Wall clock time and date at job start Mon Mar 30 2020 02:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.43583 * 2 1 4 4 C 1.54266 * 110.48524 * 122.54344 * 2 1 3 5 5 C 1.53879 * 106.59795 * 142.28904 * 4 2 1 6 6 C 1.54268 * 106.60071 * 0.02562 * 5 4 2 7 7 H 1.08998 * 110.48701 * 95.19749 * 6 5 4 8 8 C 1.53000 * 110.48441 * 217.71224 * 6 5 4 9 9 N 1.46492 * 109.47061 * 291.75450 * 8 6 5 10 10 S 1.65606 * 120.00135 * 165.00255 * 9 8 6 11 11 O 1.42100 * 104.27450 * 308.93172 * 10 9 8 12 12 O 1.42093 * 104.28025 * 181.07088 * 10 9 8 13 13 C 1.81403 * 104.44724 * 64.99830 * 10 9 8 14 14 C 1.53001 * 109.47153 * 180.02562 * 13 10 9 15 15 C 1.50694 * 109.47168 * 180.02562 * 14 13 10 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.54894 * 104.31103 * 336.45473 * 6 5 4 24 24 H 1.08992 * 109.46944 * 298.91279 * 1 2 3 25 25 H 1.09005 * 109.46501 * 58.91054 * 1 2 3 26 26 H 1.08999 * 109.46999 * 178.90579 * 1 2 3 27 27 H 1.08993 * 110.03479 * 23.00583 * 4 2 1 28 28 H 1.08999 * 110.07662 * 261.59476 * 4 2 1 29 29 H 1.09004 * 110.03083 * 240.71352 * 5 4 2 30 30 H 1.09005 * 110.03238 * 119.28246 * 5 4 2 31 31 H 1.08999 * 109.46748 * 171.75408 * 8 6 5 32 32 H 1.08995 * 109.47152 * 51.75997 * 8 6 5 33 33 H 0.97001 * 120.00007 * 345.00068 * 9 8 6 34 34 H 1.09002 * 109.46959 * 60.00458 * 13 10 9 35 35 H 1.08998 * 109.47334 * 299.99936 * 13 10 9 36 36 H 1.09007 * 109.46922 * 59.99828 * 14 13 10 37 37 H 1.09003 * 109.46836 * 300.00583 * 14 13 10 38 38 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 39 39 H 1.08997 * 110.75555 * 156.19008 * 23 6 5 40 40 H 1.09002 * 110.75786 * 279.56602 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0699 -0.7774 1.2182 5 6 3.3165 -1.5396 0.7359 6 6 3.4911 -1.1984 -0.7584 7 1 4.1921 -0.3728 -0.8818 8 6 3.9696 -2.4263 -1.5357 9 7 5.3387 -2.7564 -1.1325 10 16 5.9824 -4.2327 -1.5183 11 8 5.0104 -5.1669 -1.0692 12 8 7.2866 -4.2045 -0.9551 13 6 6.0713 -4.2281 -3.3302 14 6 6.6564 -5.5558 -3.8155 15 6 6.7308 -5.5518 -5.3206 16 1 6.3948 -4.6884 -5.8756 17 6 7.2279 -6.6504 -5.9892 18 7 7.6376 -7.7016 -5.3134 19 14 7.3195 -6.6456 -7.8550 20 1 7.8876 -7.9343 -8.3260 21 1 5.9563 -6.4701 -8.4170 22 1 8.1881 -5.5284 -8.3050 23 6 2.0741 -0.7805 -1.2238 24 1 -0.3633 0.4968 0.8995 25 1 -0.3632 0.5307 -0.8801 26 1 -0.3633 -1.0275 -0.0196 27 1 1.3176 -1.4803 1.5758 28 1 2.3410 -0.0840 2.0143 29 1 3.1692 -2.6126 0.8595 30 1 4.1928 -1.2155 1.2974 31 1 3.9473 -2.2113 -2.6040 32 1 3.3141 -3.2702 -1.3212 33 1 5.8683 -2.1103 -0.6395 34 1 6.7082 -3.4075 -3.6606 35 1 5.0705 -4.1001 -3.7427 36 1 6.0191 -6.3762 -3.4850 37 1 7.6571 -5.6843 -3.4028 38 1 7.9869 -8.4746 -5.7839 39 1 2.1300 -0.1368 -2.1016 40 1 1.4592 -1.6577 -1.4251 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360375837.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:38 Heat of formation + Delta-G solvation = -112.837317 kcal Electronic energy + Delta-G solvation = -19500.469439 eV Core-core repulsion = 16440.713534 eV Total energy + Delta-G solvation = -3059.755905 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.01729 -36.55162 -35.43881 -35.06463 -33.87871 -31.25011 -31.14210 -29.31827 -25.96969 -25.58490 -23.79566 -21.66087 -20.48685 -19.80848 -18.81233 -17.36400 -16.57229 -16.37119 -15.93867 -15.40690 -14.72716 -14.54542 -14.35769 -14.27551 -13.70544 -13.39631 -13.32713 -12.78008 -12.49905 -12.15531 -11.93804 -11.74597 -11.56621 -11.47351 -11.21379 -11.16734 -11.06046 -10.95518 -10.93214 -10.82594 -10.69120 -10.53529 -10.42113 -10.36187 -9.76617 -9.45234 -8.98616 -8.49402 -6.11705 -4.17353 0.83405 3.19210 3.27553 3.32325 3.34171 4.25261 4.29819 4.35658 4.39906 4.48022 4.76291 4.90997 5.06522 5.16054 5.18752 5.23321 5.33663 5.36114 5.38605 5.46197 5.56593 5.61664 5.68779 5.72457 5.75459 5.83131 5.90002 5.91251 5.97074 6.14371 6.21285 6.25939 6.50596 7.14244 7.31244 7.37771 7.81072 8.18513 8.85869 9.47258 10.99332 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.027557 B = 0.003708 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.838174 B = 7549.954888 C = 8233.886904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.072 0.928 4 C -0.121 4.121 5 C -0.123 4.123 6 C -0.097 4.097 7 H 0.080 0.920 8 C 0.121 3.879 9 N -1.127 6.127 10 S 2.594 3.406 11 O -0.968 6.968 12 O -0.969 6.969 13 C -0.590 4.590 14 C 0.028 3.972 15 C -0.521 4.521 16 H 0.061 0.939 17 C 0.058 3.942 18 N -0.891 5.891 19 Si 0.901 3.099 20 H -0.285 1.285 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.116 4.116 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.411 0.589 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.034 0.966 37 H 0.033 0.967 38 H 0.266 0.734 39 H 0.069 0.931 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.711 16.319 9.729 22.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.090 0.910 4 C -0.159 4.159 5 C -0.160 4.160 6 C -0.117 4.117 7 H 0.099 0.901 8 C -0.005 4.005 9 N -0.884 5.884 10 S 2.691 3.309 11 O -0.958 6.958 12 O -0.960 6.960 13 C -0.723 4.723 14 C -0.011 4.011 15 C -0.561 4.561 16 H 0.079 0.921 17 C -0.145 4.145 18 N -0.529 5.529 19 Si 0.728 3.272 20 H -0.211 1.211 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.154 4.154 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.244 0.756 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.511 15.329 10.285 21.754 hybrid contribution 0.238 0.595 -1.413 1.551 sum -11.272 15.924 8.872 21.433 Atomic orbital electron populations 1.21810 0.95053 1.01928 1.01442 1.21973 0.95440 0.99175 0.94994 0.90963 1.22229 0.97452 0.98784 0.97421 1.22232 0.97735 1.01036 0.95041 1.22183 0.97271 0.97076 0.95192 0.90123 1.21353 0.82522 0.98234 0.98422 1.55760 1.22846 1.37167 1.72670 1.05487 0.73586 0.72754 0.79048 1.93535 1.61512 1.60731 1.79987 1.93547 1.39813 1.85492 1.77121 1.30444 1.10042 1.10476 1.21379 1.18957 0.96593 0.87083 0.98483 1.20976 1.43108 1.01675 0.90328 0.92104 1.25073 0.95061 0.95400 0.98958 1.69948 1.41679 1.05309 1.35931 0.86523 0.78460 0.77396 0.84845 1.21077 1.20073 1.20092 1.22633 0.95123 1.00138 0.97487 0.92872 0.92732 0.92476 0.91705 0.92139 0.91032 0.91856 0.91746 0.90182 0.75570 0.86150 0.86370 0.94824 0.94857 0.92471 0.91243 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.12 37.16 0.34 -0.63 16 2 C -0.10 -0.71 3.45 -88.90 -0.31 -1.02 16 3 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 4 C -0.12 -0.96 6.38 -25.61 -0.16 -1.12 16 5 C -0.12 -1.13 6.22 -25.61 -0.16 -1.29 16 6 C -0.10 -0.87 2.92 -88.96 -0.26 -1.12 16 7 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 8 C 0.12 1.33 5.45 -4.05 -0.02 1.31 16 9 N -1.13 -14.32 5.73 -10.62 -0.06 -14.38 16 10 S 2.59 46.17 5.46 -107.50 -0.59 45.59 16 11 O -0.97 -20.09 17.50 -57.54 -1.01 -21.09 16 12 O -0.97 -20.22 18.08 -57.54 -1.04 -21.26 16 13 C -0.59 -11.24 6.01 37.16 0.22 -11.02 16 14 C 0.03 0.71 4.98 -27.89 -0.14 0.58 16 15 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 19 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 23 C -0.12 -0.91 5.77 -24.67 -0.14 -1.05 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.52 7.84 -51.93 -0.41 0.11 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.95 7.56 -51.93 -0.39 0.56 16 33 H 0.41 4.42 8.62 -34.47 -0.30 4.13 16 34 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 35 H 0.12 2.00 8.14 -51.93 -0.42 1.58 16 36 H 0.03 0.91 8.14 -51.92 -0.42 0.48 16 37 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.60 7.97 -51.93 -0.41 0.18 16 LS Contribution 337.39 15.07 5.08 5.08 Total: -1.00 -34.24 337.39 -9.89 -44.13 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.95 Total: 0.21 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: -1.04 Total: -28.62 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.68 Total: -40.25 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -2.05 Total: -42.35 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 46.17 SS G_CDS: -0.59 Total: 45.59 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.24 -9.89 -44.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360375837.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.711 kcal (2) G-P(sol) polarization free energy of solvation -34.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds