Wall clock time and date at job start Mon Mar 30 2020 02:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.43583 * 2 1 4 4 C 1.54266 * 110.48524 * 122.54344 * 2 1 3 5 5 C 1.53879 * 106.59795 * 142.28904 * 4 2 1 6 6 C 1.54268 * 106.60071 * 0.02562 * 5 4 2 7 7 H 1.08998 * 110.48701 * 95.19749 * 6 5 4 8 8 C 1.53000 * 110.48441 * 217.71224 * 6 5 4 9 9 N 1.46492 * 109.47061 * 291.75450 * 8 6 5 10 10 S 1.65606 * 120.00135 * 165.00255 * 9 8 6 11 11 O 1.42100 * 104.27450 * 308.93172 * 10 9 8 12 12 O 1.42093 * 104.28025 * 181.07088 * 10 9 8 13 13 C 1.81403 * 104.44724 * 64.99830 * 10 9 8 14 14 C 1.53001 * 109.47153 * 180.02562 * 13 10 9 15 15 C 1.50694 * 109.47168 * 180.02562 * 14 13 10 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.54894 * 104.31103 * 336.45473 * 6 5 4 24 24 H 1.08992 * 109.46944 * 298.91279 * 1 2 3 25 25 H 1.09005 * 109.46501 * 58.91054 * 1 2 3 26 26 H 1.08999 * 109.46999 * 178.90579 * 1 2 3 27 27 H 1.08993 * 110.03479 * 23.00583 * 4 2 1 28 28 H 1.08999 * 110.07662 * 261.59476 * 4 2 1 29 29 H 1.09004 * 110.03083 * 240.71352 * 5 4 2 30 30 H 1.09005 * 110.03238 * 119.28246 * 5 4 2 31 31 H 1.08999 * 109.46748 * 171.75408 * 8 6 5 32 32 H 1.08995 * 109.47152 * 51.75997 * 8 6 5 33 33 H 0.97001 * 120.00007 * 345.00068 * 9 8 6 34 34 H 1.09002 * 109.46959 * 60.00458 * 13 10 9 35 35 H 1.08998 * 109.47334 * 299.99936 * 13 10 9 36 36 H 1.09007 * 109.46922 * 59.99828 * 14 13 10 37 37 H 1.09003 * 109.46836 * 300.00583 * 14 13 10 38 38 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 39 39 H 1.08997 * 110.75555 * 156.19008 * 23 6 5 40 40 H 1.09002 * 110.75786 * 279.56602 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0699 -0.7774 1.2182 5 6 3.3165 -1.5396 0.7359 6 6 3.4911 -1.1984 -0.7584 7 1 4.1921 -0.3728 -0.8818 8 6 3.9696 -2.4263 -1.5357 9 7 5.3387 -2.7564 -1.1325 10 16 5.9824 -4.2327 -1.5183 11 8 5.0104 -5.1669 -1.0692 12 8 7.2866 -4.2045 -0.9551 13 6 6.0713 -4.2281 -3.3302 14 6 6.6564 -5.5558 -3.8155 15 6 6.7308 -5.5518 -5.3206 16 1 6.3948 -4.6884 -5.8756 17 6 7.2279 -6.6504 -5.9892 18 7 7.6376 -7.7016 -5.3134 19 14 7.3195 -6.6456 -7.8550 20 1 7.8876 -7.9343 -8.3260 21 1 5.9563 -6.4701 -8.4170 22 1 8.1881 -5.5284 -8.3050 23 6 2.0741 -0.7805 -1.2238 24 1 -0.3633 0.4968 0.8995 25 1 -0.3632 0.5307 -0.8801 26 1 -0.3633 -1.0275 -0.0196 27 1 1.3176 -1.4803 1.5758 28 1 2.3410 -0.0840 2.0143 29 1 3.1692 -2.6126 0.8595 30 1 4.1928 -1.2155 1.2974 31 1 3.9473 -2.2113 -2.6040 32 1 3.3141 -3.2702 -1.3212 33 1 5.8683 -2.1103 -0.6395 34 1 6.7082 -3.4075 -3.6606 35 1 5.0705 -4.1001 -3.7427 36 1 6.0191 -6.3762 -3.4850 37 1 7.6571 -5.6843 -3.4028 38 1 7.9869 -8.4746 -5.7839 39 1 2.1300 -0.1368 -2.1016 40 1 1.4592 -1.6577 -1.4251 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360375837.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:37 Heat of formation + Delta-G solvation = -136.818046 kcal Electronic energy + Delta-G solvation = -19501.509322 eV Core-core repulsion = 16440.713534 eV Total energy + Delta-G solvation = -3060.795787 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.70507 -38.13082 -37.00346 -36.04019 -35.88529 -33.11634 -31.96936 -30.01295 -27.58304 -26.68197 -24.55556 -23.58101 -21.21479 -20.48066 -20.17955 -19.04215 -18.17585 -17.42329 -17.08197 -16.84912 -16.52468 -15.98035 -15.30676 -15.05523 -14.90504 -14.45539 -14.38101 -13.99989 -13.72369 -13.49341 -13.27485 -13.18605 -13.07818 -12.89709 -12.78762 -12.69444 -12.22140 -12.15647 -11.95066 -11.83854 -11.71917 -11.58578 -11.45276 -11.40533 -11.18608 -11.13814 -10.63492 -10.27047 -8.25540 -6.39817 -0.64755 1.41301 1.44939 1.53073 1.89777 2.38667 2.83212 3.07794 3.29175 3.65100 3.66879 3.83290 4.02131 4.15470 4.24901 4.35093 4.50640 4.52678 4.59157 4.74583 4.76476 4.78206 4.80229 4.88386 4.98164 5.09095 5.18017 5.19538 5.25131 5.28365 5.29169 5.39925 5.43669 5.55136 5.64010 5.68762 6.06665 6.17940 6.73989 7.30420 8.86614 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.027557 B = 0.003708 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.838174 B = 7549.954888 C = 8233.886904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.080 0.920 4 C -0.121 4.121 5 C -0.128 4.128 6 C -0.092 4.092 7 H 0.096 0.904 8 C 0.110 3.890 9 N -1.106 6.106 10 S 2.621 3.379 11 O -1.000 7.000 12 O -1.002 7.002 13 C -0.588 4.588 14 C 0.019 3.981 15 C -0.541 4.541 16 H 0.077 0.923 17 C -0.005 4.005 18 N -0.935 5.935 19 Si 0.975 3.025 20 H -0.285 1.285 21 H -0.262 1.262 22 H -0.263 1.263 23 C -0.115 4.115 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.424 0.576 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.006 0.994 37 H 0.005 0.995 38 H 0.267 0.733 39 H 0.082 0.918 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.681 18.786 8.628 24.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.099 0.901 4 C -0.158 4.158 5 C -0.166 4.166 6 C -0.112 4.112 7 H 0.114 0.886 8 C -0.016 4.016 9 N -0.868 5.868 10 S 2.717 3.283 11 O -0.989 6.989 12 O -0.992 6.992 13 C -0.720 4.720 14 C -0.020 4.020 15 C -0.580 4.580 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.575 5.575 19 Si 0.798 3.202 20 H -0.211 1.211 21 H -0.187 1.187 22 H -0.188 1.188 23 C -0.153 4.153 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.260 0.740 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.025 0.975 37 H 0.024 0.976 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.480 17.813 9.185 23.610 hybrid contribution 0.496 -0.134 -0.988 1.114 sum -11.984 17.680 8.197 22.877 Atomic orbital electron populations 1.21801 0.94610 1.01759 1.02004 1.21973 0.95808 0.99327 0.94212 0.90130 1.22226 0.96753 0.98803 0.98033 1.22271 0.98600 1.00019 0.95701 1.22185 0.98245 0.96350 0.94429 0.88601 1.21663 0.80879 0.98924 1.00123 1.55239 1.23636 1.35667 1.72287 1.04386 0.72448 0.73358 0.78065 1.93494 1.62285 1.62895 1.80267 1.93496 1.41783 1.86412 1.77535 1.30333 1.11423 1.07441 1.22789 1.18824 0.95063 0.89934 0.98151 1.21514 1.42666 1.02230 0.91558 0.90494 1.26143 0.94562 0.94956 1.04664 1.70102 1.42918 1.06203 1.38248 0.85349 0.79148 0.77617 0.78046 1.21051 1.18657 1.18764 1.22654 0.94174 1.00277 0.98218 0.92387 0.92129 0.93030 0.92127 0.91387 0.93010 0.91536 0.89664 0.91312 0.73954 0.83853 0.83926 0.97534 0.97640 0.92398 0.89978 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.12 71.98 0.66 -0.98 16 2 C -0.09 -1.17 3.45 -9.68 -0.03 -1.20 16 3 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 4 C -0.12 -1.72 6.38 31.32 0.20 -1.52 16 5 C -0.13 -2.19 6.22 31.32 0.19 -1.99 16 6 C -0.09 -1.42 2.92 -9.72 -0.03 -1.44 16 7 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 8 C 0.11 2.18 5.45 86.38 0.47 2.65 16 9 N -1.11 -26.27 5.73 -187.51 -1.07 -27.34 16 10 S 2.62 92.77 5.46 -56.49 -0.31 92.46 16 11 O -1.00 -42.05 17.50 -127.65 -2.23 -44.29 16 12 O -1.00 -42.06 18.08 -127.65 -2.31 -44.37 16 13 C -0.59 -21.88 6.01 71.98 0.43 -21.45 16 14 C 0.02 1.00 4.98 29.85 0.15 1.15 16 15 C -0.54 -29.97 9.11 25.60 0.23 -29.74 16 16 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 17 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 18 N -0.94 -57.22 13.29 21.45 0.28 -56.93 16 19 Si 0.98 43.18 29.54 68.60 2.03 45.21 16 20 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 22 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 23 C -0.11 -1.52 5.77 31.93 0.18 -1.34 16 24 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.91 7.84 -2.39 -0.02 0.89 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.05 1.08 7.75 -2.38 -0.02 1.06 16 30 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 1.56 7.56 -2.39 -0.02 1.54 16 33 H 0.42 8.23 8.62 -96.74 -0.83 7.40 16 34 H 0.14 4.64 8.14 -2.39 -0.02 4.62 16 35 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 36 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 37 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 39 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.07 0.99 7.97 -2.39 -0.02 0.97 16 Total: -1.00 -74.72 337.39 -0.52 -75.24 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.17 Total: 15.69 kcal Atomic # 6 Polarization: -58.59 SS G_CDS: 2.92 Total: -55.67 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -0.79 Total: -84.27 kcal Atomic # 8 Polarization: -84.12 SS G_CDS: -4.54 Total: -88.66 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 92.77 SS G_CDS: -0.31 Total: 92.46 kcal Total: -74.72 -0.52 -75.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360375837.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.573 kcal (2) G-P(sol) polarization free energy of solvation -74.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds