Wall clock time and date at job start Mon Mar 30 2020 02:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 110.05079 * 2 1 4 4 C 1.54261 * 110.03602 * 121.42210 * 2 1 3 5 5 C 1.55031 * 104.27828 * 142.79938 * 4 2 1 6 6 C 1.54879 * 102.68671 * 322.23550 * 5 4 2 7 7 H 1.08998 * 110.48938 * 279.02895 * 6 5 4 8 8 C 1.53000 * 110.48935 * 156.51554 * 6 5 4 9 9 N 1.46499 * 109.46840 * 68.23982 * 8 6 5 10 10 S 1.65599 * 120.00012 * 165.00017 * 9 8 6 11 11 O 1.42099 * 104.27938 * 181.07373 * 10 9 8 12 12 O 1.42106 * 104.27874 * 308.93199 * 10 9 8 13 13 C 1.81401 * 104.44946 * 65.00106 * 10 9 8 14 14 C 1.53003 * 109.47478 * 180.02562 * 13 10 9 15 15 C 1.50701 * 109.47050 * 180.02562 * 14 13 10 16 16 H 1.07998 * 120.00106 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99447 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00116 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99543 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47421 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47078 * 120.00202 * 19 17 15 22 22 H 1.48496 * 109.47300 * 239.99642 * 19 17 15 23 23 C 1.53876 * 110.02825 * 238.59136 * 2 1 3 24 24 H 1.08994 * 109.46825 * 181.41280 * 1 2 3 25 25 H 1.09003 * 109.46652 * 301.40808 * 1 2 3 26 26 H 1.08999 * 109.47425 * 61.40733 * 1 2 3 27 27 H 1.09004 * 110.48538 * 261.57264 * 4 2 1 28 28 H 1.08997 * 110.48662 * 24.08316 * 4 2 1 29 29 H 1.09000 * 110.87363 * 203.90034 * 5 4 2 30 30 H 1.09006 * 110.69362 * 80.48948 * 5 4 2 31 31 H 1.09002 * 109.47398 * 188.24309 * 8 6 5 32 32 H 1.09001 * 109.47194 * 308.24489 * 8 6 5 33 33 H 0.97001 * 120.00191 * 345.00817 * 9 8 6 34 34 H 1.09006 * 109.47313 * 300.00191 * 13 10 9 35 35 H 1.09007 * 109.46876 * 60.00312 * 13 10 9 36 36 H 1.08999 * 109.46623 * 300.00428 * 14 13 10 37 37 H 1.08997 * 109.46812 * 60.00211 * 14 13 10 38 38 H 0.97001 * 119.99623 * 180.02562 * 18 17 15 39 39 H 1.09003 * 110.03331 * 121.42826 * 23 2 1 40 40 H 1.08996 * 110.07577 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0240 0.0000 4 6 2.0585 -0.7555 1.2367 5 6 3.3138 -1.5042 0.7198 6 6 2.8875 -1.9405 -0.7038 7 1 2.2778 -2.8430 -0.6597 8 6 4.1174 -2.1693 -1.5847 9 7 4.8481 -3.3458 -1.1071 10 16 5.9966 -4.0534 -2.0674 11 8 6.4633 -5.1556 -1.3016 12 8 5.3394 -4.2517 -3.3117 13 6 7.2927 -2.7940 -2.2258 14 6 8.4244 -3.3342 -3.1023 15 6 9.5013 -2.2882 -3.2333 16 1 9.3895 -1.3334 -2.7410 17 6 10.6289 -2.5497 -3.9825 18 7 10.7643 -3.7118 -4.5832 19 14 11.9634 -1.2529 -4.1454 20 1 11.5728 -0.0417 -3.3802 21 1 13.2407 -1.7868 -3.6080 22 1 12.1381 -0.8995 -5.5771 23 6 2.0570 -0.7534 -1.2339 24 1 -0.3633 -1.0273 0.0253 25 1 -0.3633 0.5356 0.8771 26 1 -0.3634 0.4918 -0.9023 27 1 2.3298 -0.0537 2.0254 28 1 1.3135 -1.4644 1.5979 29 1 3.5312 -2.3730 1.3412 30 1 4.1721 -0.8336 0.6775 31 1 3.8012 -2.3315 -2.6152 32 1 4.7662 -1.2947 -1.5371 33 1 4.6590 -3.7104 -0.2283 34 1 6.8745 -1.8979 -2.6844 35 1 7.6831 -2.5484 -1.2382 36 1 8.8426 -4.2304 -2.6441 37 1 8.0337 -3.5795 -4.0898 38 1 11.5577 -3.8959 -5.1100 39 1 2.6866 -0.0951 -1.8326 40 1 1.2233 -1.1189 -1.8334 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360375836.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:35 Heat of formation + Delta-G solvation = -136.816833 kcal Electronic energy + Delta-G solvation = -19511.437759 eV Core-core repulsion = 16450.642024 eV Total energy + Delta-G solvation = -3060.795735 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.73630 -38.13392 -37.00493 -36.04532 -35.88544 -33.11459 -31.91340 -30.02961 -27.58471 -26.61616 -24.61103 -23.58377 -21.21879 -20.59086 -20.03506 -19.03451 -18.22162 -17.63001 -17.03772 -16.52353 -16.44468 -16.09509 -15.54368 -15.03920 -14.76470 -14.44373 -14.23416 -13.97104 -13.79841 -13.69484 -13.21294 -13.12387 -13.06385 -12.94527 -12.85281 -12.75959 -12.24514 -12.10519 -11.86544 -11.76616 -11.63916 -11.53720 -11.47292 -11.44509 -11.23177 -11.09961 -10.65243 -10.30287 -8.25794 -6.39726 -0.64802 1.41438 1.41987 1.55368 1.89405 2.38410 2.83170 3.07818 3.29062 3.65694 3.69900 3.84464 4.01834 4.15055 4.26055 4.31309 4.46337 4.58275 4.64845 4.66106 4.77357 4.80407 4.82541 4.89887 5.01577 5.09966 5.14984 5.21554 5.26434 5.28664 5.29636 5.38478 5.44725 5.56360 5.64852 5.69185 6.06781 6.16831 6.74485 7.30560 8.86758 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.024202 B = 0.003812 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.643832 B = 7343.320535 C = 8011.342163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 H 0.073 0.927 4 C -0.119 4.119 5 C -0.125 4.125 6 C -0.094 4.094 7 H 0.080 0.920 8 C 0.110 3.890 9 N -1.107 6.107 10 S 2.621 3.379 11 O -1.002 7.002 12 O -1.000 7.000 13 C -0.587 4.587 14 C 0.019 3.981 15 C -0.538 4.538 16 H 0.077 0.923 17 C -0.005 4.005 18 N -0.935 5.935 19 Si 0.975 3.025 20 H -0.255 1.255 21 H -0.279 1.279 22 H -0.278 1.278 23 C -0.118 4.118 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.424 0.576 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.006 0.994 37 H 0.007 0.993 38 H 0.267 0.733 39 H 0.071 0.929 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.110 9.490 11.673 24.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.092 0.908 4 C -0.156 4.156 5 C -0.162 4.162 6 C -0.114 4.114 7 H 0.099 0.901 8 C -0.015 4.015 9 N -0.869 5.869 10 S 2.718 3.282 11 O -0.992 6.992 12 O -0.990 6.990 13 C -0.719 4.719 14 C -0.020 4.020 15 C -0.577 4.577 16 H 0.095 0.905 17 C -0.204 4.204 18 N -0.575 5.575 19 Si 0.799 3.201 20 H -0.178 1.178 21 H -0.205 1.205 22 H -0.204 1.204 23 C -0.156 4.156 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.260 0.740 34 H 0.160 0.840 35 H 0.161 0.839 36 H 0.024 0.976 37 H 0.025 0.975 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.063 8.579 11.022 23.632 hybrid contribution 1.042 0.493 0.039 1.153 sum -18.021 9.071 11.061 23.008 Atomic orbital electron populations 1.21880 0.94674 1.01760 1.01817 1.21744 0.95968 0.99442 0.94401 0.90825 1.22460 0.96978 0.98965 0.97223 1.22659 0.98328 1.00344 0.94898 1.22160 0.94730 0.99393 0.95158 0.90116 1.21667 0.94223 0.86873 0.98771 1.55250 1.54514 1.44362 1.32744 1.04384 0.75240 0.75524 0.73077 1.93497 1.82634 1.51726 1.71324 1.93495 1.73558 1.85575 1.46328 1.30329 1.14045 1.17279 1.10281 1.18835 0.92829 0.96818 0.93547 1.21563 1.03381 1.01285 1.31457 0.90534 1.26134 1.01304 0.98011 0.94910 1.70113 1.29589 1.24411 1.33355 0.85249 0.77941 0.78825 0.78133 1.17844 1.20452 1.20383 1.22285 0.99343 0.96147 0.97847 0.92776 0.92387 0.92587 0.91232 0.91417 0.91057 0.90869 0.91035 0.89934 0.74008 0.83957 0.83874 0.97586 0.97490 0.92415 0.91031 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.85 71.98 0.64 -0.95 16 2 C -0.10 -1.19 3.50 -10.07 -0.04 -1.22 16 3 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 4 C -0.12 -1.44 6.36 31.72 0.20 -1.24 16 5 C -0.12 -1.72 5.95 31.93 0.19 -1.53 16 6 C -0.09 -1.48 2.97 -9.72 -0.03 -1.51 16 7 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 8 C 0.11 2.21 5.41 86.38 0.47 2.67 16 9 N -1.11 -26.38 5.81 -187.49 -1.09 -27.47 16 10 S 2.62 92.54 5.46 -56.49 -0.31 92.23 16 11 O -1.00 -41.92 18.08 -127.65 -2.31 -44.23 16 12 O -1.00 -41.94 17.50 -127.65 -2.23 -44.18 16 13 C -0.59 -21.81 6.01 71.98 0.43 -21.38 16 14 C 0.02 0.97 4.98 29.85 0.15 1.12 16 15 C -0.54 -29.76 9.11 25.60 0.23 -29.52 16 16 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 17 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 18 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 19 Si 0.97 43.22 29.54 68.60 2.03 45.25 16 20 H -0.25 -10.49 7.11 99.48 0.71 -9.78 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 23 C -0.12 -1.64 6.03 31.32 0.19 -1.45 16 24 H 0.05 0.61 8.12 -2.39 -0.02 0.59 16 25 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 0.80 7.83 -2.39 -0.02 0.78 16 29 H 0.07 0.93 8.01 -2.39 -0.02 0.91 16 30 H 0.07 1.02 8.00 -2.38 -0.02 1.00 16 31 H 0.07 1.58 7.69 -2.39 -0.02 1.56 16 32 H 0.08 1.39 8.06 -2.39 -0.02 1.37 16 33 H 0.42 8.34 8.20 -96.75 -0.79 7.55 16 34 H 0.14 4.54 8.14 -2.39 -0.02 4.52 16 35 H 0.14 4.63 8.14 -2.39 -0.02 4.61 16 36 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 39 H 0.07 0.97 7.84 -2.39 -0.02 0.95 16 40 H 0.07 0.96 7.67 -2.39 -0.02 0.94 16 Total: -1.00 -74.30 336.37 -0.52 -74.82 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.21 Total: 15.23 kcal Atomic # 6 Polarization: -57.77 SS G_CDS: 2.90 Total: -54.87 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -0.80 Total: -84.26 kcal Atomic # 8 Polarization: -83.86 SS G_CDS: -4.54 Total: -88.40 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 92.54 SS G_CDS: -0.31 Total: 92.23 kcal Total: -74.30 -0.52 -74.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360375836.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.997 kcal (2) G-P(sol) polarization free energy of solvation -74.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds