Wall clock time and date at job start Mon Mar 30 2020 02:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47347 * 2 1 4 4 C 1.52995 * 109.47178 * 120.00524 * 2 1 3 5 5 C 1.53787 * 113.61377 * 282.88931 * 4 2 1 6 6 C 1.53957 * 87.02039 * 220.04809 * 5 4 2 7 7 C 1.53780 * 87.11294 * 25.36269 * 6 5 4 8 8 N 1.46497 * 109.47138 * 240.00630 * 2 1 3 9 9 C 1.46502 * 119.99839 * 300.00035 * 8 2 1 10 10 S 1.65604 * 120.00477 * 120.00199 * 8 2 1 11 11 O 1.42097 * 104.27951 * 153.92922 * 10 8 2 12 12 O 1.42103 * 104.27300 * 26.06769 * 10 8 2 13 13 C 1.81406 * 104.44572 * 269.99971 * 10 8 2 14 14 C 1.52998 * 109.46886 * 179.97438 * 13 10 8 15 15 C 1.50695 * 109.47170 * 179.97438 * 14 13 10 16 16 H 1.07994 * 120.00099 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00259 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99478 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00400 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46776 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46980 * 120.00217 * 19 17 15 22 22 H 1.48496 * 109.47218 * 240.00363 * 19 17 15 23 23 H 1.09007 * 109.46851 * 66.02301 * 1 2 3 24 24 H 1.08991 * 109.47394 * 186.02668 * 1 2 3 25 25 H 1.09004 * 109.46947 * 306.03087 * 1 2 3 26 26 H 1.09000 * 112.85010 * 54.08513 * 4 2 1 27 27 H 1.08996 * 113.61329 * 334.57052 * 5 4 2 28 28 H 1.09003 * 113.61223 * 105.47194 * 5 4 2 29 29 H 1.09005 * 113.53418 * 270.81153 * 6 5 4 30 30 H 1.08997 * 113.73814 * 139.94845 * 6 5 4 31 31 H 1.08999 * 113.61853 * 220.09003 * 7 6 5 32 32 H 1.09001 * 113.60973 * 89.18427 * 7 6 5 33 33 H 1.09004 * 109.47026 * 270.00277 * 9 8 2 34 34 H 1.08996 * 109.47351 * 30.00029 * 9 8 2 35 35 H 1.09003 * 109.47348 * 150.00118 * 9 8 2 36 36 H 1.09000 * 109.46821 * 299.99537 * 13 10 8 37 37 H 1.09002 * 109.47009 * 60.00064 * 13 10 8 38 38 H 1.09003 * 109.47615 * 300.00523 * 14 13 10 39 39 H 1.09008 * 109.47081 * 59.99705 * 14 13 10 40 40 H 0.97007 * 119.99413 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.9490 0.1253 2.5297 6 6 3.3215 -0.4558 2.9153 7 6 3.5682 -0.6655 1.4120 8 7 2.0183 -0.6905 -1.1962 9 6 1.6644 -2.0930 -1.4282 10 16 2.9704 0.1143 -2.2863 11 8 3.7315 -0.9104 -2.9106 12 8 3.6005 1.1303 -1.5181 13 6 1.7963 0.8415 -3.4625 14 6 2.5632 1.6214 -4.5323 15 6 1.5879 2.2250 -5.5098 16 1 0.5272 2.0684 -5.3806 17 6 2.0497 2.9781 -6.5684 18 7 3.3414 3.1692 -6.7253 19 14 0.8408 3.7269 -7.7797 20 1 -0.5443 3.3668 -7.3831 21 1 0.9879 5.2046 -7.7763 22 1 1.1176 3.2049 -9.1420 23 1 -0.3633 0.4176 -0.9391 24 1 -0.3634 -1.0219 0.1079 25 1 -0.3633 0.6045 0.8311 26 1 1.6256 -1.7236 1.3580 27 1 1.9658 1.1994 2.3451 28 1 1.1423 -0.1779 3.1972 29 1 3.2573 -1.3853 3.4812 30 1 3.9936 0.2715 3.3709 31 1 4.0668 -1.6062 1.1784 32 1 4.0285 0.1920 0.9213 33 1 2.4157 -2.7376 -0.9718 34 1 0.6904 -2.3001 -0.9849 35 1 1.6237 -2.2850 -2.5004 36 1 1.2176 0.0482 -3.9355 37 1 1.1233 1.5165 -2.9337 38 1 3.1418 2.4147 -4.0590 39 1 3.2366 0.9467 -5.0611 40 1 3.6663 3.6987 -7.4704 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356126411.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:31 Heat of formation + Delta-G solvation = -67.811454 kcal Electronic energy + Delta-G solvation = -20390.352639 eV Core-core repulsion = 17332.549202 eV Total energy + Delta-G solvation = -3057.803437 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.40071 -36.59560 -35.94023 -35.36362 -33.88105 -31.15023 -30.79503 -26.54740 -25.79384 -25.40761 -25.33395 -21.79943 -21.03488 -19.42397 -18.46944 -17.50902 -16.52278 -16.17750 -15.57424 -15.38333 -14.86378 -14.57904 -14.41309 -13.94440 -13.38741 -12.84942 -12.80854 -12.54440 -12.41456 -12.37648 -12.34219 -11.89777 -11.74410 -11.55794 -11.53589 -11.18792 -11.09155 -11.05660 -10.94983 -10.50862 -10.38655 -10.38246 -10.31312 -10.25027 -9.74451 -9.27843 -8.67718 -8.50555 -6.12382 -4.17847 0.79557 3.06088 3.25198 3.32405 3.35889 4.31622 4.39629 4.48306 4.55578 4.62201 4.69698 4.83406 4.97184 5.17895 5.22829 5.25622 5.32862 5.55765 5.58287 5.61142 5.63507 5.69372 5.76078 5.80237 5.81206 5.84594 5.89404 6.00331 6.11276 6.13057 6.34786 6.50143 6.53059 6.78198 7.30591 7.36587 7.80923 8.18068 8.85837 9.46942 10.98724 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.031315 B = 0.004485 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.925776 B = 6241.390566 C = 6396.025757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.152 3.848 3 H 0.101 0.899 4 C -0.114 4.114 5 C -0.133 4.133 6 C -0.143 4.143 7 C -0.140 4.140 8 N -1.003 6.003 9 C 0.098 3.902 10 S 2.588 3.412 11 O -0.965 6.965 12 O -0.963 6.963 13 C -0.591 4.591 14 C 0.028 3.972 15 C -0.519 4.519 16 H 0.062 0.938 17 C 0.057 3.943 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.033 0.967 39 H 0.032 0.968 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.677 -8.789 16.843 19.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.046 3.954 3 H 0.119 0.881 4 C -0.134 4.134 5 C -0.171 4.171 6 C -0.180 4.180 7 C -0.178 4.178 8 N -0.838 5.838 9 C -0.048 4.048 10 S 2.687 3.313 11 O -0.955 6.955 12 O -0.954 6.954 13 C -0.724 4.724 14 C -0.011 4.011 15 C -0.559 4.559 16 H 0.080 0.920 17 C -0.145 4.145 18 N -0.529 5.529 19 Si 0.727 3.273 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.585 -8.713 16.782 19.457 hybrid contribution -1.295 0.435 -0.951 1.664 sum -5.880 -8.278 15.832 18.808 Atomic orbital electron populations 1.22175 0.95240 1.02296 1.02539 1.20922 0.94026 0.96651 0.83789 0.88098 1.22840 0.96931 0.99619 0.93979 1.22935 0.97417 1.00038 0.96677 1.22830 0.97489 1.00878 0.96827 1.22986 0.95942 1.02841 0.96027 1.57719 1.70555 1.20575 1.34995 1.21324 1.00631 0.81186 1.01670 1.05754 0.76262 0.74313 0.74955 1.93534 1.67808 1.56739 1.77405 1.93519 1.73299 1.59922 1.68645 1.30510 1.15653 1.11651 1.14599 1.18963 0.95612 0.94918 0.91637 1.21044 0.92947 1.32233 1.09652 0.92018 1.25074 0.95372 0.96184 0.97876 1.69972 1.12614 1.39474 1.30802 0.86417 0.81075 0.78971 0.80850 1.19647 1.20780 1.20778 0.91880 0.92243 0.91578 0.89205 0.89774 0.91606 0.90599 0.91516 0.91833 0.88941 0.92922 0.91390 0.91213 0.86394 0.86369 0.94885 0.94939 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 8.97 37.16 0.33 -1.23 16 2 C 0.15 1.81 2.28 -67.94 -0.15 1.65 16 3 H 0.10 1.33 6.79 -51.93 -0.35 0.98 16 4 C -0.11 -1.19 2.83 -89.80 -0.25 -1.44 16 5 C -0.13 -1.21 7.57 -25.82 -0.20 -1.41 16 6 C -0.14 -1.36 8.09 -25.83 -0.21 -1.57 16 7 C -0.14 -1.67 7.51 -25.91 -0.19 -1.87 16 8 N -1.00 -13.69 2.87 -114.61 -0.33 -14.02 16 9 C 0.10 1.10 9.47 59.85 0.57 1.67 16 10 S 2.59 47.55 5.37 -107.50 -0.58 46.97 16 11 O -0.96 -20.42 17.09 -57.54 -0.98 -21.40 16 12 O -0.96 -19.78 16.27 -57.54 -0.94 -20.72 16 13 C -0.59 -11.53 6.12 37.16 0.23 -11.30 16 14 C 0.03 0.72 4.98 -27.89 -0.14 0.58 16 15 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 16 16 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 19 Si 0.90 21.26 29.54 -169.99 -5.02 16.23 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.50 6.92 -51.93 -0.36 0.14 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.09 0.84 8.01 -51.93 -0.42 0.43 16 27 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.32 7.80 -51.93 -0.40 0.91 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.58 6.55 -51.93 -0.34 0.24 16 35 H 0.07 0.79 7.79 -51.93 -0.40 0.39 16 36 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 37 H 0.12 2.08 8.14 -51.92 -0.42 1.65 16 38 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.03 0.89 8.14 -51.92 -0.42 0.46 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 335.66 15.07 5.06 5.06 Total: -1.00 -33.48 335.66 -9.37 -42.85 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.89 Total: -0.91 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: -0.43 Total: -28.17 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.41 Total: -39.91 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -1.92 Total: -42.12 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 47.55 SS G_CDS: -0.58 Total: 46.97 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.48 -9.37 -42.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356126411.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.964 kcal (2) G-P(sol) polarization free energy of solvation -33.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds