Wall clock time and date at job start Mon Mar 30 2020 02:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.99110 * 2 1 4 4 C 1.54327 * 109.99195 * 238.96231 * 2 1 3 5 5 H 1.08999 * 110.52140 * 336.97010 * 4 2 1 6 6 C 1.52996 * 110.85121 * 100.19635 * 4 2 1 7 7 C 1.55160 * 103.01821 * 218.66323 * 4 2 1 8 8 H 1.09004 * 111.00455 * 277.22920 * 7 4 2 9 9 C 1.52997 * 111.00673 * 153.38439 * 7 4 2 10 10 C 1.54903 * 101.58296 * 35.30644 * 7 4 2 11 11 N 1.47022 * 109.88261 * 121.08866 * 2 1 3 12 12 S 1.65599 * 125.65040 * 298.40045 * 11 2 1 13 13 O 1.42105 * 104.27655 * 153.64269 * 12 11 2 14 14 O 1.42101 * 104.27764 * 25.78706 * 12 11 2 15 15 C 1.81395 * 104.44748 * 269.71574 * 12 11 2 16 16 C 1.52999 * 109.46986 * 180.02562 * 15 12 11 17 17 C 1.50700 * 109.47535 * 180.02562 * 16 15 12 18 18 H 1.08006 * 119.99840 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00463 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00062 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00103 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47395 * 89.99885 * 21 19 17 23 23 H 1.48504 * 109.47218 * 209.99622 * 21 19 17 24 24 H 1.48500 * 109.47369 * 329.99411 * 21 19 17 25 25 H 1.09001 * 109.47789 * 300.35776 * 1 2 3 26 26 H 1.09000 * 109.47660 * 60.36511 * 1 2 3 27 27 H 1.09004 * 109.46863 * 180.35709 * 1 2 3 28 28 H 1.09005 * 109.47310 * 175.14062 * 6 4 2 29 29 H 1.08997 * 109.47200 * 295.14171 * 6 4 2 30 30 H 1.09009 * 109.47358 * 55.14393 * 6 4 2 31 31 H 1.09007 * 109.46954 * 306.35095 * 9 7 4 32 32 H 1.09000 * 109.47237 * 66.34732 * 9 7 4 33 33 H 1.08993 * 109.47360 * 186.35055 * 9 7 4 34 34 H 1.09000 * 110.37146 * 204.15374 * 10 7 4 35 35 H 1.08995 * 110.46096 * 81.87717 * 10 7 4 36 36 H 1.09003 * 109.47393 * 299.99669 * 15 12 11 37 37 H 1.08994 * 109.47678 * 60.00285 * 15 12 11 38 38 H 1.09004 * 109.47080 * 299.99725 * 16 15 12 39 39 H 1.09005 * 109.47285 * 59.99790 * 16 15 12 40 40 H 0.96996 * 119.99792 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0576 -0.7478 -1.2426 5 1 1.3054 -1.4407 -1.6196 6 6 2.4816 0.2387 -2.3325 7 6 3.2864 -1.5183 -0.6913 8 1 4.1670 -0.8767 -0.6578 9 6 3.5593 -2.7776 -1.5161 10 6 2.8100 -1.8824 0.7369 11 7 2.0300 -0.7139 1.1840 12 16 1.7564 -0.2813 2.7589 13 8 1.8554 -1.5019 3.4799 14 8 0.5370 0.4470 2.7155 15 6 3.1393 0.8169 3.1734 16 6 2.9990 1.2893 4.6218 17 6 4.1475 2.2022 4.9661 18 1 4.9024 2.4230 4.2259 19 6 4.2353 2.7546 6.2263 20 7 3.3164 2.4853 7.1278 21 14 5.6594 3.8856 6.6532 22 1 5.2902 5.2883 6.3347 23 1 5.9655 3.7710 8.1018 24 1 6.8547 3.4966 5.8625 25 1 -0.3635 0.5194 0.8867 26 1 -0.3634 0.5081 -0.8932 27 1 -0.3633 -1.0277 0.0064 28 1 2.9294 -0.3075 -3.1628 29 1 1.6083 0.7863 -2.6868 30 1 3.2095 0.9402 -1.9246 31 1 2.6524 -3.3799 -1.5706 32 1 3.8675 -2.4933 -2.5223 33 1 4.3524 -3.3568 -1.0433 34 1 3.6655 -2.0410 1.3934 35 1 2.1807 -2.7720 0.7135 36 1 4.0793 0.2773 3.0571 37 1 3.1307 1.6795 2.5072 38 1 2.0590 1.8287 4.7386 39 1 3.0079 0.4264 5.2879 40 1 3.3780 2.8743 8.0143 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416652696.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:31 Heat of formation + Delta-G solvation = -94.202150 kcal Electronic energy + Delta-G solvation = -20384.151503 eV Core-core repulsion = 17325.203680 eV Total energy + Delta-G solvation = -3058.947824 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.37352 -36.60798 -35.41120 -33.88359 -33.19739 -32.20839 -31.14531 -28.78021 -25.94585 -25.47955 -24.27224 -21.67405 -20.84153 -20.30005 -18.40886 -17.32499 -16.61199 -16.22427 -15.37691 -14.98351 -14.55743 -14.39004 -14.03250 -13.69613 -13.61386 -13.31849 -13.01593 -12.59711 -12.50505 -12.46590 -12.18613 -11.77007 -11.74399 -11.61224 -11.53237 -11.32605 -11.08046 -11.01753 -10.95010 -10.82526 -10.69141 -10.42648 -10.36939 -10.18469 -9.74714 -9.30839 -8.70042 -8.50013 -6.12058 -4.17652 0.77251 3.08412 3.26175 3.32317 3.35159 4.23977 4.30520 4.36647 4.41630 4.60960 4.77334 5.06233 5.20018 5.23040 5.26096 5.29720 5.30884 5.40626 5.43527 5.57552 5.61490 5.68241 5.73334 5.77127 5.82331 5.86712 5.95801 5.97466 6.12747 6.21799 6.38461 6.50691 6.56937 6.61208 7.30469 7.36714 7.80919 8.18180 8.85677 9.47065 10.99039 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.024719 B = 0.004748 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.471602 B = 5896.070585 C = 6193.151016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.153 3.847 3 H 0.073 0.927 4 C -0.094 4.094 5 H 0.084 0.916 6 C -0.142 4.142 7 C -0.103 4.103 8 H 0.086 0.914 9 C -0.140 4.140 10 C 0.127 3.873 11 N -1.015 6.015 12 S 2.604 3.396 13 O -0.963 6.963 14 O -0.959 6.959 15 C -0.590 4.590 16 C 0.028 3.972 17 C -0.520 4.520 18 H 0.061 0.939 19 C 0.058 3.942 20 N -0.891 5.891 21 Si 0.900 3.100 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 H 0.093 0.907 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.777 -7.306 -19.263 20.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.047 3.953 3 H 0.091 0.909 4 C -0.114 4.114 5 H 0.102 0.898 6 C -0.200 4.200 7 C -0.123 4.123 8 H 0.104 0.896 9 C -0.198 4.198 10 C 0.001 3.999 11 N -0.851 5.851 12 S 2.704 3.296 13 O -0.954 6.954 14 O -0.950 6.950 15 C -0.723 4.723 16 C -0.011 4.011 17 C -0.559 4.559 18 H 0.079 0.921 19 C -0.145 4.145 20 N -0.529 5.529 21 Si 0.727 3.273 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.198 1.198 25 H 0.111 0.889 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.614 -7.573 -18.464 20.021 hybrid contribution 1.345 0.949 0.149 1.653 sum -0.268 -6.623 -18.314 19.477 Atomic orbital electron populations 1.22532 0.94797 1.02709 1.04126 1.21336 0.94315 0.95454 0.84179 0.90855 1.22369 0.97203 0.97312 0.94467 0.89777 1.21769 1.01476 0.98793 0.97929 1.22476 0.98108 0.97342 0.94339 0.89582 1.21698 1.01855 0.96679 0.99575 1.21962 0.94735 0.88230 0.94927 1.58942 1.66906 1.37054 1.22214 1.05324 0.77304 0.75662 0.71267 1.93535 1.87878 1.43677 1.70313 1.93487 1.41821 1.74880 1.84773 1.30492 1.17074 1.14098 1.10626 1.18964 0.99564 0.97767 0.84806 1.21003 1.08734 1.28439 0.97758 0.92081 1.25067 0.96486 0.96637 0.96274 1.69957 1.34060 1.43959 1.04901 0.86468 0.82231 0.80866 0.77705 1.20449 1.20982 1.19774 0.88859 0.92037 0.92612 0.92337 0.92367 0.92251 0.92427 0.92349 0.92260 0.90764 0.91542 0.86408 0.86347 0.94848 0.94905 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 9.00 37.16 0.33 -1.98 16 2 C 0.15 1.88 3.26 -66.95 -0.22 1.66 16 3 H 0.07 0.86 7.79 -51.92 -0.40 0.46 16 4 C -0.09 -0.87 2.54 -88.78 -0.23 -1.10 16 5 H 0.08 0.74 7.71 -51.93 -0.40 0.34 16 6 C -0.14 -1.09 9.15 37.16 0.34 -0.75 16 7 C -0.10 -0.95 3.09 -88.47 -0.27 -1.22 16 8 H 0.09 0.78 8.05 -51.93 -0.42 0.36 16 9 C -0.14 -1.03 9.30 37.16 0.35 -0.68 16 10 C 0.13 1.53 6.36 -2.53 -0.02 1.51 16 11 N -1.02 -14.61 3.33 -104.42 -0.35 -14.96 16 12 S 2.60 48.79 5.64 -107.50 -0.61 48.18 16 13 O -0.96 -20.77 17.61 -57.54 -1.01 -21.78 16 14 O -0.96 -19.93 15.00 -57.54 -0.86 -20.80 16 15 C -0.59 -11.66 6.12 37.16 0.23 -11.43 16 16 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 17 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 18 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 21 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 H 0.09 1.45 5.65 -51.93 -0.29 1.15 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.47 8.10 -51.92 -0.42 0.05 16 31 H 0.06 0.41 8.11 -51.93 -0.42 -0.01 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.77 8.04 -51.93 -0.42 0.36 16 36 H 0.12 2.12 8.14 -51.92 -0.42 1.69 16 37 H 0.12 2.12 8.14 -51.93 -0.42 1.70 16 38 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 333.14 15.07 5.02 5.02 Total: -1.00 -33.67 333.14 -9.10 -42.76 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -6.97 Total: -2.06 kcal Atomic # 6 Polarization: -26.67 SS G_CDS: -0.04 Total: -26.71 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.39 Total: -40.92 kcal Atomic # 8 Polarization: -40.70 SS G_CDS: -1.88 Total: -42.58 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 48.79 SS G_CDS: -0.61 Total: 48.18 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.67 -9.10 -42.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416652696.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.439 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds