Wall clock time and date at job start Mon Mar 30 2020 02:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.43433 * 2 1 4 4 C 1.54885 * 110.59870 * 237.38461 * 2 1 3 5 5 C 1.54892 * 102.75093 * 203.32094 * 4 2 1 6 6 C 1.54262 * 104.19228 * 37.94326 * 5 4 2 7 7 H 1.09004 * 110.07643 * 95.69485 * 6 5 4 8 8 C 1.52997 * 110.03374 * 217.10438 * 6 5 4 9 9 N 1.46497 * 109.47242 * 292.16711 * 8 6 5 10 10 S 1.65599 * 120.00110 * 164.99451 * 9 8 6 11 11 O 1.42105 * 104.27797 * 181.07392 * 10 9 8 12 12 O 1.42101 * 104.27901 * 308.93100 * 10 9 8 13 13 C 1.81397 * 104.44825 * 65.00280 * 10 9 8 14 14 C 1.53009 * 109.47235 * 179.97438 * 13 10 9 15 15 C 1.50697 * 109.46948 * 179.97438 * 14 13 10 16 16 H 1.07997 * 120.00322 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99943 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99809 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00266 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46941 * 59.99879 * 19 17 15 21 21 H 1.48495 * 109.47084 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46812 * 300.00133 * 19 17 15 23 23 C 1.53881 * 106.60098 * 336.38771 * 6 5 4 24 24 H 1.09000 * 109.46934 * 297.45586 * 1 2 3 25 25 H 1.08996 * 109.47375 * 57.45278 * 1 2 3 26 26 H 1.09004 * 109.47361 * 177.45874 * 1 2 3 27 27 H 1.09007 * 110.75912 * 321.63908 * 4 2 1 28 28 H 1.08999 * 110.76005 * 84.82269 * 4 2 1 29 29 H 1.08997 * 110.48550 * 279.26375 * 5 4 2 30 30 H 1.08996 * 110.48504 * 156.61666 * 5 4 2 31 31 H 1.09002 * 109.47780 * 172.16289 * 8 6 5 32 32 H 1.09005 * 109.46944 * 52.16586 * 8 6 5 33 33 H 0.96999 * 119.99844 * 345.00176 * 9 8 6 34 34 H 1.09004 * 109.47032 * 299.99803 * 13 10 9 35 35 H 1.09000 * 109.47124 * 60.00075 * 13 10 9 36 36 H 1.08995 * 109.47216 * 300.00010 * 14 13 10 37 37 H 1.09000 * 109.46805 * 60.00123 * 14 13 10 38 38 H 0.97001 * 119.99986 * 179.97438 * 18 17 15 39 39 H 1.08999 * 110.02860 * 119.28693 * 23 6 5 40 40 H 1.08994 * 110.03405 * 240.71501 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0749 -0.7815 -1.2212 5 6 3.4938 -1.1946 -0.7573 6 6 3.3185 -1.5369 0.7366 7 1 3.1733 -2.6102 0.8601 8 6 4.5467 -1.0804 1.5265 9 7 5.7037 -1.8932 1.1432 10 16 7.2324 -1.3991 1.5451 11 8 8.0794 -2.4009 0.9989 12 8 7.2979 -0.0553 1.0878 13 6 7.2648 -1.4570 3.3578 14 6 8.6427 -1.0176 3.8575 15 6 8.6694 -1.0651 5.3635 16 1 7.7917 -1.3778 5.9096 17 6 9.8147 -0.7103 6.0442 18 7 10.8837 -0.3300 5.3792 19 14 9.8482 -0.7699 7.9110 20 1 9.5748 -2.1564 8.3669 21 1 11.1853 -0.3433 8.3959 22 1 8.8107 0.1434 8.4540 23 6 2.0699 -0.7773 1.2182 24 1 -0.3633 0.4738 0.9119 25 1 -0.3634 0.5528 -0.8662 26 1 -0.3634 -1.0267 -0.0456 27 1 1.4627 -1.6608 -1.4217 28 1 2.1247 -0.1388 -2.1002 29 1 4.1914 -0.3662 -0.8796 30 1 3.8368 -2.0685 -1.3111 31 1 4.3572 -1.1984 2.5934 32 1 4.7505 -0.0322 1.3076 33 1 5.5744 -2.7207 0.6540 34 1 6.5028 -0.7873 3.7564 35 1 7.0651 -2.4749 3.6925 36 1 9.4044 -1.6876 3.4590 37 1 8.8429 0.0003 3.5229 38 1 11.6894 -0.0800 5.8581 39 1 1.3185 -1.4820 1.5744 40 1 2.3390 -0.0835 2.0145 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360375832.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:30 Heat of formation + Delta-G solvation = -112.507055 kcal Electronic energy + Delta-G solvation = -19529.669317 eV Core-core repulsion = 16469.927733 eV Total energy + Delta-G solvation = -3059.741584 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.06355 -36.54843 -35.43391 -35.03490 -33.87943 -31.24083 -31.14170 -29.34165 -25.88030 -25.58408 -23.84119 -21.65352 -20.56183 -19.81802 -18.79448 -17.35999 -16.72046 -16.29545 -15.50631 -15.33272 -15.18521 -14.56835 -14.39902 -14.17019 -13.76462 -13.32846 -13.22796 -12.82705 -12.50096 -12.09104 -11.97894 -11.74577 -11.56460 -11.47180 -11.24006 -11.12717 -11.06003 -10.95338 -10.93881 -10.75197 -10.72491 -10.58181 -10.41731 -10.36277 -9.76626 -9.45168 -8.98673 -8.49463 -6.11741 -4.17425 0.83409 3.19548 3.27492 3.32268 3.34127 4.26123 4.30362 4.37431 4.40639 4.47825 4.74745 4.88734 5.06053 5.16947 5.23263 5.26447 5.33330 5.34482 5.42397 5.48728 5.53578 5.62316 5.67801 5.71402 5.75027 5.83690 5.88194 5.92221 5.98439 6.13810 6.21046 6.27544 6.50453 7.14308 7.31185 7.37735 7.81010 8.18434 8.85800 9.47203 10.99291 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.027349 B = 0.003746 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.553342 B = 7473.450414 C = 8167.009480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 H 0.075 0.925 4 C -0.121 4.121 5 C -0.122 4.122 6 C -0.097 4.097 7 H 0.078 0.922 8 C 0.120 3.880 9 N -1.127 6.127 10 S 2.594 3.406 11 O -0.969 6.969 12 O -0.968 6.968 13 C -0.590 4.590 14 C 0.028 3.972 15 C -0.521 4.521 16 H 0.061 0.939 17 C 0.058 3.942 18 N -0.891 5.891 19 Si 0.901 3.099 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.116 4.116 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.411 0.589 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.266 0.734 39 H 0.067 0.933 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.809 -1.989 -10.000 22.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.094 0.906 4 C -0.158 4.158 5 C -0.160 4.160 6 C -0.117 4.117 7 H 0.096 0.904 8 C -0.006 4.006 9 N -0.885 5.885 10 S 2.691 3.309 11 O -0.960 6.960 12 O -0.958 6.958 13 C -0.723 4.723 14 C -0.011 4.011 15 C -0.561 4.561 16 H 0.079 0.921 17 C -0.145 4.145 18 N -0.529 5.529 19 Si 0.728 3.272 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.155 4.155 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.244 0.756 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.932 -1.494 -10.533 21.716 hybrid contribution -0.303 -0.543 1.465 1.592 sum -19.235 -2.037 -9.068 21.362 Atomic orbital electron populations 1.21801 0.95148 1.01634 1.01542 1.21990 0.95291 0.99575 0.94963 0.90623 1.22575 0.96201 0.99634 0.97415 1.22461 0.97064 1.01711 0.94742 1.21961 0.93866 1.00488 0.95373 0.90374 1.21466 0.85251 0.95466 0.98413 1.55764 1.23812 1.35831 1.73049 1.05489 0.72247 0.74112 0.79037 1.93549 1.64589 1.60124 1.77708 1.93535 1.85148 1.37337 1.79739 1.30446 1.10404 1.10108 1.21393 1.18957 0.86180 0.97590 0.98386 1.20975 0.98586 1.46275 0.90250 0.92108 1.25072 0.95484 0.94940 0.98995 1.69947 1.02695 1.44274 1.35953 0.86523 0.77305 0.78554 0.84843 1.20087 1.21075 1.20078 1.22254 0.96328 0.98972 0.97900 0.92706 0.92844 0.92742 0.91631 0.91720 0.90821 0.91647 0.91814 0.90180 0.75570 0.86382 0.86152 0.94846 0.94828 0.92469 0.91419 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.12 37.16 0.34 -0.61 16 2 C -0.10 -0.77 3.45 -88.97 -0.31 -1.08 16 3 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 4 C -0.12 -0.95 6.33 -24.74 -0.16 -1.10 16 5 C -0.12 -1.12 6.19 -25.07 -0.16 -1.28 16 6 C -0.10 -0.86 2.97 -89.50 -0.27 -1.13 16 7 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 8 C 0.12 1.33 5.19 -4.04 -0.02 1.31 16 9 N -1.13 -14.34 5.70 -10.61 -0.06 -14.40 16 10 S 2.59 46.21 5.46 -107.50 -0.59 45.62 16 11 O -0.97 -20.22 18.08 -57.54 -1.04 -21.26 16 12 O -0.97 -20.10 17.50 -57.54 -1.01 -21.10 16 13 C -0.59 -11.26 6.01 37.16 0.22 -11.04 16 14 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 15 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 19 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 C -0.12 -0.92 6.03 -25.61 -0.15 -1.08 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.34 8.12 -51.93 -0.42 -0.08 16 27 H 0.06 0.48 8.05 -51.93 -0.42 0.06 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.78 7.76 -51.93 -0.40 0.38 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.95 7.56 -51.93 -0.39 0.56 16 33 H 0.41 4.42 8.62 -34.47 -0.30 4.13 16 34 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 35 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 36 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 39 H 0.07 0.49 7.84 -51.93 -0.41 0.08 16 40 H 0.07 0.55 7.67 -51.93 -0.40 0.15 16 LS Contribution 336.95 15.07 5.08 5.08 Total: -1.00 -34.24 336.95 -9.88 -44.12 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.93 Total: 0.28 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: -1.05 Total: -28.68 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.68 Total: -40.28 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -2.05 Total: -42.36 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 46.21 SS G_CDS: -0.59 Total: 45.62 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.24 -9.88 -44.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360375832.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.385 kcal (2) G-P(sol) polarization free energy of solvation -34.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds