Wall clock time and date at job start Mon Mar 30 2020 02:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47194 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00158 * 2 1 3 5 5 C 1.53775 * 113.61317 * 157.49696 * 4 2 1 6 6 C 1.53779 * 87.08045 * 220.02006 * 5 4 2 7 7 C 1.53779 * 87.08153 * 25.43482 * 6 5 4 8 8 N 1.46500 * 109.47007 * 120.00377 * 2 1 3 9 9 C 1.46505 * 120.00155 * 60.00027 * 8 2 1 10 10 S 1.65599 * 120.00129 * 239.99904 * 8 2 1 11 11 O 1.42099 * 104.27638 * 206.07118 * 10 8 2 12 12 O 1.42103 * 104.27623 * 333.92878 * 10 8 2 13 13 C 1.81395 * 104.45004 * 90.00099 * 10 8 2 14 14 C 1.52997 * 109.47125 * 180.02562 * 13 10 8 15 15 C 1.50700 * 109.46941 * 179.97438 * 14 13 10 16 16 H 1.07994 * 120.00117 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99956 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00042 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00199 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47327 * 89.99911 * 19 17 15 21 21 H 1.48499 * 109.47623 * 209.99927 * 19 17 15 22 22 H 1.48502 * 109.47073 * 329.99971 * 19 17 15 23 23 H 1.09001 * 109.47289 * 59.99796 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 299.99712 * 1 2 3 26 26 H 1.08996 * 112.84814 * 288.80894 * 4 2 1 27 27 H 1.08996 * 113.61809 * 334.57040 * 5 4 2 28 28 H 1.09007 * 113.61519 * 105.47398 * 5 4 2 29 29 H 1.08999 * 113.61746 * 270.88045 * 6 5 4 30 30 H 1.09004 * 113.68884 * 139.99266 * 6 5 4 31 31 H 1.08996 * 113.61455 * 220.01343 * 7 6 5 32 32 H 1.09003 * 113.61486 * 89.11330 * 7 6 5 33 33 H 1.08997 * 109.47192 * 89.99362 * 9 8 2 34 34 H 1.08998 * 109.47450 * 210.00338 * 9 8 2 35 35 H 1.09005 * 109.46920 * 330.00020 * 9 8 2 36 36 H 1.09007 * 109.46966 * 300.00032 * 13 10 8 37 37 H 1.09004 * 109.46911 * 59.99837 * 13 10 8 38 38 H 1.08997 * 109.47083 * 299.99869 * 14 13 10 39 39 H 1.08995 * 109.47290 * 60.00168 * 14 13 10 40 40 H 0.97003 * 120.00419 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.4726 -0.3276 -1.6461 6 6 2.9921 -0.3572 -3.1066 7 6 1.5811 -0.0722 -2.5657 8 7 2.0183 -0.6907 1.1961 9 6 1.6644 -2.0933 1.4279 10 16 2.9703 0.1140 2.2863 11 8 3.7314 -0.9109 2.9104 12 8 3.6005 1.1300 1.5182 13 6 1.7964 0.8410 3.4626 14 6 2.5632 1.6207 4.5325 15 6 1.5878 2.2252 5.5093 16 1 0.5271 2.0685 5.3802 17 6 2.0497 2.9774 6.5685 18 7 3.3413 3.1679 6.7260 19 14 0.8407 3.7261 7.7798 20 1 0.5945 2.7696 8.8887 21 1 1.4053 4.9852 8.3285 22 1 -0.4388 4.0187 7.0852 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8757 -1.7981 -1.2130 27 1 3.7639 0.6648 -1.3023 28 1 4.2152 -1.0915 -1.4152 29 1 3.0896 -1.3348 -3.5787 30 1 3.3969 0.4500 -3.7172 31 1 0.7966 -0.6297 -3.0773 32 1 1.3552 0.9902 -2.4733 33 1 2.4156 -2.7378 0.9715 34 1 1.6236 -2.2855 2.5001 35 1 0.6903 -2.3003 0.9845 36 1 1.1233 1.5160 2.9339 37 1 1.2176 0.0475 3.9355 38 1 3.2365 0.9460 5.0611 39 1 3.1417 2.4141 4.0592 40 1 3.6663 3.6968 7.4714 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356126412.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:33 Heat of formation + Delta-G solvation = -89.906052 kcal Electronic energy + Delta-G solvation = -20343.497053 eV Core-core repulsion = 17284.735522 eV Total energy + Delta-G solvation = -3058.761531 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.27939 -38.19190 -37.08251 -36.84043 -35.91253 -33.14310 -31.65226 -27.65551 -27.52486 -26.45031 -26.07454 -23.61138 -22.18164 -20.22900 -19.82504 -19.07470 -18.29786 -17.43401 -17.13745 -16.55157 -16.34788 -15.96474 -15.50584 -15.08774 -14.96427 -14.45263 -13.87645 -13.76349 -13.61799 -13.54211 -13.31546 -13.28341 -13.17006 -12.94096 -12.80686 -12.80035 -12.52111 -12.36194 -12.26415 -12.13341 -11.95137 -11.73965 -11.37774 -11.19090 -11.16622 -10.99494 -10.66367 -9.80237 -8.27351 -6.42076 -0.70241 1.39995 1.42181 1.53377 1.76349 2.37192 2.86310 3.05816 3.17972 3.55811 3.79729 3.81598 3.94989 4.04238 4.08195 4.13898 4.34442 4.44987 4.50908 4.69894 4.74627 4.80121 4.90198 4.91210 4.94521 4.97015 5.04312 5.12226 5.14812 5.24165 5.24431 5.26653 5.40703 5.49510 5.66413 5.68400 5.78966 6.04263 6.71468 7.28371 8.85065 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.031038 B = 0.004440 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.903904 B = 6305.020670 C = 6463.228755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.081 0.919 4 C -0.112 4.112 5 C -0.158 4.158 6 C -0.136 4.136 7 C -0.121 4.121 8 N -0.991 5.991 9 C 0.085 3.915 10 S 2.607 3.393 11 O -0.997 6.997 12 O -0.991 6.991 13 C -0.589 4.589 14 C 0.021 3.979 15 C -0.540 4.540 16 H 0.076 0.924 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.976 3.024 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.257 1.257 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.056 0.944 26 H 0.106 0.894 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.004 0.996 39 H 0.005 0.995 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.919 -9.689 -18.227 22.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.099 0.901 4 C -0.132 4.132 5 C -0.196 4.196 6 C -0.173 4.173 7 C -0.159 4.159 8 N -0.830 5.830 9 C -0.059 4.059 10 S 2.705 3.295 11 O -0.987 6.987 12 O -0.982 6.982 13 C -0.721 4.721 14 C -0.018 4.018 15 C -0.579 4.579 16 H 0.094 0.906 17 C -0.202 4.202 18 N -0.575 5.575 19 Si 0.799 3.201 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.181 1.181 23 H 0.103 0.897 24 H 0.097 0.903 25 H 0.075 0.925 26 H 0.124 0.876 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.124 0.876 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.022 0.978 39 H 0.023 0.977 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.832 -9.605 -18.166 21.991 hybrid contribution -0.304 0.671 1.269 1.467 sum -8.136 -8.934 -16.897 20.773 Atomic orbital electron populations 1.22176 0.92727 1.03877 1.03163 1.21197 0.95972 0.95784 0.83281 0.90070 1.22907 0.95786 1.01046 0.93507 1.23065 0.97171 1.01118 0.98223 1.22807 0.96947 1.02530 0.95026 1.22873 0.97104 1.01369 0.94600 1.57361 1.70089 1.21335 1.34242 1.21653 1.02767 0.79279 1.02210 1.04866 0.76166 0.73635 0.74796 1.93483 1.69175 1.57531 1.78523 1.93479 1.74349 1.61239 1.69099 1.30408 1.15873 1.12110 1.13660 1.18809 0.95570 0.94321 0.93069 1.21512 0.93898 1.32307 1.10174 0.90603 1.26143 0.97302 0.96666 1.00128 1.70106 1.15027 1.40563 1.31762 0.85288 0.78729 0.77698 0.78398 1.19511 1.20761 1.18059 0.89687 0.90272 0.92492 0.87550 0.91671 0.92876 0.89106 0.91301 0.89275 0.89862 0.92457 0.91339 0.87626 0.84329 0.84235 0.97802 0.97714 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 8.97 71.98 0.65 -1.89 16 2 C 0.14 3.17 2.40 44.99 0.11 3.27 16 3 H 0.08 2.13 6.67 -2.39 -0.02 2.12 16 4 C -0.11 -2.11 3.18 -10.27 -0.03 -2.14 16 5 C -0.16 -3.66 7.63 31.12 0.24 -3.42 16 6 C -0.14 -2.22 8.08 31.12 0.25 -1.97 16 7 C -0.12 -1.76 6.68 31.12 0.21 -1.55 16 8 N -0.99 -25.96 3.00 -516.50 -1.55 -27.51 16 9 C 0.09 1.72 9.18 127.77 1.17 2.89 16 10 S 2.61 97.99 5.37 -56.49 -0.30 97.69 16 11 O -1.00 -43.48 17.09 -127.65 -2.18 -45.66 16 12 O -0.99 -42.66 16.57 -127.65 -2.12 -44.78 16 13 C -0.59 -23.07 6.11 71.98 0.44 -22.63 16 14 C 0.02 1.14 4.98 29.85 0.15 1.29 16 15 C -0.54 -30.38 9.11 25.60 0.23 -30.15 16 16 H 0.08 3.93 7.74 -2.91 -0.02 3.90 16 17 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 18 N -0.94 -57.60 13.29 21.45 0.28 -57.32 16 19 Si 0.98 43.49 29.54 68.60 2.03 45.52 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 22 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 23 H 0.08 1.06 7.45 -2.39 -0.02 1.04 16 24 H 0.08 0.96 6.66 -2.38 -0.02 0.95 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.11 1.71 7.55 -2.39 -0.02 1.69 16 27 H 0.06 1.83 7.96 -2.39 -0.02 1.81 16 28 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 1.22 8.10 -2.39 -0.02 1.20 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 1.43 7.79 -2.39 -0.02 1.41 16 35 H 0.11 1.36 6.43 -2.38 -0.02 1.35 16 36 H 0.14 4.78 8.14 -2.39 -0.02 4.77 16 37 H 0.14 4.79 8.14 -2.39 -0.02 4.77 16 38 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -75.10 334.05 1.03 -74.07 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.99 Total: 14.05 kcal Atomic # 6 Polarization: -59.94 SS G_CDS: 3.88 Total: -56.06 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -1.27 Total: -84.83 kcal Atomic # 8 Polarization: -86.14 SS G_CDS: -4.30 Total: -90.44 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 97.99 SS G_CDS: -0.30 Total: 97.69 kcal Total: -75.10 1.03 -74.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356126412.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.836 kcal (2) G-P(sol) polarization free energy of solvation -75.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds