Wall clock time and date at job start Mon Mar 30 2020 02:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.05468 * 2 1 4 4 C 1.53875 * 110.03153 * 238.58158 * 2 1 3 5 5 C 1.54269 * 106.60139 * 240.71985 * 4 2 1 6 6 C 1.54895 * 104.19322 * 336.38805 * 5 4 2 7 7 C 1.54273 * 110.02854 * 121.41837 * 2 1 3 8 8 H 1.08993 * 110.59963 * 24.15629 * 7 2 1 9 9 C 1.53002 * 110.48549 * 261.56901 * 7 2 1 10 10 N 1.46495 * 109.46973 * 178.77509 * 9 7 2 11 11 S 1.65608 * 119.99695 * 165.00079 * 10 9 7 12 12 O 1.42102 * 104.27363 * 181.06921 * 11 10 9 13 13 O 1.42097 * 104.27711 * 308.92535 * 11 10 9 14 14 C 1.81401 * 104.44945 * 64.99881 * 11 10 9 15 15 C 1.52998 * 109.46866 * 179.97438 * 14 11 10 16 16 C 1.50701 * 109.46802 * 179.97438 * 15 14 11 17 17 H 1.08008 * 120.00279 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00102 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99952 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99644 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46688 * 90.00089 * 20 18 16 22 22 H 1.48499 * 109.46809 * 209.99805 * 20 18 16 23 23 H 1.48492 * 109.47042 * 330.00095 * 20 18 16 24 24 H 1.09006 * 109.46684 * 298.58472 * 1 2 3 25 25 H 1.08999 * 109.47027 * 58.57712 * 1 2 3 26 26 H 1.08997 * 109.47523 * 178.58572 * 1 2 3 27 27 H 1.08998 * 110.03077 * 121.43009 * 4 2 1 28 28 H 1.09000 * 110.02754 * 0.02562 * 4 2 1 29 29 H 1.08992 * 110.48548 * 217.71264 * 5 4 2 30 30 H 1.08994 * 110.59794 * 95.12149 * 5 4 2 31 31 H 1.09002 * 110.75757 * 279.63094 * 6 5 4 32 32 H 1.08997 * 110.91317 * 156.32854 * 6 5 4 33 33 H 1.09000 * 109.46855 * 58.77005 * 9 7 2 34 34 H 1.09003 * 109.47079 * 298.77910 * 9 7 2 35 35 H 0.96999 * 120.00130 * 344.99842 * 10 9 7 36 36 H 1.08996 * 109.47000 * 300.00248 * 14 11 10 37 37 H 1.09006 * 109.46904 * 59.99979 * 14 11 10 38 38 H 1.08993 * 109.47317 * 300.00064 * 15 14 11 39 39 H 1.08998 * 109.47275 * 60.00757 * 15 14 11 40 40 H 0.97002 * 119.99717 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0571 -0.7536 -1.2337 5 6 2.8874 -1.9408 -0.7035 6 6 3.3137 -1.5009 0.7191 7 6 2.0584 -0.7556 1.2369 8 1 1.3151 -1.4659 1.5988 9 6 2.4392 0.2296 2.3439 10 7 2.9098 -0.5116 3.5166 11 16 3.7312 0.2765 4.7194 12 8 4.0436 -0.7444 5.6573 13 8 4.7577 0.9838 4.0374 14 6 2.5171 1.4306 5.4156 15 6 3.1633 2.2269 6.5510 16 6 2.1548 3.1862 7.1289 17 1 1.1531 3.2238 6.7268 18 6 2.5110 4.0160 8.1709 19 7 1.6308 4.8527 8.6755 20 14 4.2433 3.9505 8.8667 21 1 5.1075 4.9106 8.1342 22 1 4.2122 4.3115 10.3068 23 1 4.7872 2.5774 8.7121 24 1 -0.3633 0.4917 0.9025 25 1 -0.3633 0.5358 -0.8769 26 1 -0.3634 -1.0273 -0.0254 27 1 2.6867 -0.0954 -1.8324 28 1 1.2228 -1.1189 -1.8326 29 1 3.7636 -2.1039 -1.3309 30 1 2.2790 -2.8439 -0.6573 31 1 4.1710 -0.8292 0.6752 32 1 3.5343 -2.3661 1.3442 33 1 1.5677 0.8250 2.6159 34 1 3.2319 0.8876 1.9878 35 1 2.7402 -1.4640 3.5886 36 1 2.1790 2.1151 4.6377 37 1 1.6652 0.8717 5.8032 38 1 3.5010 1.5421 7.3287 39 1 4.0152 2.7858 6.1638 40 1 1.8813 5.4361 9.4088 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359939235.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:34 Heat of formation + Delta-G solvation = -132.161592 kcal Electronic energy + Delta-G solvation = -19731.663440 eV Core-core repulsion = 16671.069572 eV Total energy + Delta-G solvation = -3060.593868 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.83933 -38.14621 -37.02568 -35.88735 -35.82302 -33.46644 -32.04039 -30.23112 -27.87422 -26.50463 -24.43399 -23.18861 -21.37805 -20.78931 -20.01979 -19.31583 -18.35874 -17.56428 -17.02861 -16.44503 -16.34800 -15.93150 -15.51023 -15.31146 -15.04760 -14.81821 -14.37227 -13.85041 -13.78955 -13.50370 -13.24630 -13.21663 -13.11101 -13.06071 -12.93719 -12.78931 -12.23299 -11.96380 -11.88307 -11.80634 -11.71668 -11.56663 -11.49063 -11.43130 -11.23544 -11.18785 -10.84183 -10.28648 -8.36427 -6.42060 -0.68105 1.32359 1.34201 1.44406 1.84222 2.29851 2.78028 2.97687 3.26778 3.63280 3.70163 3.79000 3.92079 4.10055 4.27853 4.39431 4.48265 4.51235 4.56088 4.59195 4.70180 4.74306 4.79670 4.87112 5.00325 5.06893 5.08565 5.13194 5.14945 5.25078 5.33286 5.37986 5.41831 5.47876 5.54694 5.62902 6.16044 6.17120 6.64029 7.22399 8.79130 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.029423 B = 0.004114 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.408479 B = 6804.654241 C = 7398.215851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.119 4.119 5 C -0.122 4.122 6 C -0.127 4.127 7 C -0.089 4.089 8 H 0.094 0.906 9 C 0.110 3.890 10 N -1.106 6.106 11 S 2.624 3.376 12 O -0.995 6.995 13 O -0.992 6.992 14 C -0.589 4.589 15 C -0.018 4.018 16 C -0.527 4.527 17 H 0.049 0.951 18 C 0.013 3.987 19 N -0.940 5.940 20 Si 0.925 3.075 21 H -0.260 1.260 22 H -0.274 1.274 23 H -0.250 1.250 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.425 0.575 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.032 0.968 39 H 0.031 0.969 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.392 -13.793 -19.989 24.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.091 0.909 4 C -0.157 4.157 5 C -0.160 4.160 6 C -0.164 4.164 7 C -0.109 4.109 8 H 0.112 0.888 9 C -0.016 4.016 10 N -0.868 5.868 11 S 2.720 3.280 12 O -0.986 6.986 13 O -0.982 6.982 14 C -0.721 4.721 15 C -0.057 4.057 16 C -0.566 4.566 17 H 0.068 0.932 18 C -0.185 4.185 19 N -0.580 5.580 20 Si 0.748 3.252 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.173 1.173 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.261 0.739 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.533 -13.628 -19.660 23.927 hybrid contribution -0.223 0.357 0.752 0.862 sum 0.310 -13.271 -18.907 23.102 Atomic orbital electron populations 1.21896 0.94184 1.02140 1.01985 1.21779 0.96302 0.99539 0.93700 0.90908 1.22219 0.99648 0.96888 0.96937 1.22337 0.99738 0.98286 0.95616 1.22616 0.97130 0.99948 0.96750 1.22276 0.98053 0.96850 0.93752 0.88767 1.21646 0.99878 0.94886 0.85158 1.55222 1.77014 1.20918 1.33613 1.04325 0.75665 0.74682 0.73345 1.93516 1.83937 1.56753 1.64350 1.93512 1.55250 1.76129 1.73311 1.30293 1.16916 1.15036 1.09832 1.19377 0.96741 0.95868 0.93749 1.21190 0.98426 1.19762 1.17257 0.93228 1.25877 1.01477 0.94480 0.96697 1.70008 1.36749 1.24353 1.26883 0.86020 0.80328 0.80371 0.78487 1.18506 1.19933 1.17333 0.92717 0.92224 0.92114 0.91868 0.90879 0.91533 0.91012 0.92278 0.91304 0.90228 0.90926 0.73871 0.84214 0.84133 0.94999 0.95041 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.84 71.98 0.64 -1.15 16 2 C -0.09 -1.29 3.07 -10.07 -0.03 -1.32 16 3 H 0.07 1.07 7.84 -2.39 -0.02 1.05 16 4 C -0.12 -1.48 6.46 31.32 0.20 -1.28 16 5 C -0.12 -1.56 6.83 31.67 0.22 -1.35 16 6 C -0.13 -2.00 6.14 31.89 0.20 -1.81 16 7 C -0.09 -1.35 2.46 -9.71 -0.02 -1.38 16 8 H 0.09 1.24 7.86 -2.39 -0.02 1.22 16 9 C 0.11 2.11 5.42 86.38 0.47 2.58 16 10 N -1.11 -24.29 5.69 -187.49 -1.07 -25.35 16 11 S 2.62 83.70 5.46 -56.49 -0.31 83.39 16 12 O -1.00 -37.45 18.08 -127.65 -2.31 -39.76 16 13 O -0.99 -37.28 17.50 -127.65 -2.23 -39.51 16 14 C -0.59 -20.65 6.01 71.98 0.43 -20.21 16 15 C -0.02 -0.86 4.05 29.85 0.12 -0.73 16 16 C -0.53 -29.76 9.66 25.60 0.25 -29.51 16 17 H 0.05 2.98 7.99 -2.91 -0.02 2.96 16 18 C 0.01 0.76 5.47 84.66 0.46 1.23 16 19 N -0.94 -57.81 13.96 21.45 0.30 -57.52 16 20 Si 0.93 43.90 27.47 68.60 1.88 45.79 16 21 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.25 -11.26 6.54 99.48 0.65 -10.61 16 24 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.78 7.67 -2.39 -0.02 0.77 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 1.09 8.02 -2.39 -0.02 1.08 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.54 7.65 -2.39 -0.02 1.52 16 35 H 0.42 7.52 8.62 -96.74 -0.83 6.69 16 36 H 0.14 4.38 8.14 -2.39 -0.02 4.36 16 37 H 0.14 4.47 8.14 -2.39 -0.02 4.45 16 38 H 0.03 1.48 7.20 -2.39 -0.02 1.46 16 39 H 0.03 1.44 7.57 -2.39 -0.02 1.42 16 40 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -72.46 333.45 -0.69 -73.15 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.11 Total: 14.76 kcal Atomic # 6 Polarization: -57.86 SS G_CDS: 2.93 Total: -54.93 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -0.77 Total: -82.87 kcal Atomic # 8 Polarization: -74.73 SS G_CDS: -4.54 Total: -79.28 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.88 Total: 45.79 kcal Atomic # 16 Polarization: 83.70 SS G_CDS: -0.31 Total: 83.39 kcal Total: -72.46 -0.69 -73.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359939235.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.012 kcal (2) G-P(sol) polarization free energy of solvation -72.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds