Wall clock time and date at job start Mon Mar 30 2020 02:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47347 * 2 1 4 4 C 1.52995 * 109.47178 * 120.00524 * 2 1 3 5 5 C 1.53787 * 113.61377 * 282.88931 * 4 2 1 6 6 C 1.53957 * 87.02039 * 220.04809 * 5 4 2 7 7 C 1.53780 * 87.11294 * 25.36269 * 6 5 4 8 8 N 1.46497 * 109.47138 * 240.00630 * 2 1 3 9 9 C 1.46502 * 119.99839 * 300.00035 * 8 2 1 10 10 S 1.65604 * 120.00477 * 120.00199 * 8 2 1 11 11 O 1.42097 * 104.27951 * 153.92922 * 10 8 2 12 12 O 1.42103 * 104.27300 * 26.06769 * 10 8 2 13 13 C 1.81406 * 104.44572 * 269.99971 * 10 8 2 14 14 C 1.52998 * 109.46886 * 179.97438 * 13 10 8 15 15 C 1.50695 * 109.47170 * 179.97438 * 14 13 10 16 16 H 1.07994 * 120.00099 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00259 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99478 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00400 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46776 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46980 * 120.00217 * 19 17 15 22 22 H 1.48496 * 109.47218 * 240.00363 * 19 17 15 23 23 H 1.09007 * 109.46851 * 66.02301 * 1 2 3 24 24 H 1.08991 * 109.47394 * 186.02668 * 1 2 3 25 25 H 1.09004 * 109.46947 * 306.03087 * 1 2 3 26 26 H 1.09000 * 112.85010 * 54.08513 * 4 2 1 27 27 H 1.08996 * 113.61329 * 334.57052 * 5 4 2 28 28 H 1.09003 * 113.61223 * 105.47194 * 5 4 2 29 29 H 1.09005 * 113.53418 * 270.81153 * 6 5 4 30 30 H 1.08997 * 113.73814 * 139.94845 * 6 5 4 31 31 H 1.08999 * 113.61853 * 220.09003 * 7 6 5 32 32 H 1.09001 * 113.60973 * 89.18427 * 7 6 5 33 33 H 1.09004 * 109.47026 * 270.00277 * 9 8 2 34 34 H 1.08996 * 109.47351 * 30.00029 * 9 8 2 35 35 H 1.09003 * 109.47348 * 150.00118 * 9 8 2 36 36 H 1.09000 * 109.46821 * 299.99537 * 13 10 8 37 37 H 1.09002 * 109.47009 * 60.00064 * 13 10 8 38 38 H 1.09003 * 109.47615 * 300.00523 * 14 13 10 39 39 H 1.09008 * 109.47081 * 59.99705 * 14 13 10 40 40 H 0.97007 * 119.99413 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.9490 0.1253 2.5297 6 6 3.3215 -0.4558 2.9153 7 6 3.5682 -0.6655 1.4120 8 7 2.0183 -0.6905 -1.1962 9 6 1.6644 -2.0930 -1.4282 10 16 2.9704 0.1143 -2.2863 11 8 3.7315 -0.9104 -2.9106 12 8 3.6005 1.1303 -1.5181 13 6 1.7963 0.8415 -3.4625 14 6 2.5632 1.6214 -4.5323 15 6 1.5879 2.2250 -5.5098 16 1 0.5272 2.0684 -5.3806 17 6 2.0497 2.9781 -6.5684 18 7 3.3414 3.1692 -6.7253 19 14 0.8408 3.7269 -7.7797 20 1 -0.5443 3.3668 -7.3831 21 1 0.9879 5.2046 -7.7763 22 1 1.1176 3.2049 -9.1420 23 1 -0.3633 0.4176 -0.9391 24 1 -0.3634 -1.0219 0.1079 25 1 -0.3633 0.6045 0.8311 26 1 1.6256 -1.7236 1.3580 27 1 1.9658 1.1994 2.3451 28 1 1.1423 -0.1779 3.1972 29 1 3.2573 -1.3853 3.4812 30 1 3.9936 0.2715 3.3709 31 1 4.0668 -1.6062 1.1784 32 1 4.0285 0.1920 0.9213 33 1 2.4157 -2.7376 -0.9718 34 1 0.6904 -2.3001 -0.9849 35 1 1.6237 -2.2850 -2.5004 36 1 1.2176 0.0482 -3.9355 37 1 1.1233 1.5165 -2.9337 38 1 3.1418 2.4147 -4.0590 39 1 3.2366 0.9467 -5.0611 40 1 3.6663 3.6987 -7.4704 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356126411.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:31 Heat of formation + Delta-G solvation = -90.211100 kcal Electronic energy + Delta-G solvation = -20391.323961 eV Core-core repulsion = 17332.549202 eV Total energy + Delta-G solvation = -3058.774759 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.26135 -38.19048 -37.06099 -36.82360 -35.91470 -33.14431 -31.69297 -27.65362 -27.44380 -26.41476 -26.17099 -23.60870 -22.14947 -20.27328 -19.82004 -19.07815 -18.30729 -17.40630 -17.14318 -16.55001 -16.32836 -15.98723 -15.53284 -15.09663 -14.95930 -14.46123 -13.82376 -13.75641 -13.58469 -13.46545 -13.35504 -13.27372 -13.14884 -12.96217 -12.83543 -12.79501 -12.66067 -12.32342 -12.27393 -12.11234 -11.95583 -11.72886 -11.36833 -11.18668 -11.15957 -11.00365 -10.67441 -9.80667 -8.27728 -6.42321 -0.70287 1.39998 1.40922 1.54349 1.76474 2.36997 2.86129 3.05555 3.17707 3.57403 3.78057 3.81847 3.95353 4.04280 4.08443 4.13836 4.33859 4.45031 4.49622 4.70204 4.75648 4.82560 4.89675 4.90421 4.94684 4.96394 5.05344 5.11388 5.13794 5.23795 5.24186 5.28297 5.39355 5.48873 5.66412 5.70564 5.77653 6.04065 6.71466 7.28180 8.84909 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.031315 B = 0.004485 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.925776 B = 6241.390566 C = 6396.025757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.143 3.857 3 H 0.081 0.919 4 C -0.108 4.108 5 C -0.125 4.125 6 C -0.136 4.136 7 C -0.158 4.158 8 N -0.990 5.990 9 C 0.087 3.913 10 S 2.607 3.393 11 O -0.997 6.997 12 O -0.991 6.991 13 C -0.589 4.589 14 C 0.021 3.979 15 C -0.539 4.539 16 H 0.076 0.924 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.976 3.024 20 H -0.255 1.255 21 H -0.277 1.277 22 H -0.277 1.277 23 H 0.057 0.943 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.111 0.889 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.004 0.996 39 H 0.004 0.996 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.682 -9.766 18.154 22.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.037 3.963 3 H 0.099 0.901 4 C -0.128 4.128 5 C -0.163 4.163 6 C -0.173 4.173 7 C -0.196 4.196 8 N -0.829 5.829 9 C -0.058 4.058 10 S 2.705 3.295 11 O -0.987 6.987 12 O -0.982 6.982 13 C -0.721 4.721 14 C -0.018 4.018 15 C -0.578 4.578 16 H 0.094 0.906 17 C -0.203 4.203 18 N -0.575 5.575 19 Si 0.799 3.201 20 H -0.178 1.178 21 H -0.203 1.203 22 H -0.203 1.203 23 H 0.076 0.924 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.129 0.871 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.086 0.914 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.023 0.977 39 H 0.022 0.978 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.599 -9.688 18.090 21.883 hybrid contribution -0.315 0.688 -1.274 1.482 sum -7.914 -9.000 16.816 20.650 Atomic orbital electron populations 1.22168 0.92709 1.03945 1.03027 1.21190 0.95962 0.95748 0.83353 0.90099 1.22891 0.95340 1.00813 0.93732 1.22911 0.97871 0.99468 0.96094 1.22841 0.97695 1.01766 0.95026 1.23015 0.97249 1.01219 0.98117 1.57340 1.70080 1.21335 1.34145 1.21637 1.02743 0.79268 1.02126 1.04877 0.76184 0.73648 0.74806 1.93483 1.69168 1.57520 1.78519 1.93479 1.74357 1.61262 1.69066 1.30412 1.15888 1.12111 1.13672 1.18815 0.95577 0.94328 0.93076 1.21540 0.93899 1.32214 1.10127 0.90601 1.26149 0.97305 0.96677 1.00140 1.70120 1.15009 1.40522 1.31823 0.85236 0.79026 0.77917 0.77900 1.17840 1.20278 1.20274 0.92416 0.90218 0.89910 0.87051 0.90472 0.89127 0.88736 0.91700 0.92288 0.92253 0.92504 0.87659 0.91439 0.84254 0.84321 0.97721 0.97809 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 8.97 71.98 0.65 -1.85 16 2 C 0.14 3.14 2.28 44.99 0.10 3.24 16 3 H 0.08 2.12 6.79 -2.38 -0.02 2.10 16 4 C -0.11 -2.00 2.83 -10.26 -0.03 -2.03 16 5 C -0.13 -1.96 7.57 31.18 0.24 -1.72 16 6 C -0.14 -2.34 8.09 31.18 0.25 -2.08 16 7 C -0.16 -3.71 7.51 31.12 0.23 -3.48 16 8 N -0.99 -25.83 2.87 -516.52 -1.48 -27.32 16 9 C 0.09 1.74 9.47 127.77 1.21 2.95 16 10 S 2.61 97.95 5.37 -56.49 -0.30 97.65 16 11 O -1.00 -43.47 17.09 -127.65 -2.18 -45.65 16 12 O -0.99 -42.59 16.27 -127.65 -2.08 -44.67 16 13 C -0.59 -23.11 6.12 71.98 0.44 -22.67 16 14 C 0.02 1.12 4.98 29.85 0.15 1.27 16 15 C -0.54 -30.33 9.11 25.60 0.23 -30.10 16 16 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 17 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 18 N -0.94 -57.60 13.29 21.45 0.28 -57.32 16 19 Si 0.98 43.52 29.54 68.60 2.03 45.55 16 20 H -0.25 -10.56 7.11 99.48 0.71 -9.86 16 21 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 23 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.08 0.94 6.92 -2.39 -0.02 0.92 16 25 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.11 1.63 8.01 -2.39 -0.02 1.61 16 27 H 0.08 1.32 8.04 -2.39 -0.02 1.30 16 28 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.78 7.80 -2.39 -0.02 1.76 16 33 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.11 1.35 6.55 -2.39 -0.02 1.34 16 35 H 0.07 1.41 7.79 -2.39 -0.02 1.39 16 36 H 0.14 4.79 8.14 -2.39 -0.02 4.77 16 37 H 0.14 4.79 8.14 -2.39 -0.02 4.77 16 38 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 40 H 0.27 15.33 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -75.09 335.66 1.19 -73.90 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.99 Total: 14.11 kcal Atomic # 6 Polarization: -60.19 SS G_CDS: 3.94 Total: -56.25 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -1.20 Total: -84.64 kcal Atomic # 8 Polarization: -86.06 SS G_CDS: -4.26 Total: -90.32 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 97.95 SS G_CDS: -0.30 Total: 97.65 kcal Total: -75.09 1.19 -73.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356126411.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.310 kcal (2) G-P(sol) polarization free energy of solvation -75.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds