Wall clock time and date at job start Mon Mar 30 2020 02:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.02188 * 2 1 4 4 C 1.54266 * 110.07539 * 121.41853 * 2 1 3 5 5 C 1.54887 * 104.19946 * 142.91332 * 4 2 1 6 6 C 1.54888 * 102.74554 * 322.05787 * 5 4 2 7 7 C 1.53881 * 110.03026 * 238.60607 * 2 1 3 8 8 H 1.09001 * 110.03024 * 121.33712 * 7 2 1 9 9 C 1.52995 * 110.03030 * 359.95523 * 7 2 1 10 10 N 1.46500 * 109.46920 * 175.00089 * 9 7 2 11 11 S 1.65606 * 119.99960 * 165.00023 * 10 9 7 12 12 O 1.42098 * 104.27286 * 308.92504 * 11 10 9 13 13 O 1.42100 * 104.27468 * 181.06871 * 11 10 9 14 14 C 1.81397 * 104.44910 * 64.99739 * 11 10 9 15 15 C 1.53000 * 109.46664 * 180.02562 * 14 11 10 16 16 C 1.50708 * 109.46973 * 179.97438 * 15 14 11 17 17 H 1.07991 * 119.99789 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00008 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00089 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99938 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 269.99556 * 20 18 16 22 22 H 1.48503 * 109.47261 * 149.99737 * 20 18 16 23 23 H 1.48500 * 109.47454 * 29.99730 * 20 18 16 24 24 H 1.08997 * 109.47478 * 181.39620 * 1 2 3 25 25 H 1.09011 * 109.46682 * 301.39316 * 1 2 3 26 26 H 1.08999 * 109.47039 * 61.38776 * 1 2 3 27 27 H 1.09005 * 110.48544 * 261.59181 * 4 2 1 28 28 H 1.09000 * 110.48217 * 24.23220 * 4 2 1 29 29 H 1.09001 * 110.75679 * 80.37254 * 5 4 2 30 30 H 1.09001 * 110.75756 * 203.55965 * 5 4 2 31 31 H 1.08992 * 110.48869 * 279.25968 * 6 5 4 32 32 H 1.09007 * 110.48592 * 156.61910 * 6 5 4 33 33 H 1.08992 * 109.47394 * 54.99786 * 9 7 2 34 34 H 1.09010 * 109.46977 * 294.99660 * 9 7 2 35 35 H 0.96996 * 119.99803 * 344.99511 * 10 9 7 36 36 H 1.08996 * 109.47097 * 60.00372 * 14 11 10 37 37 H 1.08996 * 109.47033 * 299.99416 * 14 11 10 38 38 H 1.08994 * 109.48028 * 59.99941 * 15 14 11 39 39 H 1.09000 * 109.47206 * 299.99795 * 15 14 11 40 40 H 0.96997 * 119.99848 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0595 -0.7553 1.2365 5 6 3.3150 -1.4997 0.7181 6 6 2.8883 -1.9397 -0.7043 7 6 2.0570 -0.7531 -1.2341 8 1 2.6853 -0.0942 -1.8334 9 6 0.8861 -1.2670 -2.0740 10 7 1.3979 -1.8766 -3.3040 11 16 0.4125 -2.8393 -4.2231 12 8 -0.1240 -3.7755 -3.2984 13 8 1.2401 -3.2630 -5.2977 14 6 -0.8840 -1.7203 -4.8208 15 6 -1.8694 -2.5013 -5.6926 16 6 -2.9470 -1.5718 -6.1887 17 1 -2.9303 -0.5285 -5.9105 18 6 -3.9535 -2.0532 -6.9988 19 7 -4.8936 -1.2420 -7.4322 20 14 -3.9819 -3.8578 -7.4806 21 1 -3.2176 -4.0460 -8.7399 22 1 -5.3868 -4.2937 -7.6845 23 1 -3.3639 -4.6684 -6.4007 24 1 -0.3634 -1.0273 0.0250 25 1 -0.3633 0.5354 0.8773 26 1 -0.3633 0.4921 -0.9022 27 1 2.3307 -0.0533 2.0251 28 1 1.3159 -1.4663 1.5965 29 1 4.1719 -0.8275 0.6739 30 1 3.5365 -2.3649 1.3430 31 1 2.2787 -2.8420 -0.6578 32 1 3.7645 -2.1021 -1.3323 33 1 0.2280 -0.4358 -2.3270 34 1 0.3292 -2.0110 -1.5043 35 1 2.3138 -1.7162 -3.5800 36 1 -0.4319 -0.9217 -5.4089 37 1 -1.4134 -1.2905 -3.9705 38 1 -2.3215 -3.2997 -5.1043 39 1 -1.3404 -2.9315 -6.5429 40 1 -5.6019 -1.5809 -8.0017 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359939236.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:37 Heat of formation + Delta-G solvation = -102.507307 kcal Electronic energy + Delta-G solvation = -19924.591477 eV Core-core repulsion = 16865.283515 eV Total energy + Delta-G solvation = -3059.307962 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.37135 -36.67724 -35.55473 -34.75399 -33.94323 -31.62370 -31.46988 -29.34107 -25.96276 -25.28533 -24.38301 -21.31139 -20.95847 -19.32261 -18.81760 -17.57846 -16.79539 -16.60772 -15.79937 -15.51252 -15.01406 -14.61208 -14.43496 -14.27217 -13.84154 -13.60419 -12.96802 -12.77229 -12.63691 -12.29419 -11.91064 -11.83170 -11.70719 -11.60912 -11.26178 -11.23443 -11.18385 -11.10297 -10.91614 -10.87442 -10.73614 -10.49658 -10.43550 -10.14539 -9.75444 -9.46355 -9.09761 -8.66116 -6.16489 -4.17683 0.70320 3.06951 3.26897 3.34206 3.38574 4.14666 4.31659 4.32667 4.36137 4.42860 4.65045 4.97385 5.08755 5.14189 5.15543 5.22808 5.25935 5.32604 5.37525 5.43285 5.54544 5.57860 5.59951 5.64311 5.77549 5.79144 5.86336 5.94511 6.08091 6.11381 6.19362 6.25719 6.29346 6.82253 6.93751 7.09010 7.55142 8.36749 8.84613 9.43313 10.95923 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.029430 B = 0.004313 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.170899 B = 6491.025476 C = 7042.277666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.089 4.089 3 H 0.073 0.927 4 C -0.121 4.121 5 C -0.126 4.126 6 C -0.122 4.122 7 C -0.094 4.094 8 H 0.078 0.922 9 C 0.116 3.884 10 N -1.126 6.126 11 S 2.591 3.409 12 O -0.967 6.967 13 O -0.969 6.969 14 C -0.584 4.584 15 C -0.007 4.007 16 C -0.519 4.519 17 H 0.078 0.922 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.869 3.131 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.262 1.262 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.412 0.588 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.033 0.967 39 H 0.028 0.972 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.148 2.576 15.928 22.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.109 4.109 3 H 0.092 0.908 4 C -0.159 4.159 5 C -0.164 4.164 6 C -0.159 4.159 7 C -0.114 4.114 8 H 0.097 0.903 9 C -0.010 4.010 10 N -0.884 5.884 11 S 2.688 3.312 12 O -0.957 6.957 13 O -0.960 6.960 14 C -0.717 4.717 15 C -0.047 4.047 16 C -0.558 4.558 17 H 0.096 0.904 18 C -0.131 4.131 19 N -0.534 5.534 20 Si 0.696 3.304 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.186 1.186 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.245 0.755 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.051 0.949 39 H 0.046 0.954 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.933 1.607 15.751 21.764 hybrid contribution -0.018 -0.034 -0.513 0.515 sum 14.915 1.573 15.238 21.381 Atomic orbital electron populations 1.22077 0.94799 1.02584 1.02133 1.21737 0.96048 0.99165 0.93917 0.90822 1.22473 0.97425 0.98974 0.97017 1.22489 0.97628 0.99833 0.96414 1.22468 0.99530 0.98063 0.95865 1.21997 0.96197 0.97113 0.96069 0.90320 1.21689 0.96517 0.97889 0.84875 1.55732 1.25998 1.70315 1.36333 1.05513 0.75906 0.75867 0.73869 1.93542 1.80577 1.59143 1.62435 1.93555 1.66069 1.80555 1.55781 1.30293 1.15135 1.15111 1.11116 1.19409 0.94548 0.96353 0.94364 1.20854 1.07381 0.96691 1.30905 0.90433 1.24985 0.95088 0.97816 0.95220 1.69881 1.13533 1.35340 1.34637 0.86924 0.77853 0.85727 0.79943 1.19673 1.20755 1.18606 0.91813 0.92643 0.91806 0.91851 0.91291 0.91710 0.91661 0.90884 0.91676 0.91268 0.89966 0.75507 0.85556 0.85781 0.94917 0.95394 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 7.88 37.16 0.29 -1.02 16 2 C -0.09 -0.71 3.50 -89.50 -0.31 -1.02 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 4 C -0.12 -0.91 6.36 -25.07 -0.16 -1.07 16 5 C -0.13 -0.95 6.91 -24.74 -0.17 -1.12 16 6 C -0.12 -1.08 6.19 -25.07 -0.16 -1.24 16 7 C -0.09 -0.82 2.97 -89.50 -0.27 -1.09 16 8 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 9 C 0.12 1.24 4.24 -4.04 -0.02 1.23 16 10 N -1.13 -13.66 5.70 -10.61 -0.06 -13.72 16 11 S 2.59 43.53 5.46 -107.50 -0.59 42.95 16 12 O -0.97 -18.89 17.50 -57.54 -1.01 -19.89 16 13 O -0.97 -18.99 18.08 -57.54 -1.04 -20.04 16 14 C -0.58 -10.59 6.01 37.16 0.22 -10.37 16 15 C -0.01 -0.18 4.05 -27.88 -0.11 -0.29 16 16 C -0.52 -14.51 9.66 -34.44 -0.33 -14.84 16 17 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 19 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 20 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 24 H 0.06 0.56 6.86 -51.93 -0.36 0.21 16 25 H 0.05 0.42 8.14 -51.92 -0.42 -0.01 16 26 H 0.06 0.53 6.62 -51.93 -0.34 0.19 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.54 7.84 -51.93 -0.41 0.13 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.75 7.76 -51.93 -0.40 0.35 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.67 6.42 -51.93 -0.33 0.33 16 34 H 0.08 0.95 6.46 -51.92 -0.34 0.61 16 35 H 0.41 4.19 8.62 -34.48 -0.30 3.89 16 36 H 0.13 2.09 8.14 -51.93 -0.42 1.67 16 37 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 38 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 39 H 0.03 0.66 7.57 -51.93 -0.39 0.26 16 40 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 327.07 15.07 4.93 4.93 Total: -1.00 -34.01 327.07 -9.40 -43.41 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.63 Total: 0.66 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: -1.11 Total: -28.86 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.71 Total: -40.03 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -2.05 Total: -39.93 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Atomic # 16 Polarization: 43.53 SS G_CDS: -0.59 Total: 42.95 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.01 -9.40 -43.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359939236.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.093 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds