Wall clock time and date at job start Mon Mar 30 2020 02:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.60433 * 2 1 4 4 C 1.53191 * 109.60204 * 120.32062 * 2 1 3 5 5 N 1.46468 * 109.89907 * 57.28203 * 4 2 1 6 6 C 1.46904 * 110.99864 * 197.00083 * 5 4 2 7 7 C 1.52994 * 109.47264 * 170.00043 * 6 5 4 8 8 C 1.53001 * 109.47367 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.46995 * 180.02562 * 8 7 6 10 10 H 1.07991 * 120.00449 * 359.72153 * 9 8 7 11 11 C 1.37885 * 119.99686 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99913 * 359.72095 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 179.72528 * 11 9 8 14 14 H 1.48493 * 109.47326 * 90.00142 * 13 11 9 15 15 H 1.48506 * 109.46545 * 209.99892 * 13 11 9 16 16 H 1.48498 * 109.47210 * 329.99603 * 13 11 9 17 17 C 1.46462 * 112.46356 * 71.96618 * 5 4 2 18 18 C 1.53187 * 109.89961 * 288.03411 * 17 5 4 19 19 H 1.09000 * 109.60259 * 302.87638 * 18 17 5 20 20 C 1.52996 * 109.60093 * 182.39350 * 18 17 5 21 21 S 1.81808 * 108.67766 * 62.63835 * 18 17 5 22 22 O 1.42102 * 108.70331 * 193.43002 * 21 18 17 23 23 O 1.42100 * 108.70532 * 61.93673 * 21 18 17 24 24 H 1.09003 * 109.46494 * 299.68114 * 1 2 3 25 25 H 1.08991 * 109.46706 * 59.67933 * 1 2 3 26 26 H 1.08997 * 109.46833 * 179.68430 * 1 2 3 27 27 H 1.09003 * 109.39312 * 297.15029 * 4 2 1 28 28 H 1.08996 * 109.39825 * 177.41751 * 4 2 1 29 29 H 1.08998 * 109.47046 * 49.99719 * 6 5 4 30 30 H 1.09001 * 109.47014 * 289.99920 * 6 5 4 31 31 H 1.08998 * 109.47353 * 59.99865 * 7 6 5 32 32 H 1.09006 * 109.47395 * 300.00120 * 7 6 5 33 33 H 1.08998 * 109.47065 * 59.99602 * 8 7 6 34 34 H 1.09001 * 109.46892 * 299.99866 * 8 7 6 35 35 H 0.97000 * 119.99651 * 180.02562 * 12 11 9 36 36 H 1.09005 * 109.40407 * 48.16426 * 17 5 4 37 37 H 1.09003 * 109.40523 * 167.90380 * 17 5 4 38 38 H 1.09005 * 109.47736 * 300.80812 * 20 18 17 39 39 H 1.09002 * 109.47254 * 60.81103 * 20 18 17 40 40 H 1.09002 * 109.46981 * 180.80894 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0440 -0.7285 1.2457 5 7 1.5100 -2.0919 1.2817 6 6 1.6412 -2.6734 2.6244 7 6 0.8577 -3.9858 2.6906 8 6 0.9939 -4.5912 4.0892 9 6 0.2226 -5.8842 4.1541 10 1 -0.3150 -6.2365 3.2863 11 6 0.1990 -6.6148 5.3233 12 7 0.8542 -6.1860 6.3800 13 14 -0.7633 -8.2137 5.4061 14 1 0.1169 -9.3423 5.0105 15 1 -1.2492 -8.4275 6.7930 16 1 -1.9227 -8.1422 4.4809 17 6 2.1212 -2.9592 0.2721 18 6 1.6190 -2.5707 -1.1220 19 1 0.5311 -2.6313 -1.1489 20 6 2.2151 -3.5183 -2.1648 21 16 2.1440 -0.8664 -1.4759 22 8 1.4296 -0.3958 -2.6105 23 8 3.5642 -0.8175 -1.4750 24 1 -0.3632 0.5089 0.8929 25 1 -0.3632 0.5188 -0.8870 26 1 -0.3633 -1.0276 -0.0057 27 1 1.7234 -0.1904 2.1378 28 1 3.1329 -0.7668 1.2193 29 1 1.2452 -1.9761 3.3626 30 1 2.6930 -2.8672 2.8352 31 1 1.2537 -4.6831 1.9524 32 1 -0.1941 -3.7922 2.4798 33 1 0.5976 -3.8937 4.8271 34 1 2.0456 -4.7848 4.3004 35 1 0.8378 -6.7002 7.2023 36 1 3.2052 -2.8506 0.3097 37 1 1.8552 -3.9963 0.4766 38 1 3.3030 -3.4597 -2.1295 39 1 1.8991 -4.5393 -1.9507 40 1 1.8679 -3.2312 -3.1573 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352621179.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:15 Heat of formation + Delta-G solvation = -103.700796 kcal Electronic energy + Delta-G solvation = -20267.226837 eV Core-core repulsion = 17207.867122 eV Total energy + Delta-G solvation = -3059.359716 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.94697 -38.11297 -37.14338 -36.11391 -35.13533 -34.42698 -32.38556 -28.63794 -28.04125 -26.27770 -24.11997 -23.61677 -22.23251 -21.51604 -19.54153 -18.50318 -17.93456 -17.65208 -16.99128 -16.56272 -16.47150 -16.20862 -15.63528 -15.52157 -14.58064 -14.32789 -14.24250 -13.93049 -13.70843 -13.59760 -13.44392 -13.22568 -13.21561 -13.07535 -12.94698 -12.74921 -12.58722 -12.42894 -12.29523 -12.25688 -12.07977 -11.56886 -11.35727 -11.33306 -11.06058 -10.81186 -10.51380 -9.42540 -8.18092 -6.28046 -0.99022 1.42006 1.42424 1.53476 1.64452 2.41689 2.56121 2.60140 3.03319 3.15971 3.38849 3.57000 3.71651 3.90614 3.98789 4.12941 4.27358 4.39044 4.44557 4.54398 4.60774 4.70303 4.72934 4.81608 4.86487 4.91165 4.94488 5.04947 5.10790 5.12514 5.30018 5.36900 5.55459 5.77919 5.88111 5.91963 6.01306 6.29407 6.89833 7.41314 8.93626 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.032684 B = 0.003889 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.482059 B = 7198.832705 C = 7513.825710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.540 4.540 3 H 0.161 0.839 4 C 0.060 3.940 5 N -0.550 5.550 6 C 0.071 3.929 7 C -0.094 4.094 8 C 0.024 3.976 9 C -0.539 4.539 10 H 0.060 0.940 11 C 0.000 4.000 12 N -0.934 5.934 13 Si 0.960 3.040 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.263 1.263 17 C 0.057 3.943 18 C -0.543 4.543 19 H 0.162 0.838 20 C -0.149 4.149 21 S 2.405 3.595 22 O -0.971 6.971 23 O -0.975 6.975 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.113 0.887 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.033 0.967 31 H 0.055 0.945 32 H 0.058 0.942 33 H -0.006 1.006 34 H -0.010 1.010 35 H 0.262 0.738 36 H 0.055 0.945 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.985 11.352 -14.566 18.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.652 4.652 3 H 0.179 0.821 4 C -0.069 4.069 5 N -0.274 5.274 6 C -0.056 4.056 7 C -0.132 4.132 8 C -0.014 4.014 9 C -0.577 4.577 10 H 0.078 0.922 11 C -0.197 4.197 12 N -0.574 5.574 13 Si 0.785 3.215 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.187 1.187 17 C -0.072 4.072 18 C -0.655 4.655 19 H 0.179 0.821 20 C -0.207 4.207 21 S 2.592 3.408 22 O -0.968 6.968 23 O -0.972 6.972 24 H 0.106 0.894 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.132 0.868 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.012 0.988 34 H 0.009 0.991 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.122 0.878 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.021 11.711 -15.273 19.273 hybrid contribution 0.184 -1.131 1.323 1.750 sum 1.206 10.579 -13.950 17.549 Atomic orbital electron populations 1.21611 0.88384 1.04826 1.04516 1.29896 1.08494 1.12614 1.14208 0.82137 1.21983 0.97890 0.88889 0.98102 1.61172 1.58822 1.01887 1.05537 1.22025 0.98621 0.96636 0.88292 1.21476 0.99806 0.94692 0.97191 1.18983 0.94964 0.94472 0.92970 1.21703 1.31018 1.07439 0.97569 0.92208 1.25931 0.96685 1.01650 0.95467 1.70089 1.43954 1.40543 1.02848 0.85514 0.79106 0.79429 0.77409 1.19935 1.20970 1.18738 1.22051 0.97100 1.00370 0.87658 1.29883 1.13035 1.19696 1.02847 0.82071 1.21712 1.01598 1.00777 0.96660 1.08499 0.74978 0.79619 0.77726 1.93520 1.74966 1.79837 1.48462 1.93519 1.29501 1.86591 1.87588 0.89395 0.90755 0.90223 0.86843 0.92493 0.89996 0.94821 0.92645 0.92359 0.98804 0.99115 0.92889 0.92705 0.87750 0.91035 0.88470 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.80 71.98 0.63 -1.46 16 2 C -0.54 -8.91 3.41 30.66 0.10 -8.80 16 3 H 0.16 1.91 8.14 -2.39 -0.02 1.89 16 4 C 0.06 1.13 4.88 86.45 0.42 1.55 16 5 N -0.55 -12.58 3.59 -897.78 -3.22 -15.80 16 6 C 0.07 2.06 4.96 86.30 0.43 2.49 16 7 C -0.09 -3.46 5.08 30.59 0.16 -3.30 16 8 C 0.02 1.18 4.97 29.85 0.15 1.33 16 9 C -0.54 -29.62 9.11 25.60 0.23 -29.38 16 10 H 0.06 3.15 7.74 -2.92 -0.02 3.12 16 11 C 0.00 0.02 5.46 84.66 0.46 0.48 16 12 N -0.93 -55.72 13.29 21.45 0.28 -55.43 16 13 Si 0.96 43.29 29.54 68.60 2.03 45.32 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 15 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 16 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 17 C 0.06 1.26 4.57 86.45 0.39 1.65 16 18 C -0.54 -10.26 2.84 30.66 0.09 -10.18 16 19 H 0.16 2.57 7.38 -2.39 -0.02 2.56 16 20 C -0.15 -2.55 9.19 71.98 0.66 -1.89 16 21 S 2.40 51.71 4.28 -56.49 -0.24 51.46 16 22 O -0.97 -25.77 17.71 -127.41 -2.26 -28.02 16 23 O -0.97 -26.95 18.06 -127.41 -2.30 -29.26 16 24 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.07 1.07 7.96 -2.39 -0.02 1.05 16 26 H 0.08 1.30 6.48 -2.39 -0.02 1.28 16 27 H 0.11 1.85 7.77 -2.39 -0.02 1.83 16 28 H 0.06 1.07 7.93 -2.39 -0.02 1.05 16 29 H 0.08 2.30 7.84 -2.39 -0.02 2.29 16 30 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 1.97 6.20 -2.39 -0.01 1.95 16 32 H 0.06 2.14 8.14 -2.38 -0.02 2.13 16 33 H -0.01 -0.35 8.14 -2.39 -0.02 -0.36 16 34 H -0.01 -0.52 8.14 -2.39 -0.02 -0.53 16 35 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 36 H 0.05 1.21 7.93 -2.38 -0.02 1.19 16 37 H 0.10 2.45 5.79 -2.39 -0.01 2.44 16 38 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -70.15 325.68 -0.98 -71.13 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 1.00 Total: 8.12 kcal Atomic # 6 Polarization: -51.26 SS G_CDS: 3.73 Total: -47.52 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: -2.94 Total: -71.23 kcal Atomic # 8 Polarization: -52.72 SS G_CDS: -4.56 Total: -57.28 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 51.71 SS G_CDS: -0.24 Total: 51.46 kcal Total: -70.15 -0.98 -71.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352621179.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.570 kcal (2) G-P(sol) polarization free energy of solvation -70.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds