Wall clock time and date at job start Mon Mar 30 2020 02:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47193 * 2 1 4 4 C 1.52997 * 109.47324 * 240.00325 * 2 1 3 5 5 C 1.50698 * 109.47290 * 175.05352 * 4 2 1 6 6 H 1.08005 * 120.00039 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00146 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99829 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99859 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47301 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46677 * 119.99860 * 9 7 5 12 12 H 1.48501 * 109.47093 * 239.99741 * 9 7 5 13 13 N 1.46898 * 109.47055 * 119.99991 * 2 1 3 14 14 C 1.46467 * 111.00134 * 287.69957 * 13 2 1 15 15 C 1.53187 * 109.83099 * 197.04638 * 14 13 2 16 16 H 1.09004 * 109.60113 * 57.07304 * 15 14 13 17 17 C 1.52995 * 109.60526 * 177.56306 * 15 14 13 18 18 S 1.81829 * 108.66991 * 297.24732 * 15 14 13 19 19 O 1.42102 * 108.76162 * 298.18259 * 18 15 14 20 20 O 1.42097 * 108.81054 * 166.70255 * 18 15 14 21 21 C 1.81821 * 100.96695 * 52.43302 * 18 15 14 22 22 H 1.08999 * 109.60019 * 187.88285 * 21 18 15 23 23 C 1.53002 * 109.73395 * 67.47608 * 21 18 15 24 24 C 1.46476 * 110.99933 * 53.55520 * 13 2 1 25 25 H 1.08996 * 109.47238 * 299.99811 * 1 2 3 26 26 H 1.08996 * 109.47182 * 59.99999 * 1 2 3 27 27 H 1.09008 * 109.47151 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47030 * 295.05067 * 4 2 1 29 29 H 1.09001 * 109.47430 * 55.04872 * 4 2 1 30 30 H 0.97001 * 119.99902 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.39807 * 317.12613 * 14 13 2 32 32 H 1.09000 * 109.40366 * 76.95565 * 14 13 2 33 33 H 1.08997 * 109.47174 * 59.99701 * 17 15 14 34 34 H 1.09001 * 109.47247 * 179.97438 * 17 15 14 35 35 H 1.09006 * 109.46684 * 299.99705 * 17 15 14 36 36 H 1.08995 * 109.47388 * 300.72643 * 23 21 18 37 37 H 1.09002 * 109.47119 * 60.72944 * 23 21 18 38 38 H 1.09001 * 109.46900 * 180.72708 * 23 21 18 39 39 H 1.08997 * 109.39516 * 283.12826 * 24 13 2 40 40 H 1.08994 * 109.39880 * 42.95760 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5420 -0.6159 -1.3120 6 1 4.0791 -0.0872 -0.5384 7 6 4.2305 -1.1938 -2.3576 8 7 3.5765 -1.8373 -3.2998 9 14 6.0923 -1.0627 -2.4357 10 1 6.5840 -0.2943 -1.2640 11 1 6.6854 -2.4241 -2.4185 12 1 6.4874 -0.3663 -3.6863 13 7 2.0196 -0.6925 1.1994 14 6 1.8026 0.1189 2.3994 15 6 2.6753 -0.4036 3.5448 16 1 3.7218 -0.3965 3.2398 17 6 2.4904 0.4841 4.7771 18 16 2.1639 -2.1037 3.9374 19 8 0.8097 -2.0857 4.3678 20 8 3.1508 -2.6987 4.7687 21 6 2.2429 -2.8770 2.2937 22 1 1.8243 -3.8823 2.3421 23 6 3.6978 -2.9486 1.8259 24 6 1.4287 -2.0280 1.3125 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.7509 -1.7712 -1.2061 29 1 1.6061 -0.2611 -2.1370 30 1 4.0609 -2.2441 -4.0352 31 1 2.0654 1.1554 2.1879 32 1 0.7534 0.0633 2.6892 33 1 1.4442 0.4682 5.0826 34 1 3.1118 0.1101 5.5908 35 1 2.7831 1.5060 4.5360 36 1 4.1159 -1.9429 1.7838 37 1 4.2751 -3.5531 2.5255 38 1 3.7390 -3.4009 0.8350 39 1 0.4038 -1.9409 1.6730 40 1 1.4288 -2.5080 0.3339 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411740252.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:20 Heat of formation + Delta-G solvation = -94.145141 kcal Electronic energy + Delta-G solvation = -21345.929844 eV Core-core repulsion = 18286.984493 eV Total energy + Delta-G solvation = -3058.945351 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.23655 -38.09523 -37.13191 -35.85355 -35.02025 -34.27943 -31.27761 -29.06015 -27.94996 -26.24296 -24.88789 -23.58120 -22.73593 -20.52390 -19.46159 -18.30202 -17.91417 -17.46559 -16.91635 -16.79879 -16.50590 -16.06638 -15.48554 -14.69245 -14.63161 -14.04492 -13.96136 -13.89234 -13.74881 -13.64622 -13.40517 -13.24548 -13.15368 -13.10911 -12.88955 -12.73136 -12.51657 -12.43757 -12.30944 -12.25604 -12.02672 -11.74176 -11.49993 -11.03419 -10.96001 -10.77459 -10.41861 -9.07465 -8.05083 -6.07747 -0.95118 1.42892 1.46665 1.56395 1.66328 2.50526 2.60902 2.72178 3.09851 3.31968 3.48510 3.63450 3.77105 3.98240 4.08535 4.18549 4.31080 4.43505 4.48120 4.57832 4.65522 4.69313 4.77165 4.84424 4.90227 4.97506 4.99836 5.08852 5.16318 5.23087 5.29509 5.45871 5.55236 5.73822 5.95273 6.21648 6.31659 6.49672 7.07356 7.57989 9.07103 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.021477 B = 0.006744 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.421574 B = 4150.975870 C = 4595.257645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.103 3.897 3 H 0.081 0.919 4 C 0.032 3.968 5 C -0.486 4.486 6 H 0.066 0.934 7 C -0.002 4.002 8 N -0.941 5.941 9 Si 0.944 3.056 10 H -0.260 1.260 11 H -0.289 1.289 12 H -0.290 1.290 13 N -0.539 5.539 14 C 0.065 3.935 15 C -0.540 4.540 16 H 0.156 0.844 17 C -0.145 4.145 18 S 2.408 3.592 19 O -0.970 6.970 20 O -0.973 6.973 21 C -0.546 4.546 22 H 0.149 0.851 23 C -0.127 4.127 24 C 0.067 3.933 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.002 0.998 29 H -0.007 1.007 30 H 0.255 0.745 31 H 0.112 0.888 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.627 3.736 13.471 14.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.005 4.005 3 H 0.099 0.901 4 C -0.006 4.006 5 C -0.525 4.525 6 H 0.084 0.916 7 C -0.198 4.198 8 N -0.584 5.584 9 Si 0.771 3.229 10 H -0.184 1.184 11 H -0.215 1.215 12 H -0.216 1.216 13 N -0.262 5.262 14 C -0.064 4.064 15 C -0.654 4.654 16 H 0.174 0.826 17 C -0.203 4.203 18 S 2.595 3.405 19 O -0.967 6.967 20 O -0.970 6.970 21 C -0.657 4.657 22 H 0.166 0.834 23 C -0.185 4.185 24 C -0.062 4.062 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.020 0.980 29 H 0.012 0.988 30 H 0.064 0.936 31 H 0.130 0.870 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.349 3.188 14.131 14.868 hybrid contribution 0.344 -0.105 -1.411 1.456 sum -3.005 3.083 12.720 13.429 Atomic orbital electron populations 1.22498 0.97143 1.01986 1.02484 1.21626 0.91979 0.97648 0.89227 0.90080 1.19131 0.95318 0.94660 0.91455 1.21524 0.93031 1.31588 1.06313 0.91583 1.25740 1.01914 0.96086 0.96062 1.70090 1.36684 1.38446 1.13157 0.85712 0.81867 0.77427 0.77916 1.18362 1.21515 1.21618 1.61125 1.60480 1.01941 1.02693 1.22005 0.97041 0.99931 0.87388 1.29865 1.12019 1.18626 1.04848 0.82580 1.21715 1.03769 1.01480 0.93342 1.08401 0.74478 0.79830 0.77756 1.93502 1.35654 1.87002 1.80539 1.93503 1.61831 1.76401 1.65300 1.29946 1.05871 1.11320 1.18611 0.83359 1.21475 0.90276 1.04419 1.02370 1.21822 0.94415 0.89663 1.00265 0.91201 0.92146 0.92962 0.98015 0.98837 0.93590 0.86987 0.92262 0.90672 0.90512 0.87678 0.90110 0.90858 0.91790 0.92252 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.22 8.53 71.98 0.61 -4.61 16 2 C 0.10 3.51 2.24 44.91 0.10 3.61 16 3 H 0.08 2.71 7.79 -2.39 -0.02 2.69 16 4 C 0.03 1.46 4.39 29.85 0.13 1.59 16 5 C -0.49 -24.78 8.84 25.60 0.23 -24.55 16 6 H 0.07 3.26 7.74 -2.91 -0.02 3.23 16 7 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 8 N -0.94 -54.97 13.29 21.45 0.28 -54.69 16 9 Si 0.94 42.94 29.54 68.60 2.03 44.97 16 10 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 12 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 13 N -0.54 -16.44 3.22 -872.55 -2.81 -19.25 16 14 C 0.07 1.53 4.17 86.45 0.36 1.89 16 15 C -0.54 -11.88 2.84 30.66 0.09 -11.80 16 16 H 0.16 3.25 7.38 -2.39 -0.02 3.23 16 17 C -0.14 -2.48 9.19 71.98 0.66 -1.82 16 18 S 2.41 65.34 4.28 -56.49 -0.24 65.10 16 19 O -0.97 -30.34 18.06 -127.39 -2.30 -32.64 16 20 O -0.97 -31.25 17.72 -127.39 -2.26 -33.51 16 21 C -0.55 -15.09 3.40 30.66 0.10 -14.98 16 22 H 0.15 3.51 8.14 -2.39 -0.02 3.49 16 23 C -0.13 -3.82 8.80 71.98 0.63 -3.18 16 24 C 0.07 2.04 3.56 86.44 0.31 2.35 16 25 H 0.07 1.64 7.17 -2.39 -0.02 1.62 16 26 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.05 1.52 6.71 -2.38 -0.02 1.50 16 28 H 0.00 0.08 6.11 -2.39 -0.01 0.07 16 29 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 30 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 31 H 0.11 2.30 7.74 -2.39 -0.02 2.28 16 32 H 0.06 1.30 7.27 -2.39 -0.02 1.28 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.08 2.46 6.47 -2.39 -0.02 2.44 16 37 H 0.07 1.94 7.97 -2.39 -0.02 1.93 16 38 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.06 1.62 7.07 -2.39 -0.02 1.60 16 40 H 0.09 3.12 5.86 -2.39 -0.01 3.10 16 Total: -1.00 -66.65 319.43 -0.60 -67.25 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 1.01 Total: 13.92 kcal Atomic # 6 Polarization: -54.85 SS G_CDS: 3.69 Total: -51.16 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -2.53 Total: -73.93 kcal Atomic # 8 Polarization: -61.59 SS G_CDS: -4.56 Total: -66.15 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: 65.34 SS G_CDS: -0.24 Total: 65.10 kcal Total: -66.65 -0.60 -67.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411740252.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.891 kcal (2) G-P(sol) polarization free energy of solvation -66.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds