Wall clock time and date at job start Mon Mar 30 2020 02:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47522 * 2 1 4 4 C 1.53003 * 109.47544 * 239.99638 * 2 1 3 5 5 C 1.50693 * 109.47214 * 176.81477 * 4 2 1 6 6 H 1.07995 * 120.00575 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99534 * 179.72631 * 5 4 2 8 8 N 1.31508 * 120.00399 * 0.27921 * 7 5 4 9 9 Si 1.86802 * 119.99894 * 180.27720 * 7 5 4 10 10 H 1.48500 * 109.47332 * 89.99918 * 9 7 5 11 11 H 1.48501 * 109.47156 * 210.00260 * 9 7 5 12 12 H 1.48503 * 109.46985 * 330.00074 * 9 7 5 13 13 N 1.46905 * 109.47009 * 120.00002 * 2 1 3 14 14 C 1.46473 * 111.00171 * 289.08643 * 13 2 1 15 15 C 1.53178 * 109.90395 * 196.99683 * 14 13 2 16 16 H 1.09002 * 109.59696 * 57.28682 * 15 14 13 17 17 C 1.52996 * 109.60126 * 177.60646 * 15 14 13 18 18 S 1.81812 * 108.67683 * 297.36823 * 15 14 13 19 19 O 1.42104 * 108.70143 * 166.57330 * 18 15 14 20 20 O 1.42096 * 108.70084 * 297.91384 * 18 15 14 21 21 C 1.81812 * 101.02438 * 52.31418 * 18 15 14 22 22 H 1.09000 * 109.60010 * 67.43806 * 21 18 15 23 23 C 1.52995 * 109.60490 * 187.76077 * 21 18 15 24 24 C 1.46471 * 110.99943 * 54.94329 * 13 2 1 25 25 H 1.09004 * 109.47535 * 300.00526 * 1 2 3 26 26 H 1.08999 * 109.46919 * 60.00026 * 1 2 3 27 27 H 1.08999 * 109.47522 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46394 * 56.81278 * 4 2 1 29 29 H 1.09001 * 109.47102 * 296.82215 * 4 2 1 30 30 H 0.96999 * 120.00455 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.39864 * 317.13697 * 14 13 2 32 32 H 1.09007 * 109.39629 * 76.86280 * 14 13 2 33 33 H 1.09003 * 109.47244 * 60.00427 * 17 15 14 34 34 H 1.09006 * 109.46723 * 180.02562 * 17 15 14 35 35 H 1.09001 * 109.47068 * 300.00125 * 17 15 14 36 36 H 1.09002 * 109.47316 * 60.00026 * 23 21 18 37 37 H 1.08998 * 109.47234 * 179.97438 * 23 21 18 38 38 H 1.09006 * 109.47244 * 300.00219 * 23 21 18 39 39 H 1.08999 * 109.39968 * 283.13077 * 24 13 2 40 40 H 1.08998 * 109.39860 * 42.87167 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5449 -0.6533 -1.2892 6 1 4.0837 -0.1467 -0.5023 7 6 4.2342 -1.2432 -2.3275 8 7 3.5782 -1.8605 -3.2856 9 14 6.1001 -1.1656 -2.3732 10 1 6.6620 -2.3412 -1.6608 11 1 6.5615 -1.1750 -3.7846 12 1 6.5600 0.0811 -1.7103 13 7 2.0196 -0.6925 1.1995 14 6 1.7730 0.1046 2.4033 15 6 2.6411 -0.4093 3.5560 16 1 3.6912 -0.3762 3.2657 17 6 2.4225 0.4648 4.7924 18 16 2.1605 -2.1230 3.9276 19 8 3.1517 -2.7028 4.7647 20 8 0.8025 -2.1348 4.3457 21 6 2.2736 -2.8810 2.2789 22 1 3.3152 -2.9065 1.9588 23 6 1.7173 -4.3054 2.3296 24 6 1.4540 -2.0402 1.2951 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6307 -0.2415 -2.1383 29 1 1.7240 -1.7641 -1.2211 30 1 4.0631 -2.2758 -4.0158 31 1 2.0174 1.1479 2.2031 32 1 0.7213 0.0272 2.6796 33 1 1.3730 0.4257 5.0842 34 1 3.0415 0.0975 5.6110 35 1 2.6977 1.4943 4.5629 36 1 0.6741 -4.2770 2.6444 37 1 1.7857 -4.7576 1.3402 38 1 2.2953 -4.8962 3.0403 39 1 0.4235 -1.9765 1.6444 40 1 1.4734 -2.5115 0.3125 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411740507.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:23 Heat of formation + Delta-G solvation = -74.939048 kcal Electronic energy + Delta-G solvation = -21139.877427 eV Core-core repulsion = 18081.764915 eV Total energy + Delta-G solvation = -3058.112513 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.90134 -36.81240 -35.92112 -34.51928 -34.14117 -32.46380 -30.04127 -27.49356 -26.74907 -25.17714 -23.23199 -21.99245 -21.63833 -19.13338 -18.57486 -16.79864 -16.58466 -16.29686 -15.70958 -15.51733 -14.98052 -14.39362 -14.00442 -13.68250 -13.27180 -13.06304 -12.88599 -12.81846 -12.43422 -12.29207 -12.18730 -11.97653 -11.88956 -11.82022 -11.63533 -11.45564 -11.31906 -11.05542 -11.00246 -10.75628 -10.51085 -10.25761 -10.12546 -9.70336 -9.32919 -9.09739 -8.35500 -7.85025 -5.98856 -3.97494 0.15942 2.80590 3.32266 3.39333 3.42185 3.68249 3.89622 4.27960 4.47513 4.54713 4.69321 4.79750 5.05445 5.09335 5.22829 5.34461 5.39152 5.46675 5.53333 5.60343 5.62745 5.78563 5.81477 5.84803 5.91290 5.92196 6.07120 6.11554 6.16807 6.39319 6.51366 6.78689 7.26342 7.41203 7.68581 7.78560 8.01089 8.45191 9.08541 9.65034 11.12841 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.019722 B = 0.006460 C = 0.006117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.388754 B = 4333.335015 C = 4576.245006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.093 3.907 3 H 0.077 0.923 4 C 0.027 3.973 5 C -0.495 4.495 6 H 0.062 0.938 7 C 0.052 3.948 8 N -0.902 5.902 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.530 5.530 14 C 0.068 3.932 15 C -0.558 4.558 16 H 0.147 0.853 17 C -0.139 4.139 18 S 2.402 3.598 19 O -0.950 6.950 20 O -0.944 6.944 21 C -0.549 4.549 22 H 0.150 0.850 23 C -0.139 4.139 24 C 0.069 3.931 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.023 0.977 29 H 0.021 0.979 30 H 0.258 0.742 31 H 0.094 0.906 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.046 0.954 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.912 1.630 11.885 12.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.014 4.014 3 H 0.095 0.905 4 C -0.010 4.010 5 C -0.534 4.534 6 H 0.080 0.920 7 C -0.148 4.148 8 N -0.542 5.542 9 Si 0.717 3.283 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.253 5.253 14 C -0.062 4.062 15 C -0.668 4.668 16 H 0.165 0.835 17 C -0.197 4.197 18 S 2.587 3.413 19 O -0.948 6.948 20 O -0.942 6.942 21 C -0.661 4.661 22 H 0.168 0.832 23 C -0.198 4.198 24 C -0.060 4.060 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.041 0.959 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.623 1.111 12.505 13.378 hybrid contribution 0.655 0.403 -0.850 1.146 sum -3.967 1.514 11.655 12.405 Atomic orbital electron populations 1.22583 0.99139 1.01767 1.01237 1.21932 0.90403 0.98396 0.90661 0.90512 1.19266 0.96576 0.95331 0.89790 1.21151 0.91409 1.33914 1.06887 0.92000 1.25002 0.98035 0.95846 0.95882 1.69946 1.35235 1.37133 1.11897 0.86656 0.86376 0.78365 0.76925 1.20862 1.21553 1.19998 1.61279 1.60526 1.01463 1.02039 1.21868 0.96028 0.99809 0.88460 1.29994 1.11606 1.21224 1.04007 0.83527 1.21572 1.03074 1.00872 0.94228 1.08691 0.75489 0.78709 0.78440 1.93542 1.61255 1.75681 1.64276 1.93525 1.34133 1.86154 1.80346 1.29940 1.10786 1.06012 1.19325 0.83231 1.21574 1.01299 0.92010 1.04923 1.21908 0.93653 0.89200 1.01262 0.93817 0.92046 0.92629 0.95915 0.96095 0.93203 0.88784 0.93364 0.91028 0.91221 0.90006 0.91136 0.89514 0.91316 0.93563 0.86759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.89 8.55 37.15 0.32 -2.57 16 2 C 0.09 1.68 2.26 -67.71 -0.15 1.53 16 3 H 0.08 1.39 7.82 -51.93 -0.41 0.98 16 4 C 0.03 0.63 4.35 -27.88 -0.12 0.51 16 5 C -0.50 -12.92 8.79 -34.44 -0.30 -13.22 16 6 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -25.97 13.29 55.43 0.74 -25.23 16 9 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.53 -8.81 4.02 -227.13 -0.91 -9.72 16 14 C 0.07 0.93 4.13 -3.96 -0.02 0.91 16 15 C -0.56 -7.12 3.23 -26.64 -0.09 -7.21 16 16 H 0.15 1.80 8.14 -51.93 -0.42 1.37 16 17 C -0.14 -1.47 9.19 37.16 0.34 -1.13 16 18 S 2.40 35.10 4.12 -107.50 -0.44 34.66 16 19 O -0.95 -16.21 18.11 -57.81 -1.05 -17.26 16 20 O -0.94 -15.50 18.03 -57.81 -1.04 -16.54 16 21 C -0.55 -7.95 3.22 -26.64 -0.09 -8.04 16 22 H 0.15 2.18 8.14 -51.93 -0.42 1.76 16 23 C -0.14 -1.77 9.21 37.16 0.34 -1.43 16 24 C 0.07 1.09 3.44 -3.96 -0.01 1.07 16 25 H 0.04 0.59 7.12 -51.93 -0.37 0.22 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.84 6.72 -51.93 -0.35 0.49 16 28 H 0.02 0.57 8.14 -51.92 -0.42 0.15 16 29 H 0.02 0.51 6.11 -51.93 -0.32 0.19 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.09 1.19 7.76 -51.93 -0.40 0.79 16 32 H 0.05 0.63 7.23 -51.92 -0.38 0.25 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.68 7.06 -51.93 -0.37 0.31 16 40 H 0.11 2.03 5.80 -51.93 -0.30 1.73 16 LS Contribution 323.35 15.07 4.87 4.87 Total: -1.00 -31.78 323.35 -9.39 -41.17 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.66 Total: 0.13 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: 0.12 Total: -28.24 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: -0.18 Total: -34.96 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -2.09 Total: -33.80 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 35.10 SS G_CDS: -0.44 Total: 34.66 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.78 -9.39 -41.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411740507.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.770 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds