Wall clock time and date at job start Mon Mar 30 2020 02:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.43433 * 2 1 4 4 C 1.54885 * 110.59870 * 237.38461 * 2 1 3 5 5 C 1.54892 * 102.75093 * 203.32094 * 4 2 1 6 6 C 1.54262 * 104.19228 * 37.94326 * 5 4 2 7 7 H 1.09004 * 110.07643 * 95.69485 * 6 5 4 8 8 C 1.52997 * 110.03374 * 217.10438 * 6 5 4 9 9 N 1.46497 * 109.47242 * 292.16711 * 8 6 5 10 10 S 1.65599 * 120.00110 * 164.99451 * 9 8 6 11 11 O 1.42105 * 104.27797 * 181.07392 * 10 9 8 12 12 O 1.42101 * 104.27901 * 308.93100 * 10 9 8 13 13 C 1.81397 * 104.44825 * 65.00280 * 10 9 8 14 14 C 1.53009 * 109.47235 * 179.97438 * 13 10 9 15 15 C 1.50697 * 109.46948 * 179.97438 * 14 13 10 16 16 H 1.07997 * 120.00322 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99943 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99809 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00266 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46941 * 59.99879 * 19 17 15 21 21 H 1.48495 * 109.47084 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46812 * 300.00133 * 19 17 15 23 23 C 1.53881 * 106.60098 * 336.38771 * 6 5 4 24 24 H 1.09000 * 109.46934 * 297.45586 * 1 2 3 25 25 H 1.08996 * 109.47375 * 57.45278 * 1 2 3 26 26 H 1.09004 * 109.47361 * 177.45874 * 1 2 3 27 27 H 1.09007 * 110.75912 * 321.63908 * 4 2 1 28 28 H 1.08999 * 110.76005 * 84.82269 * 4 2 1 29 29 H 1.08997 * 110.48550 * 279.26375 * 5 4 2 30 30 H 1.08996 * 110.48504 * 156.61666 * 5 4 2 31 31 H 1.09002 * 109.47780 * 172.16289 * 8 6 5 32 32 H 1.09005 * 109.46944 * 52.16586 * 8 6 5 33 33 H 0.96999 * 119.99844 * 345.00176 * 9 8 6 34 34 H 1.09004 * 109.47032 * 299.99803 * 13 10 9 35 35 H 1.09000 * 109.47124 * 60.00075 * 13 10 9 36 36 H 1.08995 * 109.47216 * 300.00010 * 14 13 10 37 37 H 1.09000 * 109.46805 * 60.00123 * 14 13 10 38 38 H 0.97001 * 119.99986 * 179.97438 * 18 17 15 39 39 H 1.08999 * 110.02860 * 119.28693 * 23 6 5 40 40 H 1.08994 * 110.03405 * 240.71501 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0749 -0.7815 -1.2212 5 6 3.4938 -1.1946 -0.7573 6 6 3.3185 -1.5369 0.7366 7 1 3.1733 -2.6102 0.8601 8 6 4.5467 -1.0804 1.5265 9 7 5.7037 -1.8932 1.1432 10 16 7.2324 -1.3991 1.5451 11 8 8.0794 -2.4009 0.9989 12 8 7.2979 -0.0553 1.0878 13 6 7.2648 -1.4570 3.3578 14 6 8.6427 -1.0176 3.8575 15 6 8.6694 -1.0651 5.3635 16 1 7.7917 -1.3778 5.9096 17 6 9.8147 -0.7103 6.0442 18 7 10.8837 -0.3300 5.3792 19 14 9.8482 -0.7699 7.9110 20 1 9.5748 -2.1564 8.3669 21 1 11.1853 -0.3433 8.3959 22 1 8.8107 0.1434 8.4540 23 6 2.0699 -0.7773 1.2182 24 1 -0.3633 0.4738 0.9119 25 1 -0.3634 0.5528 -0.8662 26 1 -0.3634 -1.0267 -0.0456 27 1 1.4627 -1.6608 -1.4217 28 1 2.1247 -0.1388 -2.1002 29 1 4.1914 -0.3662 -0.8796 30 1 3.8368 -2.0685 -1.3111 31 1 4.3572 -1.1984 2.5934 32 1 4.7505 -0.0322 1.3076 33 1 5.5744 -2.7207 0.6540 34 1 6.5028 -0.7873 3.7564 35 1 7.0651 -2.4749 3.6925 36 1 9.4044 -1.6876 3.4590 37 1 8.8429 0.0003 3.5229 38 1 11.6894 -0.0800 5.8581 39 1 1.3185 -1.4820 1.5744 40 1 2.3390 -0.0835 2.0145 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360375832.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:29 Heat of formation + Delta-G solvation = -136.508450 kcal Electronic energy + Delta-G solvation = -19530.710096 eV Core-core repulsion = 16469.927733 eV Total energy + Delta-G solvation = -3060.782362 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.75773 -38.12970 -37.00322 -36.01060 -35.88773 -33.11846 -31.96028 -30.03564 -27.58581 -26.58605 -24.60484 -23.58143 -21.24055 -20.61783 -20.08895 -19.03514 -18.17644 -17.62093 -17.03020 -16.53081 -16.44312 -16.01365 -15.54295 -15.11115 -14.88019 -14.46619 -14.38036 -13.87057 -13.72450 -13.56591 -13.19702 -13.16218 -13.09235 -12.89881 -12.79070 -12.68635 -12.22513 -12.15813 -11.97800 -11.81432 -11.72719 -11.58539 -11.45211 -11.37086 -11.26645 -11.11547 -10.63685 -10.27120 -8.25710 -6.40037 -0.64943 1.41120 1.44763 1.52933 1.89761 2.38498 2.83012 3.07600 3.29098 3.66893 3.68184 3.81286 4.02117 4.14464 4.22557 4.36815 4.48196 4.57787 4.64369 4.67856 4.76108 4.79113 4.80248 4.88607 5.01410 5.10360 5.15121 5.21862 5.23000 5.28125 5.28925 5.40022 5.42976 5.57668 5.62885 5.68540 6.06436 6.17997 6.73748 7.30221 8.86439 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.027349 B = 0.003746 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.553342 B = 7473.450414 C = 8167.009480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 H 0.066 0.934 4 C -0.117 4.117 5 C -0.128 4.128 6 C -0.092 4.092 7 H 0.093 0.907 8 C 0.109 3.891 9 N -1.106 6.106 10 S 2.621 3.379 11 O -1.002 7.002 12 O -1.000 7.000 13 C -0.588 4.588 14 C 0.019 3.981 15 C -0.541 4.541 16 H 0.077 0.923 17 C -0.005 4.005 18 N -0.935 5.935 19 Si 0.975 3.025 20 H -0.263 1.263 21 H -0.285 1.285 22 H -0.262 1.262 23 C -0.115 4.115 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.424 0.576 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.005 0.995 37 H 0.006 0.994 38 H 0.267 0.733 39 H 0.080 0.920 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.312 -2.901 -8.968 24.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.085 0.915 4 C -0.155 4.155 5 C -0.166 4.166 6 C -0.112 4.112 7 H 0.112 0.888 8 C -0.017 4.017 9 N -0.868 5.868 10 S 2.717 3.283 11 O -0.992 6.992 12 O -0.989 6.989 13 C -0.720 4.720 14 C -0.020 4.020 15 C -0.580 4.580 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.575 5.575 19 Si 0.798 3.202 20 H -0.187 1.187 21 H -0.210 1.210 22 H -0.187 1.187 23 C -0.154 4.154 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.261 0.739 34 H 0.160 0.840 35 H 0.161 0.839 36 H 0.024 0.976 37 H 0.025 0.975 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.446 -2.418 -9.503 23.582 hybrid contribution 0.421 -0.250 1.063 1.171 sum -21.026 -2.668 -8.439 22.813 Atomic orbital electron populations 1.21775 0.94142 1.02107 1.01814 1.22005 0.96135 0.99057 0.94866 0.91541 1.22562 0.95410 1.00041 0.97470 1.22496 0.97553 1.01187 0.95356 1.21965 0.93091 1.01486 0.94622 0.88834 1.21780 0.85096 0.94662 1.00119 1.55241 1.22383 1.36572 1.72626 1.04387 0.72923 0.72898 0.78055 1.93498 1.66740 1.60867 1.78098 1.93495 1.86140 1.39278 1.80018 1.30335 1.07027 1.11860 1.22785 1.18823 0.89411 0.95631 0.98097 1.21512 0.99212 1.45776 0.91480 0.90509 1.26142 0.95056 0.94407 1.04714 1.70102 1.03525 1.45587 1.38253 0.85349 0.77512 0.79275 0.78027 1.18749 1.21036 1.18677 1.22271 0.96033 0.99156 0.97902 0.92456 0.92624 0.92132 0.90602 0.91767 0.92808 0.91231 0.89787 0.91347 0.73938 0.83962 0.83865 0.97617 0.97542 0.92393 0.90099 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.12 71.98 0.66 -0.90 16 2 C -0.10 -1.39 3.45 -9.72 -0.03 -1.42 16 3 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 4 C -0.12 -1.63 6.33 31.88 0.20 -1.43 16 5 C -0.13 -2.17 6.19 31.67 0.20 -1.97 16 6 C -0.09 -1.41 2.97 -10.07 -0.03 -1.44 16 7 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 8 C 0.11 2.18 5.19 86.38 0.45 2.63 16 9 N -1.11 -26.29 5.70 -187.49 -1.07 -27.36 16 10 S 2.62 92.86 5.46 -56.49 -0.31 92.55 16 11 O -1.00 -42.05 18.08 -127.65 -2.31 -44.36 16 12 O -1.00 -42.08 17.50 -127.65 -2.23 -44.31 16 13 C -0.59 -21.94 6.01 71.99 0.43 -21.50 16 14 C 0.02 1.01 4.98 29.85 0.15 1.16 16 15 C -0.54 -30.01 9.11 25.60 0.23 -29.78 16 16 H 0.08 3.90 7.74 -2.91 -0.02 3.87 16 17 C 0.00 -0.28 5.46 84.65 0.46 0.19 16 18 N -0.94 -57.24 13.29 21.45 0.28 -56.95 16 19 Si 0.98 43.21 29.54 68.60 2.03 45.24 16 20 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 23 C -0.12 -1.54 6.03 31.32 0.19 -1.35 16 24 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 0.60 8.12 -2.38 -0.02 0.58 16 27 H 0.08 0.91 8.05 -2.38 -0.02 0.89 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 1.12 7.76 -2.39 -0.02 1.10 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 1.56 7.56 -2.38 -0.02 1.54 16 33 H 0.42 8.22 8.62 -96.75 -0.83 7.38 16 34 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 35 H 0.14 4.65 8.14 -2.39 -0.02 4.63 16 36 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 39 H 0.08 0.90 7.84 -2.39 -0.02 0.88 16 40 H 0.07 0.94 7.67 -2.39 -0.02 0.93 16 Total: -1.00 -74.72 336.95 -0.53 -75.25 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.17 Total: 15.78 kcal Atomic # 6 Polarization: -58.73 SS G_CDS: 2.90 Total: -55.83 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -0.78 Total: -84.31 kcal Atomic # 8 Polarization: -84.13 SS G_CDS: -4.54 Total: -88.68 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 92.86 SS G_CDS: -0.31 Total: 92.55 kcal Total: -74.72 -0.53 -75.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360375832.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.255 kcal (2) G-P(sol) polarization free energy of solvation -74.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds