Wall clock time and date at job start Mon Mar 30 2020 02:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 110.05079 * 2 1 4 4 C 1.54261 * 110.03602 * 121.42210 * 2 1 3 5 5 C 1.55031 * 104.27828 * 142.79938 * 4 2 1 6 6 C 1.54879 * 102.68671 * 322.23550 * 5 4 2 7 7 H 1.08998 * 110.48938 * 279.02895 * 6 5 4 8 8 C 1.53000 * 110.48935 * 156.51554 * 6 5 4 9 9 N 1.46499 * 109.46840 * 68.23982 * 8 6 5 10 10 S 1.65599 * 120.00012 * 165.00017 * 9 8 6 11 11 O 1.42099 * 104.27938 * 181.07373 * 10 9 8 12 12 O 1.42106 * 104.27874 * 308.93199 * 10 9 8 13 13 C 1.81401 * 104.44946 * 65.00106 * 10 9 8 14 14 C 1.53003 * 109.47478 * 180.02562 * 13 10 9 15 15 C 1.50701 * 109.47050 * 180.02562 * 14 13 10 16 16 H 1.07998 * 120.00106 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99447 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00116 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99543 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47421 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47078 * 120.00202 * 19 17 15 22 22 H 1.48496 * 109.47300 * 239.99642 * 19 17 15 23 23 C 1.53876 * 110.02825 * 238.59136 * 2 1 3 24 24 H 1.08994 * 109.46825 * 181.41280 * 1 2 3 25 25 H 1.09003 * 109.46652 * 301.40808 * 1 2 3 26 26 H 1.08999 * 109.47425 * 61.40733 * 1 2 3 27 27 H 1.09004 * 110.48538 * 261.57264 * 4 2 1 28 28 H 1.08997 * 110.48662 * 24.08316 * 4 2 1 29 29 H 1.09000 * 110.87363 * 203.90034 * 5 4 2 30 30 H 1.09006 * 110.69362 * 80.48948 * 5 4 2 31 31 H 1.09002 * 109.47398 * 188.24309 * 8 6 5 32 32 H 1.09001 * 109.47194 * 308.24489 * 8 6 5 33 33 H 0.97001 * 120.00191 * 345.00817 * 9 8 6 34 34 H 1.09006 * 109.47313 * 300.00191 * 13 10 9 35 35 H 1.09007 * 109.46876 * 60.00312 * 13 10 9 36 36 H 1.08999 * 109.46623 * 300.00428 * 14 13 10 37 37 H 1.08997 * 109.46812 * 60.00211 * 14 13 10 38 38 H 0.97001 * 119.99623 * 180.02562 * 18 17 15 39 39 H 1.09003 * 110.03331 * 121.42826 * 23 2 1 40 40 H 1.08996 * 110.07577 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0240 0.0000 4 6 2.0585 -0.7555 1.2367 5 6 3.3138 -1.5042 0.7198 6 6 2.8875 -1.9405 -0.7038 7 1 2.2778 -2.8430 -0.6597 8 6 4.1174 -2.1693 -1.5847 9 7 4.8481 -3.3458 -1.1071 10 16 5.9966 -4.0534 -2.0674 11 8 6.4633 -5.1556 -1.3016 12 8 5.3394 -4.2517 -3.3117 13 6 7.2927 -2.7940 -2.2258 14 6 8.4244 -3.3342 -3.1023 15 6 9.5013 -2.2882 -3.2333 16 1 9.3895 -1.3334 -2.7410 17 6 10.6289 -2.5497 -3.9825 18 7 10.7643 -3.7118 -4.5832 19 14 11.9634 -1.2529 -4.1454 20 1 11.5728 -0.0417 -3.3802 21 1 13.2407 -1.7868 -3.6080 22 1 12.1381 -0.8995 -5.5771 23 6 2.0570 -0.7534 -1.2339 24 1 -0.3633 -1.0273 0.0253 25 1 -0.3633 0.5356 0.8771 26 1 -0.3634 0.4918 -0.9023 27 1 2.3298 -0.0537 2.0254 28 1 1.3135 -1.4644 1.5979 29 1 3.5312 -2.3730 1.3412 30 1 4.1721 -0.8336 0.6775 31 1 3.8012 -2.3315 -2.6152 32 1 4.7662 -1.2947 -1.5371 33 1 4.6590 -3.7104 -0.2283 34 1 6.8745 -1.8979 -2.6844 35 1 7.6831 -2.5484 -1.2382 36 1 8.8426 -4.2304 -2.6441 37 1 8.0337 -3.5795 -4.0898 38 1 11.5577 -3.8959 -5.1100 39 1 2.6866 -0.0951 -1.8326 40 1 1.2233 -1.1189 -1.8334 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360375836.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:35 Heat of formation + Delta-G solvation = -112.863795 kcal Electronic energy + Delta-G solvation = -19510.399077 eV Core-core repulsion = 16450.642024 eV Total energy + Delta-G solvation = -3059.757053 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.07280 -36.55362 -35.44026 -35.07100 -33.88041 -31.20745 -31.14511 -29.37409 -25.91454 -25.58791 -23.88151 -21.66096 -20.56568 -19.79680 -18.77252 -17.37518 -16.77209 -16.30099 -15.60596 -15.31244 -15.21910 -14.57946 -14.44963 -13.90756 -13.65150 -13.44304 -13.31003 -12.94622 -12.52527 -12.29111 -11.92134 -11.73369 -11.56316 -11.48663 -11.20360 -11.09121 -11.00221 -10.96315 -10.94146 -10.87141 -10.69748 -10.62378 -10.38382 -10.37441 -9.77398 -9.44515 -8.98864 -8.50255 -6.12123 -4.17550 0.83417 3.19209 3.25447 3.32702 3.36124 4.23244 4.32455 4.35933 4.39667 4.44543 4.73481 4.92737 5.02705 5.11816 5.23168 5.23637 5.24466 5.32521 5.38995 5.49314 5.55570 5.60496 5.66451 5.71689 5.75439 5.82322 5.85567 5.88797 5.96794 6.07577 6.20458 6.24692 6.50604 7.14179 7.31484 7.37726 7.81184 8.18312 8.86187 9.47221 10.98983 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.024202 B = 0.003812 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.643832 B = 7343.320535 C = 8011.342163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.071 0.929 4 C -0.121 4.121 5 C -0.123 4.123 6 C -0.098 4.098 7 H 0.082 0.918 8 C 0.121 3.879 9 N -1.127 6.127 10 S 2.594 3.406 11 O -0.969 6.969 12 O -0.968 6.968 13 C -0.589 4.589 14 C 0.027 3.973 15 C -0.520 4.520 16 H 0.062 0.938 17 C 0.057 3.943 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.117 4.117 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.411 0.589 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.033 0.967 37 H 0.034 0.966 38 H 0.264 0.736 39 H 0.069 0.931 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.462 7.337 10.421 22.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.089 0.911 4 C -0.158 4.158 5 C -0.160 4.160 6 C -0.118 4.118 7 H 0.100 0.900 8 C -0.005 4.005 9 N -0.885 5.885 10 S 2.691 3.309 11 O -0.960 6.960 12 O -0.958 6.958 13 C -0.723 4.723 14 C -0.012 4.012 15 C -0.559 4.559 16 H 0.080 0.920 17 C -0.145 4.145 18 N -0.529 5.529 19 Si 0.727 3.273 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.155 4.155 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.244 0.756 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.409 6.420 9.753 21.800 hybrid contribution 0.930 1.166 0.405 1.545 sum -17.480 7.586 10.159 21.594 Atomic orbital electron populations 1.21892 0.95168 1.01728 1.01445 1.21741 0.95540 0.99479 0.94854 0.91057 1.22467 0.97369 0.98892 0.97102 1.22627 0.97886 1.00050 0.95485 1.22186 0.95691 0.98938 0.94974 0.90003 1.21359 0.93120 0.87407 0.98631 1.55764 1.56132 1.43838 1.32738 1.05494 0.75403 0.76316 0.73680 1.93548 1.81741 1.49919 1.70759 1.93536 1.72957 1.85126 1.44182 1.30441 1.15496 1.16097 1.10252 1.18969 0.90821 0.97667 0.93737 1.21049 1.02778 1.00415 1.31662 0.92004 1.25076 0.98429 0.95726 0.95313 1.69967 1.28576 1.22025 1.32282 0.86413 0.81492 0.81434 0.77940 1.19655 1.20813 1.20799 1.22262 0.99397 0.96470 0.97403 0.92626 0.92936 0.92746 0.91827 0.91632 0.91423 0.90915 0.90256 0.91686 0.75572 0.86376 0.86139 0.94838 0.94814 0.92590 0.91209 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.85 37.16 0.33 -0.61 16 2 C -0.10 -0.71 3.50 -89.50 -0.31 -1.02 16 3 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 4 C -0.12 -0.88 6.36 -25.00 -0.16 -1.04 16 5 C -0.12 -1.00 5.95 -24.67 -0.15 -1.15 16 6 C -0.10 -0.87 2.97 -88.97 -0.26 -1.14 16 7 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 8 C 0.12 1.34 5.41 -4.04 -0.02 1.31 16 9 N -1.13 -14.40 5.81 -10.61 -0.06 -14.46 16 10 S 2.59 46.24 5.46 -107.50 -0.59 45.65 16 11 O -0.97 -20.22 18.08 -57.54 -1.04 -21.26 16 12 O -0.97 -20.19 17.50 -57.54 -1.01 -21.20 16 13 C -0.59 -11.21 6.01 37.16 0.22 -10.99 16 14 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 15 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 19 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 23 C -0.12 -0.93 6.03 -25.61 -0.15 -1.09 16 24 H 0.05 0.36 8.12 -51.93 -0.42 -0.06 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.46 7.83 -51.93 -0.41 0.05 16 29 H 0.07 0.53 8.01 -51.93 -0.42 0.11 16 30 H 0.07 0.61 8.00 -51.93 -0.42 0.19 16 31 H 0.08 0.93 7.69 -51.93 -0.40 0.53 16 32 H 0.06 0.64 8.06 -51.93 -0.42 0.22 16 33 H 0.41 4.47 8.20 -34.47 -0.28 4.18 16 34 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 35 H 0.12 2.07 8.14 -51.92 -0.42 1.64 16 36 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.07 0.55 7.84 -51.93 -0.41 0.14 16 40 H 0.07 0.53 7.67 -51.93 -0.40 0.13 16 LS Contribution 336.37 15.07 5.07 5.07 Total: -1.00 -34.31 336.37 -9.88 -44.19 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.91 Total: -0.01 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: -1.06 Total: -28.36 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.67 Total: -40.30 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -2.05 Total: -42.46 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 46.24 SS G_CDS: -0.59 Total: 45.65 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.31 -9.88 -44.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360375836.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.672 kcal (2) G-P(sol) polarization free energy of solvation -34.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds