Wall clock time and date at job start Mon Mar 30 2020 02:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.02188 * 2 1 4 4 C 1.54266 * 110.07539 * 121.41853 * 2 1 3 5 5 C 1.54887 * 104.19946 * 142.91332 * 4 2 1 6 6 C 1.54888 * 102.74554 * 322.05787 * 5 4 2 7 7 C 1.53881 * 110.03026 * 238.60607 * 2 1 3 8 8 H 1.09001 * 110.03024 * 121.33712 * 7 2 1 9 9 C 1.52995 * 110.03030 * 359.95523 * 7 2 1 10 10 N 1.46500 * 109.46920 * 175.00089 * 9 7 2 11 11 S 1.65606 * 119.99960 * 165.00023 * 10 9 7 12 12 O 1.42098 * 104.27286 * 308.92504 * 11 10 9 13 13 O 1.42100 * 104.27468 * 181.06871 * 11 10 9 14 14 C 1.81397 * 104.44910 * 64.99739 * 11 10 9 15 15 C 1.53000 * 109.46664 * 180.02562 * 14 11 10 16 16 C 1.50708 * 109.46973 * 179.97438 * 15 14 11 17 17 H 1.07991 * 119.99789 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00008 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00089 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99938 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 269.99556 * 20 18 16 22 22 H 1.48503 * 109.47261 * 149.99737 * 20 18 16 23 23 H 1.48500 * 109.47454 * 29.99730 * 20 18 16 24 24 H 1.08997 * 109.47478 * 181.39620 * 1 2 3 25 25 H 1.09011 * 109.46682 * 301.39316 * 1 2 3 26 26 H 1.08999 * 109.47039 * 61.38776 * 1 2 3 27 27 H 1.09005 * 110.48544 * 261.59181 * 4 2 1 28 28 H 1.09000 * 110.48217 * 24.23220 * 4 2 1 29 29 H 1.09001 * 110.75679 * 80.37254 * 5 4 2 30 30 H 1.09001 * 110.75756 * 203.55965 * 5 4 2 31 31 H 1.08992 * 110.48869 * 279.25968 * 6 5 4 32 32 H 1.09007 * 110.48592 * 156.61910 * 6 5 4 33 33 H 1.08992 * 109.47394 * 54.99786 * 9 7 2 34 34 H 1.09010 * 109.46977 * 294.99660 * 9 7 2 35 35 H 0.96996 * 119.99803 * 344.99511 * 10 9 7 36 36 H 1.08996 * 109.47097 * 60.00372 * 14 11 10 37 37 H 1.08996 * 109.47033 * 299.99416 * 14 11 10 38 38 H 1.08994 * 109.48028 * 59.99941 * 15 14 11 39 39 H 1.09000 * 109.47206 * 299.99795 * 15 14 11 40 40 H 0.96997 * 119.99848 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0595 -0.7553 1.2365 5 6 3.3150 -1.4997 0.7181 6 6 2.8883 -1.9397 -0.7043 7 6 2.0570 -0.7531 -1.2341 8 1 2.6853 -0.0942 -1.8334 9 6 0.8861 -1.2670 -2.0740 10 7 1.3979 -1.8766 -3.3040 11 16 0.4125 -2.8393 -4.2231 12 8 -0.1240 -3.7755 -3.2984 13 8 1.2401 -3.2630 -5.2977 14 6 -0.8840 -1.7203 -4.8208 15 6 -1.8694 -2.5013 -5.6926 16 6 -2.9470 -1.5718 -6.1887 17 1 -2.9303 -0.5285 -5.9105 18 6 -3.9535 -2.0532 -6.9988 19 7 -4.8936 -1.2420 -7.4322 20 14 -3.9819 -3.8578 -7.4806 21 1 -3.2176 -4.0460 -8.7399 22 1 -5.3868 -4.2937 -7.6845 23 1 -3.3639 -4.6684 -6.4007 24 1 -0.3634 -1.0273 0.0250 25 1 -0.3633 0.5354 0.8773 26 1 -0.3633 0.4921 -0.9022 27 1 2.3307 -0.0533 2.0251 28 1 1.3159 -1.4663 1.5965 29 1 4.1719 -0.8275 0.6739 30 1 3.5365 -2.3649 1.3430 31 1 2.2787 -2.8420 -0.6578 32 1 3.7645 -2.1021 -1.3323 33 1 0.2280 -0.4358 -2.3270 34 1 0.3292 -2.0110 -1.5043 35 1 2.3138 -1.7162 -3.5800 36 1 -0.4319 -0.9217 -5.4089 37 1 -1.4134 -1.2905 -3.9705 38 1 -2.3215 -3.2997 -5.1043 39 1 -1.3404 -2.9315 -6.5429 40 1 -5.6019 -1.5809 -8.0017 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359939236.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:37 Heat of formation + Delta-G solvation = -126.787077 kcal Electronic energy + Delta-G solvation = -19925.644327 eV Core-core repulsion = 16865.283515 eV Total energy + Delta-G solvation = -3060.360812 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.05837 -38.14544 -37.02693 -35.88896 -35.70406 -33.46808 -32.26006 -30.10775 -27.87489 -25.94817 -25.18171 -23.18371 -21.58643 -20.43855 -19.81402 -19.33342 -18.29359 -17.54447 -17.03663 -16.76427 -16.36425 -16.03252 -15.47737 -15.25006 -15.11452 -14.82012 -14.47826 -13.85357 -13.77300 -13.37276 -13.22487 -13.10122 -13.06112 -13.02938 -12.93970 -12.89121 -12.23153 -11.96368 -11.86749 -11.82773 -11.70220 -11.53950 -11.52731 -11.38414 -11.33201 -11.09228 -10.84204 -10.23915 -8.36419 -6.42023 -0.68201 1.32189 1.34067 1.44187 1.84587 2.29763 2.77671 2.97686 3.26653 3.63167 3.69688 3.76957 3.91907 4.09527 4.29517 4.42786 4.45202 4.52754 4.54787 4.59162 4.63670 4.73020 4.77919 4.94803 4.98080 5.07568 5.09227 5.12669 5.14934 5.17749 5.32555 5.41416 5.43704 5.47834 5.54776 5.62198 6.16847 6.17454 6.64065 7.22448 8.79135 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.029430 B = 0.004313 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.170899 B = 6491.025476 C = 7042.277666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.087 4.087 3 H 0.086 0.914 4 C -0.122 4.122 5 C -0.123 4.123 6 C -0.127 4.127 7 C -0.090 4.090 8 H 0.093 0.907 9 C 0.106 3.894 10 N -1.107 6.107 11 S 2.623 3.377 12 O -0.993 6.993 13 O -0.995 6.995 14 C -0.589 4.589 15 C -0.018 4.018 16 C -0.527 4.527 17 H 0.050 0.950 18 C 0.014 3.986 19 N -0.940 5.940 20 Si 0.925 3.075 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.250 1.250 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.424 0.576 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.032 0.968 39 H 0.030 0.970 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.743 2.442 16.887 23.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.106 4.106 3 H 0.104 0.896 4 C -0.159 4.159 5 C -0.161 4.161 6 C -0.164 4.164 7 C -0.110 4.110 8 H 0.111 0.889 9 C -0.020 4.020 10 N -0.869 5.869 11 S 2.719 3.281 12 O -0.983 6.983 13 O -0.985 6.985 14 C -0.721 4.721 15 C -0.057 4.057 16 C -0.566 4.566 17 H 0.068 0.932 18 C -0.185 4.185 19 N -0.580 5.580 20 Si 0.747 3.253 21 H -0.186 1.186 22 H -0.199 1.199 23 H -0.173 1.173 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.261 0.739 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 16.535 1.477 16.706 23.551 hybrid contribution -0.480 0.108 -0.732 0.882 sum 16.055 1.585 15.973 22.703 Atomic orbital electron populations 1.22106 0.95318 1.02074 1.02458 1.21748 0.95600 0.99708 0.93567 0.89599 1.22483 0.97215 0.99047 0.97179 1.22484 0.97973 1.00124 0.95479 1.22499 0.99492 0.97430 0.97022 1.22015 0.95479 0.97286 0.96237 0.88907 1.21960 0.97735 0.98021 0.84248 1.55278 1.25856 1.69804 1.35982 1.04347 0.75227 0.75363 0.73198 1.93511 1.81302 1.60409 1.63051 1.93514 1.66488 1.81275 1.57272 1.30292 1.15088 1.15540 1.11155 1.19378 0.94723 0.96209 0.95410 1.21184 1.08570 0.96337 1.30514 0.93188 1.25867 0.94848 1.02329 0.95439 1.70006 1.14561 1.37507 1.35900 0.86031 0.78482 0.80504 0.80255 1.18561 1.19896 1.17330 0.92767 0.91936 0.91910 0.90687 0.92000 0.90639 0.91508 0.92675 0.91145 0.89921 0.90902 0.73922 0.84083 0.84228 0.94938 0.95136 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 7.88 71.98 0.57 -1.87 16 2 C -0.09 -1.17 3.50 -10.07 -0.04 -1.21 16 3 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 4 C -0.12 -1.57 6.36 31.67 0.20 -1.37 16 5 C -0.12 -1.60 6.91 31.88 0.22 -1.37 16 6 C -0.13 -2.02 6.19 31.67 0.20 -1.82 16 7 C -0.09 -1.36 2.97 -10.07 -0.03 -1.39 16 8 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 9 C 0.11 2.06 4.24 86.38 0.37 2.43 16 10 N -1.11 -24.63 5.70 -187.50 -1.07 -25.70 16 11 S 2.62 84.35 5.46 -56.49 -0.31 84.04 16 12 O -0.99 -37.69 17.50 -127.65 -2.23 -39.93 16 13 O -1.00 -37.54 18.08 -127.65 -2.31 -39.85 16 14 C -0.59 -20.72 6.01 71.98 0.43 -20.28 16 15 C -0.02 -0.85 4.05 29.85 0.12 -0.73 16 16 C -0.53 -29.73 9.66 25.60 0.25 -29.48 16 17 H 0.05 3.00 7.99 -2.92 -0.02 2.98 16 18 C 0.01 0.79 5.47 84.65 0.46 1.26 16 19 N -0.94 -57.76 13.96 21.45 0.30 -57.46 16 20 Si 0.92 43.91 27.47 68.60 1.88 45.79 16 21 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 24 H 0.05 0.91 6.86 -2.39 -0.02 0.89 16 25 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.06 0.94 6.62 -2.39 -0.02 0.92 16 27 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.06 0.88 7.84 -2.39 -0.02 0.86 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 31 H 0.05 1.08 7.76 -2.39 -0.02 1.06 16 32 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.08 1.42 6.42 -2.39 -0.02 1.40 16 34 H 0.07 1.60 6.46 -2.38 -0.02 1.58 16 35 H 0.42 7.59 8.62 -96.74 -0.83 6.75 16 36 H 0.14 4.48 8.14 -2.39 -0.02 4.46 16 37 H 0.14 4.39 8.14 -2.39 -0.02 4.37 16 38 H 0.03 1.51 7.20 -2.39 -0.02 1.49 16 39 H 0.03 1.40 7.57 -2.39 -0.02 1.38 16 40 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -72.52 327.07 -0.86 -73.38 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.13 Total: 15.55 kcal Atomic # 6 Polarization: -58.59 SS G_CDS: 2.75 Total: -55.84 kcal Atomic # 7 Polarization: -82.39 SS G_CDS: -0.77 Total: -83.16 kcal Atomic # 8 Polarization: -75.23 SS G_CDS: -4.54 Total: -79.77 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.79 kcal Atomic # 16 Polarization: 84.35 SS G_CDS: -0.31 Total: 84.04 kcal Total: -72.52 -0.86 -73.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359939236.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.405 kcal (2) G-P(sol) polarization free energy of solvation -72.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds