Wall clock time and date at job start Mon Mar 30 2020 02:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.99110 * 2 1 4 4 C 1.54327 * 109.99195 * 238.96231 * 2 1 3 5 5 H 1.08999 * 110.52140 * 336.97010 * 4 2 1 6 6 C 1.52996 * 110.85121 * 100.19635 * 4 2 1 7 7 C 1.55160 * 103.01821 * 218.66323 * 4 2 1 8 8 H 1.09004 * 111.00455 * 277.22920 * 7 4 2 9 9 C 1.52997 * 111.00673 * 153.38439 * 7 4 2 10 10 C 1.54903 * 101.58296 * 35.30644 * 7 4 2 11 11 N 1.47022 * 109.88261 * 121.08866 * 2 1 3 12 12 S 1.65599 * 125.65040 * 298.40045 * 11 2 1 13 13 O 1.42105 * 104.27655 * 153.64269 * 12 11 2 14 14 O 1.42101 * 104.27764 * 25.78706 * 12 11 2 15 15 C 1.81395 * 104.44748 * 269.71574 * 12 11 2 16 16 C 1.52999 * 109.46986 * 180.02562 * 15 12 11 17 17 C 1.50700 * 109.47535 * 180.02562 * 16 15 12 18 18 H 1.08006 * 119.99840 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00463 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00062 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00103 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47395 * 89.99885 * 21 19 17 23 23 H 1.48504 * 109.47218 * 209.99622 * 21 19 17 24 24 H 1.48500 * 109.47369 * 329.99411 * 21 19 17 25 25 H 1.09001 * 109.47789 * 300.35776 * 1 2 3 26 26 H 1.09000 * 109.47660 * 60.36511 * 1 2 3 27 27 H 1.09004 * 109.46863 * 180.35709 * 1 2 3 28 28 H 1.09005 * 109.47310 * 175.14062 * 6 4 2 29 29 H 1.08997 * 109.47200 * 295.14171 * 6 4 2 30 30 H 1.09009 * 109.47358 * 55.14393 * 6 4 2 31 31 H 1.09007 * 109.46954 * 306.35095 * 9 7 4 32 32 H 1.09000 * 109.47237 * 66.34732 * 9 7 4 33 33 H 1.08993 * 109.47360 * 186.35055 * 9 7 4 34 34 H 1.09000 * 110.37146 * 204.15374 * 10 7 4 35 35 H 1.08995 * 110.46096 * 81.87717 * 10 7 4 36 36 H 1.09003 * 109.47393 * 299.99669 * 15 12 11 37 37 H 1.08994 * 109.47678 * 60.00285 * 15 12 11 38 38 H 1.09004 * 109.47080 * 299.99725 * 16 15 12 39 39 H 1.09005 * 109.47285 * 59.99790 * 16 15 12 40 40 H 0.96996 * 119.99792 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0576 -0.7478 -1.2426 5 1 1.3054 -1.4407 -1.6196 6 6 2.4816 0.2387 -2.3325 7 6 3.2864 -1.5183 -0.6913 8 1 4.1670 -0.8767 -0.6578 9 6 3.5593 -2.7776 -1.5161 10 6 2.8100 -1.8824 0.7369 11 7 2.0300 -0.7139 1.1840 12 16 1.7564 -0.2813 2.7589 13 8 1.8554 -1.5019 3.4799 14 8 0.5370 0.4470 2.7155 15 6 3.1393 0.8169 3.1734 16 6 2.9990 1.2893 4.6218 17 6 4.1475 2.2022 4.9661 18 1 4.9024 2.4230 4.2259 19 6 4.2353 2.7546 6.2263 20 7 3.3164 2.4853 7.1278 21 14 5.6594 3.8856 6.6532 22 1 5.2902 5.2883 6.3347 23 1 5.9655 3.7710 8.1018 24 1 6.8547 3.4966 5.8625 25 1 -0.3635 0.5194 0.8867 26 1 -0.3634 0.5081 -0.8932 27 1 -0.3633 -1.0277 0.0064 28 1 2.9294 -0.3075 -3.1628 29 1 1.6083 0.7863 -2.6868 30 1 3.2095 0.9402 -1.9246 31 1 2.6524 -3.3799 -1.5706 32 1 3.8675 -2.4933 -2.5223 33 1 4.3524 -3.3568 -1.0433 34 1 3.6655 -2.0410 1.3934 35 1 2.1807 -2.7720 0.7135 36 1 4.0793 0.2773 3.0571 37 1 3.1307 1.6795 2.5072 38 1 2.0590 1.8287 4.7386 39 1 3.0079 0.4264 5.2879 40 1 3.3780 2.8743 8.0143 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416652696.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:31 Heat of formation + Delta-G solvation = -116.991629 kcal Electronic energy + Delta-G solvation = -20385.139729 eV Core-core repulsion = 17325.203680 eV Total energy + Delta-G solvation = -3059.936050 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.27164 -38.22581 -37.03847 -35.92530 -34.08745 -33.16759 -33.05943 -29.57647 -27.64118 -26.68658 -25.13082 -23.57401 -21.86004 -21.06186 -19.84573 -18.95613 -18.23327 -17.53024 -17.02055 -16.55604 -16.31856 -15.25043 -15.14023 -14.85645 -14.67777 -14.47214 -14.44987 -13.84310 -13.74965 -13.69275 -13.22795 -13.15266 -13.05356 -12.94987 -12.85206 -12.72442 -12.49579 -12.35067 -12.28265 -12.18870 -12.04869 -11.75078 -11.55637 -11.47093 -11.20119 -10.99564 -10.66851 -9.92066 -8.28017 -6.42778 -0.75377 1.39589 1.41809 1.52987 1.73834 2.36702 2.83165 3.04834 3.06555 3.50865 3.67430 3.87729 3.98310 4.07310 4.20398 4.35655 4.48200 4.55414 4.63363 4.65528 4.69859 4.72592 4.77878 4.84434 5.04147 5.08627 5.19203 5.21131 5.22335 5.25039 5.28560 5.33683 5.46040 5.52096 5.59969 5.62437 5.65574 6.03446 6.70486 7.27668 8.84422 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.024719 B = 0.004748 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.471602 B = 5896.070585 C = 6193.151016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.141 3.859 3 H 0.079 0.921 4 C -0.085 4.085 5 H 0.093 0.907 6 C -0.140 4.140 7 C -0.094 4.094 8 H 0.091 0.909 9 C -0.137 4.137 10 C 0.112 3.888 11 N -1.010 6.010 12 S 2.626 3.374 13 O -0.996 6.996 14 O -0.984 6.984 15 C -0.588 4.588 16 C 0.021 3.979 17 C -0.541 4.541 18 H 0.075 0.925 19 C -0.003 4.003 20 N -0.935 5.935 21 Si 0.976 3.024 22 H -0.269 1.269 23 H -0.282 1.282 24 H -0.258 1.258 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.006 0.994 39 H 0.005 0.995 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.882 -7.123 -21.977 23.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.035 3.965 3 H 0.097 0.903 4 C -0.105 4.105 5 H 0.111 0.889 6 C -0.197 4.197 7 C -0.114 4.114 8 H 0.110 0.890 9 C -0.195 4.195 10 C -0.012 4.012 11 N -0.848 5.848 12 S 2.726 3.274 13 O -0.987 6.987 14 O -0.974 6.974 15 C -0.719 4.719 16 C -0.017 4.017 17 C -0.579 4.579 18 H 0.093 0.907 19 C -0.202 4.202 20 N -0.574 5.574 21 Si 0.799 3.201 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.181 1.181 25 H 0.079 0.921 26 H 0.107 0.893 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.025 0.975 39 H 0.023 0.977 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.053 -7.386 -21.180 22.431 hybrid contribution 0.768 0.838 0.927 1.467 sum 0.821 -6.548 -20.254 21.302 Atomic orbital electron populations 1.22520 0.95280 1.02605 1.03855 1.21696 0.94120 0.96161 0.84473 0.90307 1.22365 0.97269 0.97489 0.93330 0.88866 1.21769 1.01795 0.98491 0.97651 1.22483 0.98132 0.98392 0.92437 0.89021 1.21689 1.02157 0.95635 0.99975 1.22311 0.94622 0.87355 0.96929 1.58557 1.67263 1.37920 1.21079 1.04335 0.76393 0.74603 0.72100 1.93484 1.88094 1.44836 1.72244 1.93463 1.42895 1.75380 1.85687 1.30387 1.19029 1.15607 1.06921 1.18816 0.98105 0.96414 0.88408 1.21501 1.09415 1.28625 0.98404 0.90694 1.26136 0.99486 0.98369 0.96176 1.70106 1.36379 1.45445 1.05478 0.85286 0.78716 0.78579 0.77512 1.19469 1.20713 1.18143 0.92125 0.89314 0.92592 0.90650 0.91779 0.92493 0.92222 0.90746 0.91946 0.90697 0.91277 0.84461 0.84318 0.97528 0.97700 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.46 9.00 71.98 0.65 -3.82 16 2 C 0.14 3.21 3.26 45.34 0.15 3.36 16 3 H 0.08 1.71 7.79 -2.38 -0.02 1.69 16 4 C -0.08 -1.31 2.54 -9.60 -0.02 -1.34 16 5 H 0.09 1.32 7.71 -2.39 -0.02 1.30 16 6 C -0.14 -1.63 9.15 71.98 0.66 -0.97 16 7 C -0.09 -1.47 3.09 -9.40 -0.03 -1.50 16 8 H 0.09 1.36 8.05 -2.39 -0.02 1.34 16 9 C -0.14 -1.54 9.30 71.98 0.67 -0.87 16 10 C 0.11 2.53 6.36 86.85 0.55 3.08 16 11 N -1.01 -28.23 3.33 -484.27 -1.61 -29.84 16 12 S 2.63 100.45 5.64 -56.49 -0.32 100.13 16 13 O -1.00 -44.21 17.61 -127.65 -2.25 -46.46 16 14 O -0.98 -42.31 15.00 -127.65 -1.92 -44.23 16 15 C -0.59 -23.38 6.12 71.98 0.44 -22.94 16 16 C 0.02 1.16 4.98 29.85 0.15 1.31 16 17 C -0.54 -30.54 9.11 25.60 0.23 -30.30 16 18 H 0.07 3.91 7.74 -2.91 -0.02 3.89 16 19 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 20 N -0.93 -57.58 13.29 21.45 0.28 -57.29 16 21 Si 0.98 43.59 29.54 68.60 2.03 45.62 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 24 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 25 H 0.06 1.90 5.65 -2.39 -0.01 1.88 16 26 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.71 8.10 -2.38 -0.02 0.69 16 31 H 0.06 0.66 8.11 -2.38 -0.02 0.64 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.52 8.04 -2.39 -0.02 1.50 16 36 H 0.14 4.85 8.14 -2.39 -0.02 4.83 16 37 H 0.14 4.88 8.14 -2.39 -0.02 4.86 16 38 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.00 0.27 8.14 -2.38 -0.02 0.25 16 40 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -74.52 333.14 1.11 -73.40 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.99 Total: 12.39 kcal Atomic # 6 Polarization: -57.63 SS G_CDS: 3.91 Total: -53.72 kcal Atomic # 7 Polarization: -85.81 SS G_CDS: -1.33 Total: -87.13 kcal Atomic # 8 Polarization: -86.52 SS G_CDS: -4.16 Total: -90.69 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 100.45 SS G_CDS: -0.32 Total: 100.13 kcal Total: -74.52 1.11 -73.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416652696.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.588 kcal (2) G-P(sol) polarization free energy of solvation -74.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds