Wall clock time and date at job start Mon Mar 30 2020 02:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.88715 * 2 1 4 4 C 1.54909 * 111.00161 * 123.87861 * 2 1 3 5 5 N 1.47429 * 104.83024 * 155.08433 * 4 2 1 6 6 S 1.65601 * 125.64549 * 155.83609 * 5 4 2 7 7 O 1.42099 * 104.27924 * 333.92680 * 6 5 4 8 8 O 1.42112 * 104.27448 * 206.07178 * 6 5 4 9 9 C 1.81402 * 104.45065 * 90.00107 * 6 5 4 10 10 C 1.52997 * 109.46890 * 179.97438 * 9 6 5 11 11 C 1.53004 * 109.47000 * 180.02562 * 10 9 6 12 12 C 1.50701 * 109.47211 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99694 * 180.27574 * 12 11 10 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 11 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 11 17 17 H 1.48504 * 109.47209 * 89.99886 * 16 14 12 18 18 H 1.48501 * 109.47358 * 209.99377 * 16 14 12 19 19 H 1.48496 * 109.47341 * 329.99989 * 16 14 12 20 20 C 1.47018 * 108.70285 * 336.10051 * 5 4 2 21 21 C 1.54315 * 107.27606 * 0.70346 * 20 5 4 22 22 H 1.09002 * 111.07674 * 264.04035 * 21 20 5 23 23 C 1.52997 * 110.58950 * 140.78774 * 21 20 5 24 24 H 1.09005 * 109.47027 * 297.57964 * 1 2 3 25 25 H 1.09002 * 109.46962 * 57.56934 * 1 2 3 26 26 H 1.08995 * 109.47283 * 177.57587 * 1 2 3 27 27 H 1.08998 * 110.37069 * 36.24546 * 4 2 1 28 28 H 1.09004 * 110.36712 * 273.92043 * 4 2 1 29 29 H 1.08995 * 109.46864 * 59.99580 * 9 6 5 30 30 H 1.08998 * 109.46731 * 299.99965 * 9 6 5 31 31 H 1.09000 * 109.47849 * 59.99708 * 10 9 6 32 32 H 1.09007 * 109.47288 * 299.99302 * 10 9 6 33 33 H 1.09000 * 109.47211 * 59.99130 * 11 10 9 34 34 H 1.09007 * 109.46376 * 299.99672 * 11 10 9 35 35 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.88364 * 120.24899 * 20 5 4 37 37 H 1.09007 * 109.87945 * 241.41551 * 20 5 4 38 38 H 1.08995 * 109.47561 * 306.64526 * 23 21 20 39 39 H 1.08998 * 109.47479 * 66.65113 * 23 21 20 40 40 H 1.09007 * 109.47085 * 186.64869 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 1.2006 5 7 3.4271 -1.2428 0.7738 6 16 4.6815 -1.6321 1.7825 7 8 4.4184 -0.8961 2.9692 8 8 5.8456 -1.3805 1.0071 9 6 4.4873 -3.4110 2.0804 10 6 5.6013 -3.8968 3.0099 11 6 5.4379 -5.3973 3.2607 12 6 6.5347 -5.8758 4.1768 13 1 7.2746 -5.1795 4.5430 14 6 6.5972 -7.2038 4.5422 15 7 5.6965 -8.0518 4.0960 16 14 7.9613 -7.7985 5.6714 17 1 7.5180 -7.6874 7.0843 18 1 8.2775 -9.2160 5.3619 19 1 9.1729 -6.9648 5.4658 20 6 3.4691 -1.2691 -0.6955 21 6 2.0862 -0.8084 -1.2019 22 1 1.4451 -1.6619 -1.4223 23 6 2.2350 0.0866 -2.4338 24 1 -0.3633 0.4758 0.9109 25 1 -0.3633 0.5511 -0.8674 26 1 -0.3633 -1.0267 -0.0435 27 1 1.4518 -1.6698 1.4032 28 1 2.1559 -0.1711 2.0838 29 1 4.5457 -3.9465 1.1329 30 1 3.5190 -3.5980 2.5445 31 1 5.5434 -3.3613 3.9575 32 1 6.5695 -3.7099 2.5454 33 1 5.4960 -5.9326 2.3130 34 1 4.4696 -5.5847 3.7251 35 1 5.7407 -8.9861 4.3528 36 1 4.2428 -0.5914 -1.0564 37 1 3.6699 -2.2828 -1.0425 38 1 2.9227 0.9021 -2.2096 39 1 2.6263 -0.5006 -3.2645 40 1 1.2619 0.4962 -2.7050 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408407437.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:57 Heat of formation + Delta-G solvation = -121.661413 kcal Electronic energy + Delta-G solvation = -19710.141586 eV Core-core repulsion = 16650.003040 eV Total energy + Delta-G solvation = -3060.138547 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.94706 -38.26768 -37.11422 -36.50145 -34.19145 -33.97165 -32.13646 -29.69021 -27.25675 -26.66179 -25.57575 -22.64203 -22.22558 -20.97619 -19.99994 -18.75537 -18.50091 -17.54964 -17.19706 -16.58281 -16.42971 -15.79904 -15.20538 -14.80755 -14.66626 -14.51201 -14.10602 -13.97387 -13.87912 -13.56946 -13.33827 -13.23296 -13.15385 -13.02396 -12.96362 -12.77343 -12.65510 -12.45118 -12.27447 -12.15136 -11.79308 -11.65217 -11.56265 -11.41080 -11.20014 -11.12256 -10.59482 -9.93498 -8.24478 -6.35930 -0.84353 1.39242 1.40155 1.51663 1.64745 2.38579 2.75317 3.00919 3.08952 3.50500 3.63757 3.73158 3.85737 3.94764 4.30476 4.34418 4.46584 4.52827 4.57736 4.61308 4.64562 4.74701 4.77940 4.89412 4.94211 5.00971 5.03769 5.17674 5.18764 5.24823 5.28080 5.38883 5.42271 5.51192 5.58900 5.59947 5.76714 6.17140 6.79333 7.33558 8.87105 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.034598 B = 0.003586 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.096059 B = 7805.919684 C = 7955.968958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 H 0.082 0.918 4 C 0.105 3.895 5 N -1.015 6.015 6 S 2.639 3.361 7 O -0.986 6.986 8 O -0.987 6.987 9 C -0.607 4.607 10 C -0.107 4.107 11 C 0.032 3.968 12 C -0.554 4.554 13 H 0.060 0.940 14 C 0.003 3.997 15 N -0.930 5.930 16 Si 0.964 3.036 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.265 1.265 20 C 0.109 3.891 21 C -0.092 4.092 22 H 0.099 0.901 23 C -0.141 4.141 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.003 0.997 34 H 0.003 0.997 35 H 0.265 0.735 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.212 15.853 -12.622 23.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.115 4.115 3 H 0.100 0.900 4 C -0.019 4.019 5 N -0.854 5.854 6 S 2.737 3.263 7 O -0.976 6.976 8 O -0.977 6.977 9 C -0.737 4.737 10 C -0.146 4.146 11 C -0.007 4.007 12 C -0.592 4.592 13 H 0.078 0.922 14 C -0.195 4.195 15 N -0.570 5.570 16 Si 0.789 3.211 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.189 1.189 20 C -0.015 4.015 21 C -0.111 4.111 22 H 0.118 0.882 23 C -0.198 4.198 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.161 0.839 30 H 0.162 0.838 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.021 0.979 34 H 0.021 0.979 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.527 16.282 -12.244 23.407 hybrid contribution 0.484 -1.300 0.634 1.525 sum -11.043 14.982 -11.611 21.937 Atomic orbital electron populations 1.21696 0.92182 1.02842 1.02786 1.22436 0.97185 0.98903 0.92932 0.90007 1.22421 0.81473 0.99258 0.98772 1.58439 1.27241 1.82470 1.17232 1.03956 0.72379 0.77435 0.72486 1.93512 1.85011 1.69874 1.49247 1.93516 1.48533 1.85021 1.70639 1.30533 1.08886 1.24159 1.10163 1.21327 0.95895 0.99639 0.97725 1.18960 0.95988 0.90090 0.95635 1.21734 1.12975 0.94677 1.29825 0.92162 1.25947 0.98710 0.97025 0.97865 1.70068 1.36632 1.04111 1.46138 0.85456 0.79218 0.77563 0.78896 1.19645 1.20442 1.18904 1.22095 0.99634 1.02120 0.77696 1.22329 0.94167 0.99356 0.95284 0.88236 1.21768 1.02691 0.99074 0.96315 0.92011 0.91011 0.91760 0.89848 0.90752 0.83911 0.83848 0.91527 0.91590 0.97873 0.97865 0.92572 0.91632 0.90674 0.92937 0.91723 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.29 71.98 0.67 -0.66 16 2 C -0.09 -1.31 3.08 -9.40 -0.03 -1.34 16 3 H 0.08 1.19 8.05 -2.39 -0.02 1.17 16 4 C 0.11 1.98 6.54 86.85 0.57 2.55 16 5 N -1.01 -23.68 3.62 -506.43 -1.83 -25.51 16 6 S 2.64 81.62 5.65 -56.49 -0.32 81.30 16 7 O -0.99 -35.85 17.28 -127.65 -2.21 -38.05 16 8 O -0.99 -36.08 17.60 -127.65 -2.25 -38.32 16 9 C -0.61 -19.18 6.18 71.98 0.44 -18.73 16 10 C -0.11 -4.47 5.16 30.59 0.16 -4.31 16 11 C 0.03 1.66 4.97 29.85 0.15 1.81 16 12 C -0.55 -31.96 9.11 25.60 0.23 -31.72 16 13 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 14 C 0.00 0.16 5.46 84.65 0.46 0.62 16 15 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 16 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 20 C 0.11 2.09 6.48 86.73 0.56 2.65 16 21 C -0.09 -1.21 3.03 -9.61 -0.03 -1.24 16 22 H 0.10 1.09 8.01 -2.39 -0.02 1.07 16 23 C -0.14 -1.49 9.16 71.98 0.66 -0.83 16 24 H 0.06 0.58 8.14 -2.38 -0.02 0.57 16 25 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.06 0.58 8.11 -2.39 -0.02 0.56 16 27 H 0.08 1.30 8.04 -2.39 -0.02 1.28 16 28 H 0.07 1.53 7.67 -2.38 -0.02 1.52 16 29 H 0.14 4.02 8.14 -2.39 -0.02 4.00 16 30 H 0.14 4.02 8.14 -2.39 -0.02 4.01 16 31 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 33 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 34 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 35 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 36 H 0.07 1.35 7.76 -2.39 -0.02 1.33 16 37 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.05 0.63 8.05 -2.39 -0.02 0.61 16 39 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 Total: -1.00 -73.52 338.05 0.53 -72.99 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 0.98 Total: 8.09 kcal Atomic # 6 Polarization: -55.05 SS G_CDS: 3.85 Total: -51.20 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -1.55 Total: -81.32 kcal Atomic # 8 Polarization: -71.92 SS G_CDS: -4.45 Total: -76.38 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: 81.62 SS G_CDS: -0.32 Total: 81.30 kcal Total: -73.52 0.53 -72.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408407437.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.670 kcal (2) G-P(sol) polarization free energy of solvation -73.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds