Wall clock time and date at job start Mon Mar 30 2020 02:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47522 * 2 1 4 4 C 1.53003 * 109.47544 * 239.99638 * 2 1 3 5 5 C 1.50693 * 109.47214 * 176.81477 * 4 2 1 6 6 H 1.07995 * 120.00575 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99534 * 179.72631 * 5 4 2 8 8 N 1.31508 * 120.00399 * 0.27921 * 7 5 4 9 9 Si 1.86802 * 119.99894 * 180.27720 * 7 5 4 10 10 H 1.48500 * 109.47332 * 89.99918 * 9 7 5 11 11 H 1.48501 * 109.47156 * 210.00260 * 9 7 5 12 12 H 1.48503 * 109.46985 * 330.00074 * 9 7 5 13 13 N 1.46905 * 109.47009 * 120.00002 * 2 1 3 14 14 C 1.46473 * 111.00171 * 289.08643 * 13 2 1 15 15 C 1.53178 * 109.90395 * 196.99683 * 14 13 2 16 16 H 1.09002 * 109.59696 * 57.28682 * 15 14 13 17 17 C 1.52996 * 109.60126 * 177.60646 * 15 14 13 18 18 S 1.81812 * 108.67683 * 297.36823 * 15 14 13 19 19 O 1.42104 * 108.70143 * 166.57330 * 18 15 14 20 20 O 1.42096 * 108.70084 * 297.91384 * 18 15 14 21 21 C 1.81812 * 101.02438 * 52.31418 * 18 15 14 22 22 H 1.09000 * 109.60010 * 67.43806 * 21 18 15 23 23 C 1.52995 * 109.60490 * 187.76077 * 21 18 15 24 24 C 1.46471 * 110.99943 * 54.94329 * 13 2 1 25 25 H 1.09004 * 109.47535 * 300.00526 * 1 2 3 26 26 H 1.08999 * 109.46919 * 60.00026 * 1 2 3 27 27 H 1.08999 * 109.47522 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46394 * 56.81278 * 4 2 1 29 29 H 1.09001 * 109.47102 * 296.82215 * 4 2 1 30 30 H 0.96999 * 120.00455 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.39864 * 317.13697 * 14 13 2 32 32 H 1.09007 * 109.39629 * 76.86280 * 14 13 2 33 33 H 1.09003 * 109.47244 * 60.00427 * 17 15 14 34 34 H 1.09006 * 109.46723 * 180.02562 * 17 15 14 35 35 H 1.09001 * 109.47068 * 300.00125 * 17 15 14 36 36 H 1.09002 * 109.47316 * 60.00026 * 23 21 18 37 37 H 1.08998 * 109.47234 * 179.97438 * 23 21 18 38 38 H 1.09006 * 109.47244 * 300.00219 * 23 21 18 39 39 H 1.08999 * 109.39968 * 283.13077 * 24 13 2 40 40 H 1.08998 * 109.39860 * 42.87167 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5449 -0.6533 -1.2892 6 1 4.0837 -0.1467 -0.5023 7 6 4.2342 -1.2432 -2.3275 8 7 3.5782 -1.8605 -3.2856 9 14 6.1001 -1.1656 -2.3732 10 1 6.6620 -2.3412 -1.6608 11 1 6.5615 -1.1750 -3.7846 12 1 6.5600 0.0811 -1.7103 13 7 2.0196 -0.6925 1.1995 14 6 1.7730 0.1046 2.4033 15 6 2.6411 -0.4093 3.5560 16 1 3.6912 -0.3762 3.2657 17 6 2.4225 0.4648 4.7924 18 16 2.1605 -2.1230 3.9276 19 8 3.1517 -2.7028 4.7647 20 8 0.8025 -2.1348 4.3457 21 6 2.2736 -2.8810 2.2789 22 1 3.3152 -2.9065 1.9588 23 6 1.7173 -4.3054 2.3296 24 6 1.4540 -2.0402 1.2951 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6307 -0.2415 -2.1383 29 1 1.7240 -1.7641 -1.2211 30 1 4.0631 -2.2758 -4.0158 31 1 2.0174 1.1479 2.2031 32 1 0.7213 0.0272 2.6796 33 1 1.3730 0.4257 5.0842 34 1 3.0415 0.0975 5.6110 35 1 2.6977 1.4943 4.5629 36 1 0.6741 -4.2770 2.6444 37 1 1.7857 -4.7576 1.3402 38 1 2.2953 -4.8962 3.0403 39 1 0.4235 -1.9765 1.6444 40 1 1.4734 -2.5115 0.3125 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411740507.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:23 Heat of formation + Delta-G solvation = -97.462141 kcal Electronic energy + Delta-G solvation = -21140.854102 eV Core-core repulsion = 18081.764915 eV Total energy + Delta-G solvation = -3059.089187 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.18269 -38.05212 -37.15132 -35.80496 -35.37858 -34.25851 -31.38403 -29.16470 -27.89300 -26.30783 -24.98335 -23.24472 -22.77291 -20.54762 -19.74945 -18.33036 -17.90489 -17.76779 -16.97816 -16.74042 -16.54174 -16.04281 -15.18332 -14.76866 -14.66107 -14.21808 -14.05485 -13.91763 -13.79748 -13.63478 -13.43665 -13.31275 -13.21617 -13.13558 -13.01114 -12.66268 -12.54689 -12.51343 -12.45514 -12.28135 -12.13377 -11.76217 -11.46300 -11.08575 -10.99834 -10.81894 -10.43769 -9.12779 -8.07881 -6.11423 -0.98032 1.43048 1.44666 1.53657 1.67863 2.48365 2.55914 2.69386 3.08834 3.28349 3.45240 3.64962 3.72019 3.99810 4.03395 4.10093 4.27767 4.40038 4.43884 4.51775 4.60559 4.63470 4.66805 4.80777 4.83671 4.89136 4.98786 5.07148 5.07662 5.13953 5.20532 5.27271 5.52350 5.71057 5.92178 6.18796 6.28422 6.46916 7.03687 7.54535 9.03914 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.019722 B = 0.006460 C = 0.006117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.388754 B = 4333.335015 C = 4576.245006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.102 3.898 3 H 0.080 0.920 4 C 0.031 3.969 5 C -0.495 4.495 6 H 0.065 0.935 7 C -0.003 4.003 8 N -0.939 5.939 9 Si 0.948 3.052 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.265 1.265 13 N -0.546 5.546 14 C 0.065 3.935 15 C -0.543 4.543 16 H 0.154 0.846 17 C -0.145 4.145 18 S 2.409 3.591 19 O -0.978 6.978 20 O -0.963 6.963 21 C -0.551 4.551 22 H 0.144 0.856 23 C -0.146 4.146 24 C 0.071 3.929 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.052 0.948 28 H -0.004 1.004 29 H 0.002 0.998 30 H 0.257 0.743 31 H 0.111 0.889 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.698 2.935 13.480 14.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.006 4.006 3 H 0.099 0.901 4 C -0.007 4.007 5 C -0.534 4.534 6 H 0.083 0.917 7 C -0.199 4.199 8 N -0.582 5.582 9 Si 0.774 3.226 10 H -0.206 1.206 11 H -0.218 1.218 12 H -0.189 1.189 13 N -0.270 5.270 14 C -0.064 4.064 15 C -0.656 4.656 16 H 0.172 0.828 17 C -0.203 4.203 18 S 2.596 3.404 19 O -0.975 6.975 20 O -0.960 6.960 21 C -0.662 4.662 22 H 0.162 0.838 23 C -0.204 4.204 24 C -0.058 4.058 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.014 0.986 29 H 0.021 0.979 30 H 0.066 0.934 31 H 0.130 0.870 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.415 2.399 14.125 14.993 hybrid contribution 0.569 0.027 -1.346 1.462 sum -3.845 2.426 12.779 13.564 Atomic orbital electron populations 1.22493 0.96933 1.02072 1.02597 1.21631 0.92147 0.97621 0.89155 0.90145 1.19145 0.95234 0.94687 0.91596 1.21534 0.93001 1.32590 1.06269 0.91721 1.25778 1.02237 0.95993 0.95895 1.70074 1.36783 1.38603 1.12703 0.85707 0.81493 0.78653 0.76705 1.20588 1.21778 1.18885 1.61155 1.61156 1.01931 1.02713 1.22002 0.97003 1.00176 0.87220 1.29898 1.11797 1.19152 1.04795 0.82811 1.21721 1.03783 1.01641 0.93191 1.08403 0.74638 0.79491 0.77834 1.93505 1.61792 1.76997 1.65188 1.93495 1.34995 1.86799 1.80723 1.29950 1.10345 1.06875 1.19062 0.83784 1.21678 1.02040 0.91286 1.05438 1.21835 0.94708 0.89036 1.00258 0.91122 0.91991 0.92896 0.98615 0.97933 0.93448 0.87038 0.92109 0.90479 0.90515 0.87669 0.90231 0.89411 0.90213 0.92228 0.89359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.27 8.55 71.98 0.62 -4.66 16 2 C 0.10 3.57 2.26 44.91 0.10 3.67 16 3 H 0.08 2.75 7.82 -2.39 -0.02 2.73 16 4 C 0.03 1.44 4.35 29.85 0.13 1.57 16 5 C -0.50 -25.89 8.79 25.60 0.23 -25.67 16 6 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 7 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 8 N -0.94 -55.25 13.29 21.45 0.28 -54.97 16 9 Si 0.95 43.48 29.54 68.60 2.03 45.51 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 12 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 13 N -0.55 -17.27 4.02 -872.52 -3.51 -20.78 16 14 C 0.06 1.57 4.13 86.44 0.36 1.93 16 15 C -0.54 -12.35 3.23 30.65 0.10 -12.25 16 16 H 0.15 3.34 8.14 -2.39 -0.02 3.32 16 17 C -0.14 -2.56 9.19 71.98 0.66 -1.90 16 18 S 2.41 66.70 4.12 -56.49 -0.23 66.47 16 19 O -0.98 -32.27 18.11 -127.39 -2.31 -34.57 16 20 O -0.96 -29.93 18.03 -127.39 -2.30 -32.22 16 21 C -0.55 -15.60 3.22 30.65 0.10 -15.50 16 22 H 0.14 4.19 8.14 -2.39 -0.02 4.18 16 23 C -0.15 -3.64 9.21 71.98 0.66 -2.98 16 24 C 0.07 2.19 3.44 86.45 0.30 2.48 16 25 H 0.07 1.67 7.12 -2.39 -0.02 1.65 16 26 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.05 1.55 6.72 -2.39 -0.02 1.53 16 28 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 29 H 0.00 0.13 6.11 -2.39 -0.01 0.11 16 30 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 31 H 0.11 2.37 7.76 -2.39 -0.02 2.35 16 32 H 0.06 1.36 7.23 -2.38 -0.02 1.34 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 37 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.06 1.66 7.06 -2.39 -0.02 1.65 16 40 H 0.09 3.20 5.80 -2.39 -0.01 3.19 16 Total: -1.00 -67.61 323.35 -1.32 -68.93 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 1.00 Total: 14.66 kcal Atomic # 6 Polarization: -56.72 SS G_CDS: 3.71 Total: -53.01 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -3.23 Total: -75.75 kcal Atomic # 8 Polarization: -62.19 SS G_CDS: -4.60 Total: -66.80 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 66.70 SS G_CDS: -0.23 Total: 66.47 kcal Total: -67.61 -1.32 -68.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411740507.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.532 kcal (2) G-P(sol) polarization free energy of solvation -67.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds