -2.8672 2.8352 31 1 1.2537 -4.6831 1.9524 32 1 -0.1941 -3.7922 2.4798 33 1 0.5976 -3.8937 4.8271 34 1 2.0456 -4.7848 4.3004 35 1 0.8378 -6.7002 7.2023 36 1 3.2052 -2.8506 0.3097 37 1 1.8552 -3.9963 0.4766 38 1 3.3030 -3.4597 -2.1295 39 1 1.8991 -4.5393 -1.9507 40 1 1.8679 -3.2312 -3.1573 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352621179.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:15 Heat of formation + Delta-G solvation = -80.707471 kcal Electronic energy + Delta-G solvation = -20266.229772 eV Core-core repulsion = 17207.867122 eV Total energy + Delta-G solvation = -3058.362650 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.95805 -37.13081 -36.16183 -34.57142 -34.29425 -32.84360 -30.88226 -27.21136 -27.12135 -24.97025 -22.76627 -22.64242 -21.16284 -20.03951 -18.64010 -17.11640 -16.77564 -16.34019 -16.00720 -15.55419 -15.22700 -14.80539 -14.36309 -14.22771 -13.57592 -13.35902 -13.12187 -12.93588 -12.52197 -12.42003 -12.23147 -12.16908 -12.08526 -11.96440 -11.77788 -11.53699 -11.40561 -11.29226 -10.88379 -10.69436 -10.61587 -10.51650 -10.06021 -9.67223 -9.42400 -9.13239 -8.41407 -8.38372 -6.04568 -4.06947 -0.11418 2.49961 3.28833 3.35477 3.38405 3.44816 3.53909 3.95419 4.22966 4.38464 4.42699 4.49991 4.76032 4.82999 4.90846 5.17885 5.29651 5.31650 5.35237 5.42191 5.54121 5.60650 5.62903 5.65851 5.79478 5.82217 5.82892 6.05061 6.15271 6.52282 6.56357 6.92569 7.07694 7.11432 7.61759 7.75150 7.95004 8.37588 9.00129 9.57532 11.06811 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.032684 B = 0.003889 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.482059 B = 7198.832705 C = 7513.825710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.556 4.556 3 H 0.136 0.864 4 C 0.066 3.934 5 N -0.553 5.553 6 C 0.061 3.939 7 C -0.108 4.108 8 C 0.022 3.978 9 C -0.520 4.520 10 H 0.055 0.945 11 C 0.057 3.943 12 N -0.896 5.896 13 Si 0.892 3.108 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.061 3.939 18 C -0.552 4.552 19 H 0.147 0.853 20 C -0.141 4.141 21 S 2.405 3.595 22 O -0.944 6.944 23 O -0.942 6.942 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.037 0.963 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.016 0.984 34 H 0.014 0.986 35 H 0.260 0.740 36 H 0.054 0.946 37 H 0.111 0.889 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.903 11.254 -13.847 17.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.666 4.666 3 H 0.154 0.846 4 C -0.063 4.063 5 N -0.277 5.277 6 C -0.065 4.065 7 C -0.146 4.146 8 C -0.016 4.016 9 C -0.558 4.558 10 H 0.073 0.927 11 C -0.144 4.144 12 N -0.535 5.535 13 Si 0.720 3.280 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.068 4.068 18 C -0.664 4.664 19 H 0.165 0.835 20 C -0.200 4.200 21 S 2.589 3.411 22 O -0.941 6.941 23 O -0.939 6.939 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.117 0.883 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.035 0.965 34 H 0.033 0.967 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.927 11.603 -14.507 18.676 hybrid contribution -0.104 -1.123 1.075 1.558 sum 1.823 10.479 -13.432 17.134 Atomic orbital electron populations 1.21525 0.89020 1.04696 1.03596 1.30006 1.08098 1.11826 1.16714 0.84624 1.21849 0.97580 0.89931 0.96968 1.61255 1.58366 1.01064 1.07025 1.22305 0.99525 0.98233 0.86467 1.21735 0.99113 0.92878 1.00857 1.19072 0.97127 0.95379 0.90028 1.21220 1.30943 1.06311 0.97361 0.92690 1.25022 0.95664 0.97963 0.95782 1.69960 1.42419 1.38923 1.02207 0.86601 0.80323 0.83851 0.77265 1.20685 1.21223 1.19862 1.22005 0.96917 1.00758 0.87077 1.29962 1.12137 1.20617 1.03637 0.83529 1.21593 1.01603 1.00334 0.96434 1.08640 0.75876 0.79205 0.77401 1.93557 1.74819 1.79170 1.46514 1.93562 1.27484 1.85992 1.86895 0.90524 0.91430 0.89890 0.88331 0.92796 0.90460 0.94513 0.93202 0.92333 0.96548 0.96723 0.92989 0.92769 0.87122 0.90858 0.89579 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 8.80 37.16 0.33 -0.86 16 2 C -0.56 -5.27 3.41 -26.63 -0.09 -5.36 16 3 H 0.14 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.07 0.69 4.88 -3.96 -0.02 0.67 16 5 N -0.55 -6.83 3.59 -235.12 -0.84 -7.68 16 6 C 0.06 0.91 4.96 -3.82 -0.02 0.90 16 7 C -0.11 -2.02 5.08 -26.73 -0.14 -2.16 16 8 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 9 C -0.52 -14.26 9.11 -34.44 -0.31 -14.57 16 10 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 11 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 12 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 13 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 C 0.06 0.72 4.57 -3.97 -0.02 0.70 16 18 C -0.55 -5.66 2.84 -26.64 -0.08 -5.74 16 19 H 0.15 1.33 7.38 -51.93 -0.38 0.94 16 20 C -0.14 -1.30 9.19 37.16 0.34 -0.96 16 21 S 2.41 27.44 4.28 -107.50 -0.46 26.98 16 22 O -0.94 -13.03 17.71 -57.79 -1.02 -14.05 16 23 O -0.94 -13.35 18.06 -57.79 -1.04 -14.40 16 24 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.57 7.96 -51.93 -0.41 0.16 16 26 H 0.08 0.78 6.48 -51.93 -0.34 0.44 16 27 H 0.10 0.95 7.77 -51.93 -0.40 0.54 16 28 H 0.05 0.56 7.93 -51.93 -0.41 0.15 16 29 H 0.08 1.14 7.84 -51.93 -0.41 0.73 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.91 6.20 -51.93 -0.32 0.58 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.05 0.63 7.93 -51.93 -0.41 0.21 16 37 H 0.11 1.38 5.79 -51.93 -0.30 1.07 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 325.68 15.07 4.91 4.91 Total: -1.00 -32.90 325.68 -9.72 -42.62 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -6.74 Total: -3.45 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: -0.24 Total: -25.49 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: -0.11 Total: -33.33 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -2.07 Total: -28.45 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 27.44 SS G_CDS: -0.46 Total: 26.98 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.90 -9.72 -42.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352621179.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.086 kcal (2) G-P(sol) polarization free energy of solvation -32.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds