Wall clock time and date at job start Mon Mar 30 2020 02:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47194 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00158 * 2 1 3 5 5 C 1.53775 * 113.61317 * 157.49696 * 4 2 1 6 6 C 1.53779 * 87.08045 * 220.02006 * 5 4 2 7 7 C 1.53779 * 87.08153 * 25.43482 * 6 5 4 8 8 N 1.46500 * 109.47007 * 120.00377 * 2 1 3 9 9 C 1.46505 * 120.00155 * 60.00027 * 8 2 1 10 10 S 1.65599 * 120.00129 * 239.99904 * 8 2 1 11 11 O 1.42099 * 104.27638 * 206.07118 * 10 8 2 12 12 O 1.42103 * 104.27623 * 333.92878 * 10 8 2 13 13 C 1.81395 * 104.45004 * 90.00099 * 10 8 2 14 14 C 1.52997 * 109.47125 * 180.02562 * 13 10 8 15 15 C 1.50700 * 109.46941 * 179.97438 * 14 13 10 16 16 H 1.07994 * 120.00117 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99956 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00042 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00199 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47327 * 89.99911 * 19 17 15 21 21 H 1.48499 * 109.47623 * 209.99927 * 19 17 15 22 22 H 1.48502 * 109.47073 * 329.99971 * 19 17 15 23 23 H 1.09001 * 109.47289 * 59.99796 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 299.99712 * 1 2 3 26 26 H 1.08996 * 112.84814 * 288.80894 * 4 2 1 27 27 H 1.08996 * 113.61809 * 334.57040 * 5 4 2 28 28 H 1.09007 * 113.61519 * 105.47398 * 5 4 2 29 29 H 1.08999 * 113.61746 * 270.88045 * 6 5 4 30 30 H 1.09004 * 113.68884 * 139.99266 * 6 5 4 31 31 H 1.08996 * 113.61455 * 220.01343 * 7 6 5 32 32 H 1.09003 * 113.61486 * 89.11330 * 7 6 5 33 33 H 1.08997 * 109.47192 * 89.99362 * 9 8 2 34 34 H 1.08998 * 109.47450 * 210.00338 * 9 8 2 35 35 H 1.09005 * 109.46920 * 330.00020 * 9 8 2 36 36 H 1.09007 * 109.46966 * 300.00032 * 13 10 8 37 37 H 1.09004 * 109.46911 * 59.99837 * 13 10 8 38 38 H 1.08997 * 109.47083 * 299.99869 * 14 13 10 39 39 H 1.08995 * 109.47290 * 60.00168 * 14 13 10 40 40 H 0.97003 * 120.00419 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.4726 -0.3276 -1.6461 6 6 2.9921 -0.3572 -3.1066 7 6 1.5811 -0.0722 -2.5657 8 7 2.0183 -0.6907 1.1961 9 6 1.6644 -2.0933 1.4279 10 16 2.9703 0.1140 2.2863 11 8 3.7314 -0.9109 2.9104 12 8 3.6005 1.1300 1.5182 13 6 1.7964 0.8410 3.4626 14 6 2.5632 1.6207 4.5325 15 6 1.5878 2.2252 5.5093 16 1 0.5271 2.0685 5.3802 17 6 2.0497 2.9774 6.5685 18 7 3.3413 3.1679 6.7260 19 14 0.8407 3.7261 7.7798 20 1 0.5945 2.7696 8.8887 21 1 1.4053 4.9852 8.3285 22 1 -0.4388 4.0187 7.0852 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8757 -1.7981 -1.2130 27 1 3.7639 0.6648 -1.3023 28 1 4.2152 -1.0915 -1.4152 29 1 3.0896 -1.3348 -3.5787 30 1 3.3969 0.4500 -3.7172 31 1 0.7966 -0.6297 -3.0773 32 1 1.3552 0.9902 -2.4733 33 1 2.4156 -2.7378 0.9715 34 1 1.6236 -2.2855 2.5001 35 1 0.6903 -2.3003 0.9845 36 1 1.1233 1.5160 2.9339 37 1 1.2176 0.0475 3.9355 38 1 3.2365 0.9460 5.0611 39 1 3.1417 2.4141 4.0592 40 1 3.6663 3.6968 7.4714 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356126412.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:33 Heat of formation + Delta-G solvation = -67.309325 kcal Electronic energy + Delta-G solvation = -20342.517185 eV Core-core repulsion = 17284.735522 eV Total energy + Delta-G solvation = -3057.781663 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.43314 -36.59232 -35.98154 -35.35688 -33.87893 -31.14828 -30.75613 -26.64515 -25.80955 -25.39360 -25.28743 -21.81845 -21.05803 -19.39344 -18.46941 -17.50516 -16.52049 -16.22251 -15.57775 -15.34153 -14.88402 -14.57226 -14.40171 -13.94729 -13.38775 -12.93938 -12.85940 -12.53309 -12.51763 -12.36523 -12.29076 -11.78340 -11.73457 -11.54700 -11.52802 -11.22681 -11.07806 -11.06548 -10.95067 -10.53013 -10.40819 -10.37014 -10.34066 -10.24268 -9.74097 -9.28684 -8.67296 -8.50044 -6.11999 -4.17609 0.79866 3.06207 3.26123 3.32319 3.35076 4.31971 4.39565 4.46440 4.55143 4.61457 4.69722 4.80952 4.95882 5.18942 5.23070 5.25927 5.33387 5.53888 5.57312 5.60618 5.62416 5.68815 5.74290 5.77956 5.80916 5.83384 5.89059 6.00500 6.07966 6.14421 6.34100 6.49553 6.51669 6.78346 7.30762 7.36944 7.80959 8.18288 8.85801 9.47106 10.99066 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.031038 B = 0.004440 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.903904 B = 6305.020670 C = 6463.228755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.152 3.848 3 H 0.101 0.899 4 C -0.115 4.115 5 C -0.139 4.139 6 C -0.144 4.144 7 C -0.132 4.132 8 N -1.003 6.003 9 C 0.096 3.904 10 S 2.589 3.411 11 O -0.965 6.965 12 O -0.963 6.963 13 C -0.591 4.591 14 C 0.028 3.972 15 C -0.520 4.520 16 H 0.061 0.939 17 C 0.058 3.942 18 N -0.891 5.891 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.032 0.968 39 H 0.033 0.967 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.909 -8.733 -16.973 19.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.046 3.954 3 H 0.119 0.881 4 C -0.135 4.135 5 C -0.177 4.177 6 C -0.181 4.181 7 C -0.170 4.170 8 N -0.839 5.839 9 C -0.049 4.049 10 S 2.688 3.312 11 O -0.955 6.955 12 O -0.953 6.953 13 C -0.724 4.724 14 C -0.011 4.011 15 C -0.560 4.560 16 H 0.079 0.921 17 C -0.145 4.145 18 N -0.529 5.529 19 Si 0.727 3.273 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.812 -8.649 -16.914 19.597 hybrid contribution -1.287 0.422 0.962 1.662 sum -6.099 -8.227 -15.952 18.956 Atomic orbital electron populations 1.22180 0.95240 1.02433 1.02478 1.20930 0.94039 0.96681 0.83725 0.88097 1.22855 0.96959 1.00240 0.93461 1.23010 0.96263 1.02858 0.95549 1.22810 0.96897 1.01568 0.96823 1.22900 0.96845 1.01173 0.96088 1.57733 1.70551 1.20553 1.35084 1.21337 1.00646 0.81207 1.01735 1.05745 0.76242 0.74312 0.74947 1.93533 1.67813 1.56755 1.77417 1.93520 1.73272 1.59890 1.68656 1.30510 1.15654 1.11648 1.14603 1.18956 0.95602 0.94906 0.91629 1.21006 0.92910 1.32334 1.09703 0.92075 1.25067 0.95369 0.96172 0.97862 1.69954 1.12630 1.39522 1.30762 0.86472 0.80996 0.78718 0.81115 1.20463 1.20986 1.19761 0.91500 0.92148 0.91953 0.89040 0.89024 0.91804 0.90575 0.91548 0.91620 0.89844 0.92920 0.91145 0.91323 0.86373 0.86399 0.94941 0.94880 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 8.97 37.16 0.33 -1.24 16 2 C 0.15 1.82 2.40 -67.93 -0.16 1.65 16 3 H 0.10 1.33 6.67 -51.93 -0.35 0.99 16 4 C -0.12 -1.21 3.18 -89.81 -0.29 -1.49 16 5 C -0.14 -1.63 7.63 -25.92 -0.20 -1.83 16 6 C -0.14 -1.31 8.08 -25.92 -0.21 -1.52 16 7 C -0.13 -1.15 6.68 -25.92 -0.17 -1.33 16 8 N -1.00 -13.76 3.00 -114.61 -0.34 -14.10 16 9 C 0.10 1.09 9.18 59.85 0.55 1.64 16 10 S 2.59 47.68 5.37 -107.50 -0.58 47.10 16 11 O -0.96 -20.48 17.09 -57.54 -0.98 -21.46 16 12 O -0.96 -19.86 16.57 -57.54 -0.95 -20.81 16 13 C -0.59 -11.54 6.11 37.16 0.23 -11.31 16 14 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 15 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 16 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 19 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 H 0.07 0.55 7.45 -51.93 -0.39 0.16 16 24 H 0.06 0.51 6.66 -51.93 -0.35 0.17 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.09 0.89 7.55 -51.93 -0.39 0.50 16 27 H 0.09 1.22 7.96 -51.93 -0.41 0.81 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.72 8.10 -51.93 -0.42 0.29 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.80 7.79 -51.93 -0.40 0.40 16 35 H 0.07 0.59 6.43 -51.93 -0.33 0.26 16 36 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 37 H 0.12 2.08 8.14 -51.92 -0.42 1.65 16 38 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 LS Contribution 334.05 15.07 5.03 5.03 Total: -1.00 -33.57 334.05 -9.39 -42.96 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -6.81 Total: -0.95 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: -0.47 Total: -28.10 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.39 Total: -40.01 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -1.94 Total: -42.27 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 47.68 SS G_CDS: -0.58 Total: 47.10 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.57 -9.39 -42.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356126412.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.353 kcal (2) G-P(sol) polarization free energy of solvation -33.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds