Wall clock time and date at job start Mon Mar 30 2020 02:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.05468 * 2 1 4 4 C 1.53875 * 110.03153 * 238.58158 * 2 1 3 5 5 C 1.54269 * 106.60139 * 240.71985 * 4 2 1 6 6 C 1.54895 * 104.19322 * 336.38805 * 5 4 2 7 7 C 1.54273 * 110.02854 * 121.41837 * 2 1 3 8 8 H 1.08993 * 110.59963 * 24.15629 * 7 2 1 9 9 C 1.53002 * 110.48549 * 261.56901 * 7 2 1 10 10 N 1.46495 * 109.46973 * 178.77509 * 9 7 2 11 11 S 1.65608 * 119.99695 * 165.00079 * 10 9 7 12 12 O 1.42102 * 104.27363 * 181.06921 * 11 10 9 13 13 O 1.42097 * 104.27711 * 308.92535 * 11 10 9 14 14 C 1.81401 * 104.44945 * 64.99881 * 11 10 9 15 15 C 1.52998 * 109.46866 * 179.97438 * 14 11 10 16 16 C 1.50701 * 109.46802 * 179.97438 * 15 14 11 17 17 H 1.08008 * 120.00279 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00102 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99952 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99644 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46688 * 90.00089 * 20 18 16 22 22 H 1.48499 * 109.46809 * 209.99805 * 20 18 16 23 23 H 1.48492 * 109.47042 * 330.00095 * 20 18 16 24 24 H 1.09006 * 109.46684 * 298.58472 * 1 2 3 25 25 H 1.08999 * 109.47027 * 58.57712 * 1 2 3 26 26 H 1.08997 * 109.47523 * 178.58572 * 1 2 3 27 27 H 1.08998 * 110.03077 * 121.43009 * 4 2 1 28 28 H 1.09000 * 110.02754 * 0.02562 * 4 2 1 29 29 H 1.08992 * 110.48548 * 217.71264 * 5 4 2 30 30 H 1.08994 * 110.59794 * 95.12149 * 5 4 2 31 31 H 1.09002 * 110.75757 * 279.63094 * 6 5 4 32 32 H 1.08997 * 110.91317 * 156.32854 * 6 5 4 33 33 H 1.09000 * 109.46855 * 58.77005 * 9 7 2 34 34 H 1.09003 * 109.47079 * 298.77910 * 9 7 2 35 35 H 0.96999 * 120.00130 * 344.99842 * 10 9 7 36 36 H 1.08996 * 109.47000 * 300.00248 * 14 11 10 37 37 H 1.09006 * 109.46904 * 59.99979 * 14 11 10 38 38 H 1.08993 * 109.47317 * 300.00064 * 15 14 11 39 39 H 1.08998 * 109.47275 * 60.00757 * 15 14 11 40 40 H 0.97002 * 119.99717 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0571 -0.7536 -1.2337 5 6 2.8874 -1.9408 -0.7035 6 6 3.3137 -1.5009 0.7191 7 6 2.0584 -0.7556 1.2369 8 1 1.3151 -1.4659 1.5988 9 6 2.4392 0.2296 2.3439 10 7 2.9098 -0.5116 3.5166 11 16 3.7312 0.2765 4.7194 12 8 4.0436 -0.7444 5.6573 13 8 4.7577 0.9838 4.0374 14 6 2.5171 1.4306 5.4156 15 6 3.1633 2.2269 6.5510 16 6 2.1548 3.1862 7.1289 17 1 1.1531 3.2238 6.7268 18 6 2.5110 4.0160 8.1709 19 7 1.6308 4.8527 8.6755 20 14 4.2433 3.9505 8.8667 21 1 5.1075 4.9106 8.1342 22 1 4.2122 4.3115 10.3068 23 1 4.7872 2.5774 8.7121 24 1 -0.3633 0.4917 0.9025 25 1 -0.3633 0.5358 -0.8769 26 1 -0.3634 -1.0273 -0.0254 27 1 2.6867 -0.0954 -1.8324 28 1 1.2228 -1.1189 -1.8326 29 1 3.7636 -2.1039 -1.3309 30 1 2.2790 -2.8439 -0.6573 31 1 4.1710 -0.8292 0.6752 32 1 3.5343 -2.3661 1.3442 33 1 1.5677 0.8250 2.6159 34 1 3.2319 0.8876 1.9878 35 1 2.7402 -1.4640 3.5886 36 1 2.1790 2.1151 4.6377 37 1 1.6652 0.8717 5.8032 38 1 3.5010 1.5421 7.3287 39 1 4.0152 2.7858 6.1638 40 1 1.8813 5.4361 9.4088 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359939235.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:35 Heat of formation + Delta-G solvation = -108.101085 kcal Electronic energy + Delta-G solvation = -19730.620098 eV Core-core repulsion = 16671.069572 eV Total energy + Delta-G solvation = -3059.550527 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.16751 -36.68462 -35.56202 -34.87546 -33.94287 -31.48838 -31.43710 -29.45364 -25.97055 -25.83655 -23.69477 -21.32222 -20.71493 -19.96139 -18.82608 -17.54412 -16.95670 -16.40015 -15.60205 -15.39881 -15.08725 -14.53682 -14.50484 -14.27408 -13.78017 -13.53796 -13.18103 -12.82878 -12.76060 -12.18422 -12.10372 -11.89183 -11.70829 -11.60844 -11.28981 -11.25117 -11.18060 -11.02718 -10.94038 -10.84072 -10.74338 -10.60537 -10.44182 -10.13959 -9.78225 -9.47556 -9.11914 -8.66130 -6.16482 -4.17664 0.69805 3.05770 3.26921 3.34234 3.38652 4.14192 4.30517 4.32371 4.36150 4.43748 4.65076 4.96135 5.04898 5.12008 5.15482 5.18376 5.24804 5.33017 5.35661 5.45599 5.53072 5.54801 5.61831 5.63583 5.72342 5.78739 5.88050 5.94718 6.01709 6.03761 6.15448 6.26112 6.29365 6.82456 6.93532 7.07667 7.55183 8.36725 8.84590 9.43301 10.95923 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.029423 B = 0.004114 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.408479 B = 6804.654241 C = 7398.215851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.077 0.923 4 C -0.120 4.120 5 C -0.125 4.125 6 C -0.121 4.121 7 C -0.094 4.094 8 H 0.083 0.917 9 C 0.121 3.879 10 N -1.124 6.124 11 S 2.592 3.408 12 O -0.969 6.969 13 O -0.967 6.967 14 C -0.583 4.583 15 C -0.007 4.007 16 C -0.519 4.519 17 H 0.077 0.923 18 C 0.071 3.929 19 N -0.896 5.896 20 Si 0.870 3.130 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.262 1.262 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.412 0.588 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.032 0.968 39 H 0.028 0.972 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.813 -12.498 -18.776 22.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 H 0.096 0.904 4 C -0.158 4.158 5 C -0.163 4.163 6 C -0.159 4.159 7 C -0.114 4.114 8 H 0.101 0.899 9 C -0.006 4.006 10 N -0.882 5.882 11 S 2.689 3.311 12 O -0.959 6.959 13 O -0.957 6.957 14 C -0.716 4.716 15 C -0.047 4.047 16 C -0.558 4.558 17 H 0.096 0.904 18 C -0.131 4.131 19 N -0.534 5.534 20 Si 0.696 3.304 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.186 1.186 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.246 0.754 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.051 0.949 39 H 0.046 0.954 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.118 -12.325 -18.448 22.187 hybrid contribution -0.002 -0.024 0.471 0.472 sum 0.116 -12.349 -17.977 21.810 Atomic orbital electron populations 1.21905 0.94789 1.01722 1.01924 1.21768 0.95820 0.99793 0.93848 0.90435 1.22218 0.99369 0.97029 0.97168 1.22346 0.99453 0.97943 0.96525 1.22582 0.97536 1.00116 0.95664 1.22279 0.97826 0.97083 0.94196 0.89909 1.21381 0.99593 0.94304 0.85308 1.55679 1.77471 1.20454 1.34614 1.05517 0.76393 0.75646 0.73574 1.93557 1.83419 1.56155 1.62770 1.93542 1.54019 1.75333 1.72798 1.30292 1.15990 1.14405 1.10948 1.19407 0.97344 0.96024 0.91900 1.20857 0.98539 1.19064 1.17386 0.90441 1.24989 0.97345 0.94706 0.96084 1.69881 1.34529 1.23099 1.25879 0.86919 0.85142 0.79558 0.78801 1.19662 1.20762 1.18611 0.92323 0.92704 0.92699 0.91841 0.91788 0.91823 0.91821 0.90903 0.91497 0.91634 0.90164 0.75439 0.85795 0.85539 0.94937 0.95368 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.84 37.16 0.33 -0.73 16 2 C -0.09 -0.73 3.07 -89.50 -0.27 -1.01 16 3 H 0.08 0.63 7.84 -51.93 -0.41 0.22 16 4 C -0.12 -0.87 6.46 -25.61 -0.17 -1.04 16 5 C -0.13 -0.93 6.83 -25.07 -0.17 -1.10 16 6 C -0.12 -1.07 6.14 -24.73 -0.15 -1.22 16 7 C -0.09 -0.81 2.46 -88.95 -0.22 -1.03 16 8 H 0.08 0.67 7.86 -51.93 -0.41 0.26 16 9 C 0.12 1.27 5.42 -4.04 -0.02 1.25 16 10 N -1.12 -13.51 5.69 -10.61 -0.06 -13.57 16 11 S 2.59 43.33 5.46 -107.50 -0.59 42.74 16 12 O -0.97 -18.96 18.08 -57.54 -1.04 -20.00 16 13 O -0.97 -18.80 17.50 -57.54 -1.01 -19.81 16 14 C -0.58 -10.57 6.01 37.16 0.22 -10.35 16 15 C -0.01 -0.18 4.05 -27.88 -0.11 -0.29 16 16 C -0.52 -14.52 9.66 -34.44 -0.33 -14.86 16 17 H 0.08 2.27 7.99 -52.48 -0.42 1.85 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 20 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.42 7.67 -51.93 -0.40 0.03 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.72 8.02 -51.93 -0.42 0.30 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.91 7.65 -51.93 -0.40 0.51 16 35 H 0.41 4.16 8.62 -34.48 -0.30 3.86 16 36 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 37 H 0.13 2.09 8.14 -51.92 -0.42 1.67 16 38 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 39 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 40 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 333.45 15.07 5.03 5.03 Total: -1.00 -34.05 333.45 -9.47 -43.51 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.90 Total: -0.03 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: -1.00 Total: -28.41 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.71 Total: -39.90 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -2.05 Total: -39.81 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 16 Polarization: 43.33 SS G_CDS: -0.59 Total: 42.74 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.05 -9.47 -43.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359939235.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.589 kcal (2) G-P(sol) polarization free energy of solvation -34.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds