Wall clock time and date at job start Mon Mar 30 2020 02:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47193 * 2 1 4 4 C 1.52997 * 109.47324 * 240.00325 * 2 1 3 5 5 C 1.50698 * 109.47290 * 175.05352 * 4 2 1 6 6 H 1.08005 * 120.00039 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00146 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99829 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99859 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47301 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46677 * 119.99860 * 9 7 5 12 12 H 1.48501 * 109.47093 * 239.99741 * 9 7 5 13 13 N 1.46898 * 109.47055 * 119.99991 * 2 1 3 14 14 C 1.46467 * 111.00134 * 287.69957 * 13 2 1 15 15 C 1.53187 * 109.83099 * 197.04638 * 14 13 2 16 16 H 1.09004 * 109.60113 * 57.07304 * 15 14 13 17 17 C 1.52995 * 109.60526 * 177.56306 * 15 14 13 18 18 S 1.81829 * 108.66991 * 297.24732 * 15 14 13 19 19 O 1.42102 * 108.76162 * 298.18259 * 18 15 14 20 20 O 1.42097 * 108.81054 * 166.70255 * 18 15 14 21 21 C 1.81821 * 100.96695 * 52.43302 * 18 15 14 22 22 H 1.08999 * 109.60019 * 187.88285 * 21 18 15 23 23 C 1.53002 * 109.73395 * 67.47608 * 21 18 15 24 24 C 1.46476 * 110.99933 * 53.55520 * 13 2 1 25 25 H 1.08996 * 109.47238 * 299.99811 * 1 2 3 26 26 H 1.08996 * 109.47182 * 59.99999 * 1 2 3 27 27 H 1.09008 * 109.47151 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47030 * 295.05067 * 4 2 1 29 29 H 1.09001 * 109.47430 * 55.04872 * 4 2 1 30 30 H 0.97001 * 119.99902 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.39807 * 317.12613 * 14 13 2 32 32 H 1.09000 * 109.40366 * 76.95565 * 14 13 2 33 33 H 1.08997 * 109.47174 * 59.99701 * 17 15 14 34 34 H 1.09001 * 109.47247 * 179.97438 * 17 15 14 35 35 H 1.09006 * 109.46684 * 299.99705 * 17 15 14 36 36 H 1.08995 * 109.47388 * 300.72643 * 23 21 18 37 37 H 1.09002 * 109.47119 * 60.72944 * 23 21 18 38 38 H 1.09001 * 109.46900 * 180.72708 * 23 21 18 39 39 H 1.08997 * 109.39516 * 283.12826 * 24 13 2 40 40 H 1.08994 * 109.39880 * 42.95760 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5420 -0.6159 -1.3120 6 1 4.0791 -0.0872 -0.5384 7 6 4.2305 -1.1938 -2.3576 8 7 3.5765 -1.8373 -3.2998 9 14 6.0923 -1.0627 -2.4357 10 1 6.5840 -0.2943 -1.2640 11 1 6.6854 -2.4241 -2.4185 12 1 6.4874 -0.3663 -3.6863 13 7 2.0196 -0.6925 1.1994 14 6 1.8026 0.1189 2.3994 15 6 2.6753 -0.4036 3.5448 16 1 3.7218 -0.3965 3.2398 17 6 2.4904 0.4841 4.7771 18 16 2.1639 -2.1037 3.9374 19 8 0.8097 -2.0857 4.3678 20 8 3.1508 -2.6987 4.7687 21 6 2.2429 -2.8770 2.2937 22 1 1.8243 -3.8823 2.3421 23 6 3.6978 -2.9486 1.8259 24 6 1.4287 -2.0280 1.3125 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.7509 -1.7712 -1.2061 29 1 1.6061 -0.2611 -2.1370 30 1 4.0609 -2.2441 -4.0352 31 1 2.0654 1.1554 2.1879 32 1 0.7534 0.0633 2.6892 33 1 1.4442 0.4682 5.0826 34 1 3.1118 0.1101 5.5908 35 1 2.7831 1.5060 4.5360 36 1 4.1159 -1.9429 1.7838 37 1 4.2751 -3.5531 2.5255 38 1 3.7390 -3.4009 0.8350 39 1 0.4038 -1.9409 1.6730 40 1 1.4288 -2.5080 0.3339 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411740252.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:21 Heat of formation + Delta-G solvation = -72.611858 kcal Electronic energy + Delta-G solvation = -21344.996091 eV Core-core repulsion = 18286.984493 eV Total energy + Delta-G solvation = -3058.011598 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.97539 -36.86500 -35.90614 -34.49096 -33.85706 -32.47804 -29.90440 -27.39958 -26.81001 -25.04419 -23.14406 -22.48383 -21.46047 -19.15167 -18.29579 -16.78074 -16.41484 -16.15788 -15.66095 -15.59772 -15.05193 -14.41805 -14.25858 -13.56192 -13.24583 -12.90111 -12.78107 -12.60933 -12.45055 -12.31381 -11.99456 -11.90004 -11.86538 -11.76764 -11.62239 -11.46133 -11.15806 -10.95735 -10.90477 -10.72738 -10.50588 -10.27140 -10.14004 -9.65868 -9.32544 -9.07044 -8.35679 -7.82204 -5.98687 -3.96986 0.18474 2.78326 3.30735 3.39674 3.42987 3.72380 3.91202 4.28551 4.47434 4.57031 4.72954 4.81470 5.06181 5.14087 5.28993 5.37211 5.39780 5.48331 5.61092 5.71235 5.78017 5.81772 5.86450 5.92481 5.98689 6.02345 6.16981 6.25178 6.39175 6.51379 6.73105 6.80282 7.26628 7.41434 7.69383 7.80218 8.01175 8.45527 9.08919 9.65354 11.13087 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.021477 B = 0.006744 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.421574 B = 4150.975870 C = 4595.257645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.093 3.907 3 H 0.077 0.923 4 C 0.028 3.972 5 C -0.491 4.491 6 H 0.062 0.938 7 C 0.052 3.948 8 N -0.902 5.902 9 Si 0.886 3.114 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.288 1.288 13 N -0.525 5.525 14 C 0.068 3.932 15 C -0.556 4.556 16 H 0.148 0.852 17 C -0.139 4.139 18 S 2.400 3.600 19 O -0.949 6.949 20 O -0.948 6.948 21 C -0.545 4.545 22 H 0.132 0.868 23 C -0.128 4.128 24 C 0.067 3.933 25 H 0.042 0.958 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.021 0.979 29 H 0.022 0.978 30 H 0.257 0.743 31 H 0.094 0.906 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.085 0.915 39 H 0.046 0.954 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.896 2.304 11.687 12.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.014 4.014 3 H 0.095 0.905 4 C -0.009 4.009 5 C -0.530 4.530 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.542 5.542 9 Si 0.714 3.286 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.249 5.249 14 C -0.061 4.061 15 C -0.666 4.666 16 H 0.166 0.834 17 C -0.197 4.197 18 S 2.585 3.415 19 O -0.946 6.946 20 O -0.945 6.945 21 C -0.656 4.656 22 H 0.150 0.850 23 C -0.186 4.186 24 C -0.062 4.062 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.112 0.888 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.064 0.936 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.613 1.771 12.320 12.960 hybrid contribution 0.447 0.315 -0.862 1.021 sum -3.166 2.086 11.458 12.069 Atomic orbital electron populations 1.22586 0.99199 1.01732 1.01198 1.21936 0.90358 0.98385 0.90700 0.90524 1.19256 0.96584 0.95363 0.89705 1.21162 0.91589 1.33153 1.07056 0.92007 1.24991 0.97904 0.95863 0.95977 1.69962 1.35166 1.36799 1.12297 0.86637 0.86512 0.77648 0.77784 1.19741 1.21280 1.21404 1.61259 1.59971 1.01557 1.02097 1.21870 0.96092 0.99568 0.88587 1.29966 1.11816 1.20771 1.04093 0.83419 1.21571 1.03100 1.00741 0.94334 1.08726 0.75358 0.79028 0.78425 1.93533 1.34575 1.86330 1.80151 1.93537 1.61408 1.75095 1.64485 1.29931 1.06639 1.10258 1.18822 0.84990 1.21517 0.89258 1.04653 1.03166 1.21887 0.93367 0.89752 1.01227 0.93856 0.92093 0.92653 0.96087 0.96020 0.93291 0.88768 0.93438 0.91116 0.91237 0.90017 0.89663 0.92268 0.89614 0.93625 0.86870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.86 8.53 37.16 0.32 -2.54 16 2 C 0.09 1.65 2.24 -67.72 -0.15 1.50 16 3 H 0.08 1.36 7.79 -51.93 -0.40 0.96 16 4 C 0.03 0.64 4.39 -27.89 -0.12 0.51 16 5 C -0.49 -12.50 8.84 -34.44 -0.30 -12.81 16 6 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 7 C 0.05 1.41 5.46 -17.82 -0.10 1.31 16 8 N -0.90 -25.71 13.29 55.43 0.74 -24.97 16 9 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 N -0.53 -8.47 3.22 -227.14 -0.73 -9.20 16 14 C 0.07 0.91 4.17 -3.96 -0.02 0.90 16 15 C -0.56 -6.96 2.84 -26.64 -0.08 -7.04 16 16 H 0.15 1.77 7.38 -51.93 -0.38 1.39 16 17 C -0.14 -1.45 9.19 37.15 0.34 -1.11 16 18 S 2.40 34.79 4.28 -107.50 -0.46 34.33 16 19 O -0.95 -15.75 18.06 -57.81 -1.04 -16.80 16 20 O -0.95 -15.95 17.72 -57.81 -1.02 -16.98 16 21 C -0.54 -7.78 3.40 -26.64 -0.09 -7.87 16 22 H 0.13 1.61 8.14 -51.93 -0.42 1.19 16 23 C -0.13 -1.95 8.80 37.16 0.33 -1.62 16 24 C 0.07 1.04 3.56 -3.96 -0.01 1.02 16 25 H 0.04 0.58 7.17 -51.93 -0.37 0.21 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.83 6.71 -51.92 -0.35 0.49 16 28 H 0.02 0.51 6.11 -51.93 -0.32 0.19 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.09 1.17 7.74 -51.93 -0.40 0.77 16 32 H 0.05 0.61 7.27 -51.93 -0.38 0.23 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.34 6.47 -51.93 -0.34 1.00 16 37 H 0.06 0.81 7.97 -51.93 -0.41 0.39 16 38 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.05 0.66 7.07 -51.93 -0.37 0.29 16 40 H 0.11 1.96 5.86 -51.93 -0.30 1.66 16 LS Contribution 319.43 15.07 4.81 4.81 Total: -1.00 -31.19 319.43 -9.14 -40.33 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -6.53 Total: 0.36 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 0.11 Total: -27.75 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.00 Total: -34.17 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -2.07 Total: -33.78 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 34.79 SS G_CDS: -0.46 Total: 34.33 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.19 -9.14 -40.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411740252.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.281 kcal (2) G-P(sol) polarization free energy of solvation -31.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds