Wall clock time and date at job start Mon Mar 30 2020 02:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 110.54080 * 2 1 4 4 C 1.54893 * 110.48759 * 237.38623 * 2 1 3 5 5 C 1.54889 * 102.74878 * 203.37980 * 4 2 1 6 6 C 1.54265 * 104.19791 * 37.94105 * 5 4 2 7 7 H 1.09000 * 110.07422 * 217.08514 * 6 5 4 8 8 N 1.46500 * 110.03096 * 95.67302 * 6 5 4 9 9 S 1.65606 * 119.99825 * 97.83313 * 8 6 5 10 10 O 1.42097 * 104.27560 * 308.93171 * 9 8 6 11 11 O 1.42091 * 104.27561 * 181.06907 * 9 8 6 12 12 C 1.81407 * 104.44700 * 64.99932 * 9 8 6 13 13 C 1.52996 * 109.46799 * 180.02562 * 12 9 8 14 14 C 1.52998 * 109.46929 * 180.02562 * 13 12 9 15 15 C 1.50706 * 109.47348 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99758 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00102 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47483 * 269.99808 * 19 17 15 21 21 H 1.48499 * 109.47134 * 30.00322 * 19 17 15 22 22 H 1.48507 * 109.46904 * 150.00145 * 19 17 15 23 23 C 1.53876 * 106.59678 * 336.39171 * 6 5 4 24 24 H 1.09006 * 109.46784 * 297.38595 * 1 2 3 25 25 H 1.08995 * 109.47255 * 57.38598 * 1 2 3 26 26 H 1.09001 * 109.46822 * 177.39241 * 1 2 3 27 27 H 1.08999 * 110.75131 * 321.69430 * 4 2 1 28 28 H 1.08996 * 110.75403 * 84.87488 * 4 2 1 29 29 H 1.09000 * 110.48144 * 279.26326 * 5 4 2 30 30 H 1.08995 * 110.48833 * 156.62350 * 5 4 2 31 31 H 0.96998 * 120.00233 * 277.83432 * 8 6 5 32 32 H 1.09000 * 109.46876 * 60.00006 * 12 9 8 33 33 H 1.09002 * 109.47096 * 299.99793 * 12 9 8 34 34 H 1.09000 * 109.47441 * 60.00303 * 13 12 9 35 35 H 1.09002 * 109.47087 * 299.99749 * 13 12 9 36 36 H 1.09001 * 109.47671 * 60.00109 * 14 13 12 37 37 H 1.09006 * 109.47297 * 299.99829 * 14 13 12 38 38 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 39 39 H 1.09001 * 110.03384 * 119.28784 * 23 6 5 40 40 H 1.09007 * 110.02677 * 240.66383 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0206 0.0000 4 6 2.0721 -0.7820 -1.2222 5 6 3.4907 -1.1980 -0.7600 6 6 3.3166 -1.5405 0.7341 7 1 4.1927 -1.2176 1.2965 8 7 3.1186 -2.9827 0.8985 9 16 4.3970 -3.9527 1.3076 10 8 5.4077 -3.6153 0.3674 11 8 3.8442 -5.2610 1.3513 12 6 4.8669 -3.4042 2.9716 13 6 6.0531 -4.2345 3.4662 14 6 6.4490 -3.7724 4.8699 15 6 7.6170 -4.5906 5.3574 16 1 8.0348 -5.3632 4.7289 17 6 8.1522 -4.3527 6.6055 18 7 7.6431 -3.4122 7.3710 19 14 9.5994 -5.3674 7.2100 20 1 9.0978 -6.5672 7.9271 21 1 10.4244 -5.7925 6.0507 22 1 10.4267 -4.5491 8.1327 23 6 2.0699 -0.7788 1.2172 24 1 -0.3633 0.4727 0.9126 25 1 -0.3633 0.5539 -0.8656 26 1 -0.3633 -1.0266 -0.0468 27 1 1.4580 -1.6601 -1.4222 28 1 2.1220 -0.1391 -2.1009 29 1 4.1897 -0.3707 -0.8827 30 1 3.8316 -2.0721 -1.3145 31 1 2.2387 -3.3695 0.7678 32 1 4.0233 -3.5356 3.6492 33 1 5.1482 -2.3516 2.9413 34 1 6.8966 -4.1027 2.7885 35 1 5.7722 -5.2873 3.4964 36 1 5.6055 -3.9045 5.5475 37 1 6.7298 -2.7195 4.8402 38 1 6.8914 -2.8856 7.0573 39 1 1.3176 -1.4822 1.5742 40 1 2.3411 -0.0863 2.0142 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444221201.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:54 Heat of formation + Delta-G solvation = -114.069551 kcal Electronic energy + Delta-G solvation = -19643.501673 eV Core-core repulsion = 16583.692334 eV Total energy + Delta-G solvation = -3059.809339 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.09884 -36.90182 -35.78733 -34.93317 -34.14591 -32.29451 -30.45984 -28.34592 -27.48678 -24.96980 -23.47504 -21.07810 -20.86011 -20.28022 -19.14761 -17.62423 -16.93928 -16.53852 -16.04942 -15.74089 -15.27185 -14.38939 -14.09607 -13.86995 -13.76339 -13.42670 -13.32740 -12.90742 -12.33976 -12.13896 -12.06500 -12.03597 -11.90933 -11.83883 -11.47595 -11.25678 -11.20634 -11.10009 -10.85809 -10.81005 -10.78141 -10.73537 -10.14570 -10.10217 -9.89404 -9.44107 -8.59095 -8.37372 -6.41581 -4.11356 0.41936 2.81491 3.42867 3.46353 3.62253 3.88183 4.22601 4.27286 4.34260 4.51313 4.54045 4.88758 4.96278 5.07109 5.08893 5.13511 5.20063 5.28992 5.32276 5.36371 5.39698 5.54168 5.60509 5.68792 5.77135 5.83693 5.85377 6.02703 6.13487 6.14320 6.16262 6.30931 6.70825 6.90396 7.25701 7.37752 8.12797 8.41073 8.82486 9.60977 10.99248 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.030928 B = 0.003631 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.111268 B = 7709.124514 C = 8174.898057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.076 0.924 4 C -0.120 4.120 5 C -0.139 4.139 6 C 0.147 3.853 7 H 0.087 0.913 8 N -1.117 6.117 9 S 2.601 3.399 10 O -0.959 6.959 11 O -0.965 6.965 12 C -0.613 4.613 13 C -0.098 4.098 14 C 0.017 3.983 15 C -0.607 4.607 16 H 0.052 0.948 17 C 0.015 3.985 18 N -0.913 5.913 19 Si 1.072 2.928 20 H -0.287 1.287 21 H -0.287 1.287 22 H -0.284 1.284 23 C -0.129 4.129 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.414 0.586 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.011 0.989 37 H 0.011 0.989 38 H 0.268 0.732 39 H 0.077 0.923 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.223 7.662 -15.195 22.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.095 0.905 4 C -0.158 4.158 5 C -0.179 4.179 6 C 0.040 3.960 7 H 0.105 0.895 8 N -0.874 5.874 9 S 2.696 3.304 10 O -0.949 6.949 11 O -0.955 6.955 12 C -0.745 4.745 13 C -0.138 4.138 14 C -0.021 4.021 15 C -0.645 4.645 16 H 0.070 0.930 17 C -0.188 4.188 18 N -0.549 5.549 19 Si 0.900 3.100 20 H -0.214 1.214 21 H -0.213 1.213 22 H -0.209 1.209 23 C -0.168 4.168 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.248 0.752 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.029 0.971 37 H 0.030 0.970 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.648 6.849 -14.462 20.397 hybrid contribution -1.610 0.558 -0.731 1.854 sum -14.257 7.407 -15.193 22.113 Atomic orbital electron populations 1.21808 0.94932 1.01847 1.01609 1.21993 0.95556 0.99391 0.94785 0.90526 1.22584 0.96183 0.99700 0.97313 1.22864 0.97202 1.02329 0.95462 1.21383 0.98585 0.79354 0.96723 0.89487 1.55878 1.26918 1.17766 1.86862 1.05282 0.73691 0.73721 0.77660 1.93577 1.58881 1.84088 1.58365 1.93576 1.77501 1.36570 1.87834 1.30590 1.10167 1.11577 1.22137 1.21350 0.92914 0.97860 1.01650 1.19189 0.96735 0.96555 0.89642 1.22102 1.17090 1.21143 1.04194 0.92952 1.25891 1.01774 0.97606 0.93565 1.70770 1.24684 1.20412 1.38998 0.83498 0.75301 0.75471 0.75706 1.21357 1.21340 1.20937 1.22620 0.96852 0.99237 0.98110 0.92665 0.92726 0.92593 0.91431 0.91556 0.90567 0.90189 0.75231 0.85378 0.85704 0.91394 0.91429 0.97051 0.97048 0.92144 0.90448 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.12 37.16 0.34 -0.56 16 2 C -0.10 -0.68 3.46 -88.96 -0.31 -0.99 16 3 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 4 C -0.12 -0.91 6.33 -24.74 -0.16 -1.07 16 5 C -0.14 -1.31 6.54 -25.07 -0.16 -1.47 16 6 C 0.15 1.40 3.34 -66.81 -0.22 1.17 16 7 H 0.09 0.80 7.22 -51.93 -0.37 0.43 16 8 N -1.12 -11.75 5.29 -3.94 -0.02 -11.77 16 9 S 2.60 37.89 5.38 -107.50 -0.58 37.31 16 10 O -0.96 -16.66 17.82 -57.54 -1.03 -17.69 16 11 O -0.96 -17.00 18.08 -57.54 -1.04 -18.04 16 12 C -0.61 -9.39 5.97 37.16 0.22 -9.17 16 13 C -0.10 -2.02 5.16 -26.73 -0.14 -2.16 16 14 C 0.02 0.43 4.28 -27.88 -0.12 0.31 16 15 C -0.61 -17.43 9.11 -34.44 -0.31 -17.75 16 16 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 17 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 18 N -0.91 -27.88 13.65 55.43 0.76 -27.13 16 19 Si 1.07 25.46 29.90 -169.99 -5.08 20.37 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C -0.13 -0.99 6.14 -25.61 -0.16 -1.15 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.35 8.12 -51.93 -0.42 -0.07 16 27 H 0.07 0.51 8.04 -51.93 -0.42 0.09 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 31 H 0.41 3.61 8.63 -34.47 -0.30 3.31 16 32 H 0.13 1.75 8.14 -51.92 -0.42 1.33 16 33 H 0.12 1.68 7.48 -51.92 -0.39 1.29 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.01 0.29 8.01 -51.93 -0.42 -0.12 16 37 H 0.01 0.29 8.01 -51.93 -0.42 -0.12 16 38 H 0.27 8.09 7.22 -40.82 -0.29 7.80 16 39 H 0.08 0.56 7.45 -51.93 -0.39 0.17 16 40 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 LS Contribution 335.58 15.07 5.06 5.06 Total: -1.00 -35.18 335.58 -9.89 -45.07 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.84 Total: -0.71 kcal Atomic # 6 Polarization: -31.36 SS G_CDS: -1.12 Total: -32.47 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.74 Total: -38.90 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -2.07 Total: -35.73 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.08 Total: 20.37 kcal Atomic # 16 Polarization: 37.89 SS G_CDS: -0.58 Total: 37.31 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.18 -9.89 -45.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444221201.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.002 kcal (2) G-P(sol) polarization free energy of solvation -35.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds