Wall clock time and date at job start Mon Mar 30 2020 02:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 110.54080 * 2 1 4 4 C 1.54893 * 110.48759 * 237.38623 * 2 1 3 5 5 C 1.54889 * 102.74878 * 203.37980 * 4 2 1 6 6 C 1.54265 * 104.19791 * 37.94105 * 5 4 2 7 7 H 1.09000 * 110.07422 * 217.08514 * 6 5 4 8 8 N 1.46500 * 110.03096 * 95.67302 * 6 5 4 9 9 S 1.65606 * 119.99825 * 97.83313 * 8 6 5 10 10 O 1.42097 * 104.27560 * 308.93171 * 9 8 6 11 11 O 1.42091 * 104.27561 * 181.06907 * 9 8 6 12 12 C 1.81407 * 104.44700 * 64.99932 * 9 8 6 13 13 C 1.52996 * 109.46799 * 180.02562 * 12 9 8 14 14 C 1.52998 * 109.46929 * 180.02562 * 13 12 9 15 15 C 1.50706 * 109.47348 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99758 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00102 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47483 * 269.99808 * 19 17 15 21 21 H 1.48499 * 109.47134 * 30.00322 * 19 17 15 22 22 H 1.48507 * 109.46904 * 150.00145 * 19 17 15 23 23 C 1.53876 * 106.59678 * 336.39171 * 6 5 4 24 24 H 1.09006 * 109.46784 * 297.38595 * 1 2 3 25 25 H 1.08995 * 109.47255 * 57.38598 * 1 2 3 26 26 H 1.09001 * 109.46822 * 177.39241 * 1 2 3 27 27 H 1.08999 * 110.75131 * 321.69430 * 4 2 1 28 28 H 1.08996 * 110.75403 * 84.87488 * 4 2 1 29 29 H 1.09000 * 110.48144 * 279.26326 * 5 4 2 30 30 H 1.08995 * 110.48833 * 156.62350 * 5 4 2 31 31 H 0.96998 * 120.00233 * 277.83432 * 8 6 5 32 32 H 1.09000 * 109.46876 * 60.00006 * 12 9 8 33 33 H 1.09002 * 109.47096 * 299.99793 * 12 9 8 34 34 H 1.09000 * 109.47441 * 60.00303 * 13 12 9 35 35 H 1.09002 * 109.47087 * 299.99749 * 13 12 9 36 36 H 1.09001 * 109.47671 * 60.00109 * 14 13 12 37 37 H 1.09006 * 109.47297 * 299.99829 * 14 13 12 38 38 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 39 39 H 1.09001 * 110.03384 * 119.28784 * 23 6 5 40 40 H 1.09007 * 110.02677 * 240.66383 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0206 0.0000 4 6 2.0721 -0.7820 -1.2222 5 6 3.4907 -1.1980 -0.7600 6 6 3.3166 -1.5405 0.7341 7 1 4.1927 -1.2176 1.2965 8 7 3.1186 -2.9827 0.8985 9 16 4.3970 -3.9527 1.3076 10 8 5.4077 -3.6153 0.3674 11 8 3.8442 -5.2610 1.3513 12 6 4.8669 -3.4042 2.9716 13 6 6.0531 -4.2345 3.4662 14 6 6.4490 -3.7724 4.8699 15 6 7.6170 -4.5906 5.3574 16 1 8.0348 -5.3632 4.7289 17 6 8.1522 -4.3527 6.6055 18 7 7.6431 -3.4122 7.3710 19 14 9.5994 -5.3674 7.2100 20 1 9.0978 -6.5672 7.9271 21 1 10.4244 -5.7925 6.0507 22 1 10.4267 -4.5491 8.1327 23 6 2.0699 -0.7788 1.2172 24 1 -0.3633 0.4727 0.9126 25 1 -0.3633 0.5539 -0.8656 26 1 -0.3633 -1.0266 -0.0468 27 1 1.4580 -1.6601 -1.4222 28 1 2.1220 -0.1391 -2.1009 29 1 4.1897 -0.3707 -0.8827 30 1 3.8316 -2.0721 -1.3145 31 1 2.2387 -3.3695 0.7678 32 1 4.0233 -3.5356 3.6492 33 1 5.1482 -2.3516 2.9413 34 1 6.8966 -4.1027 2.7885 35 1 5.7722 -5.2873 3.4964 36 1 5.6055 -3.9045 5.5475 37 1 6.7298 -2.7195 4.8402 38 1 6.8914 -2.8856 7.0573 39 1 1.3176 -1.4822 1.5742 40 1 2.3411 -0.0863 2.0142 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444221201.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:53 Heat of formation + Delta-G solvation = -138.529015 kcal Electronic energy + Delta-G solvation = -19644.562315 eV Core-core repulsion = 16583.692334 eV Total energy + Delta-G solvation = -3060.869981 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.77990 -38.20403 -37.10716 -36.79152 -34.92900 -34.25328 -31.11346 -29.33760 -28.99591 -25.57506 -25.48473 -22.81853 -21.63785 -20.93790 -20.22716 -19.12111 -18.60155 -17.50332 -17.25784 -16.73443 -16.36700 -15.73421 -15.67914 -15.31802 -14.81436 -14.52906 -14.09901 -13.93866 -13.70124 -13.59502 -13.27073 -13.22928 -13.18248 -13.00177 -12.84381 -12.62436 -12.53096 -11.99682 -11.94642 -11.92700 -11.85549 -11.66691 -11.55483 -11.39122 -11.33176 -10.74357 -10.57392 -10.36436 -8.72572 -6.43574 -0.79594 1.51818 1.60469 1.74408 1.78830 2.53870 2.69109 3.12217 3.17167 3.56024 3.62713 3.65511 3.80716 3.93292 4.21137 4.24560 4.39399 4.47225 4.49780 4.58261 4.63442 4.74210 4.76609 4.80011 4.86686 4.97309 5.05323 5.15049 5.21336 5.24524 5.35552 5.36070 5.38161 5.44697 5.59744 5.94020 6.11122 6.14789 6.54279 7.37424 8.69072 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.030928 B = 0.003631 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.111268 B = 7709.124514 C = 8174.898057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 H 0.082 0.918 4 C -0.117 4.117 5 C -0.145 4.145 6 C 0.135 3.865 7 H 0.090 0.910 8 N -1.100 6.100 9 S 2.630 3.370 10 O -0.987 6.987 11 O -0.995 6.995 12 C -0.613 4.613 13 C -0.100 4.100 14 C 0.015 3.985 15 C -0.630 4.630 16 H 0.050 0.950 17 C -0.037 4.037 18 N -0.935 5.935 19 Si 1.118 2.882 20 H -0.271 1.271 21 H -0.270 1.270 22 H -0.280 1.280 23 C -0.127 4.127 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.425 0.575 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.000 1.000 37 H 0.001 0.999 38 H 0.258 0.742 39 H 0.083 0.917 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.931 8.092 -15.698 23.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.100 0.900 4 C -0.155 4.155 5 C -0.184 4.184 6 C 0.029 3.971 7 H 0.108 0.892 8 N -0.861 5.861 9 S 2.724 3.276 10 O -0.977 6.977 11 O -0.985 6.985 12 C -0.743 4.743 13 C -0.139 4.139 14 C -0.024 4.024 15 C -0.668 4.668 16 H 0.069 0.931 17 C -0.234 4.234 18 N -0.573 5.573 19 Si 0.939 3.061 20 H -0.197 1.197 21 H -0.195 1.195 22 H -0.205 1.205 23 C -0.166 4.166 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.262 0.738 32 H 0.165 0.835 33 H 0.163 0.837 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.018 0.982 37 H 0.019 0.981 38 H 0.067 0.933 39 H 0.102 0.898 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.378 7.276 -14.978 21.360 hybrid contribution -1.441 0.482 -0.627 1.644 sum -14.819 7.758 -15.605 22.876 Atomic orbital electron populations 1.21796 0.94249 1.01983 1.02048 1.21987 0.96068 0.99420 0.93937 0.89961 1.22575 0.94942 0.99965 0.97980 1.22895 0.98543 1.01799 0.95164 1.21671 0.99924 0.78410 0.97141 0.89156 1.55479 1.26394 1.18113 1.86118 1.04218 0.73574 0.73039 0.76734 1.93543 1.60572 1.84450 1.59088 1.93531 1.78076 1.38838 1.88041 1.30539 1.08700 1.11890 1.23164 1.21181 0.95157 0.98598 0.99001 1.19136 0.95390 0.95586 0.92243 1.22590 1.18170 1.21450 1.04541 0.93117 1.27418 1.04012 0.97907 0.94084 1.70894 1.25160 1.21593 1.39619 0.82923 0.72547 0.74579 0.76040 1.19696 1.19533 1.20539 1.22636 0.95998 0.99338 0.98652 0.92323 0.92232 0.92631 0.91464 0.90745 0.89987 0.92078 0.73842 0.83546 0.83688 0.91584 0.91719 0.98172 0.98056 0.93261 0.89815 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.12 71.98 0.66 -0.78 16 2 C -0.10 -1.10 3.46 -9.72 -0.03 -1.13 16 3 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 4 C -0.12 -1.55 6.33 31.89 0.20 -1.35 16 5 C -0.14 -2.52 6.54 31.67 0.21 -2.31 16 6 C 0.14 2.32 3.34 45.72 0.15 2.48 16 7 H 0.09 1.49 7.22 -2.39 -0.02 1.48 16 8 N -1.10 -21.35 5.29 -166.37 -0.88 -22.23 16 9 S 2.63 74.10 5.38 -56.49 -0.30 73.79 16 10 O -0.99 -33.72 17.82 -127.65 -2.27 -35.99 16 11 O -0.99 -34.33 18.08 -127.65 -2.31 -36.64 16 12 C -0.61 -18.04 5.97 71.98 0.43 -17.61 16 13 C -0.10 -4.11 5.16 30.59 0.16 -3.95 16 14 C 0.01 0.75 4.28 29.85 0.13 0.88 16 15 C -0.63 -36.43 9.11 25.60 0.23 -36.20 16 16 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 17 C -0.04 -2.12 5.46 84.65 0.46 -1.66 16 18 N -0.94 -57.65 13.65 21.45 0.29 -57.36 16 19 Si 1.12 50.63 29.90 68.60 2.05 52.68 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 C -0.13 -1.63 6.14 31.32 0.19 -1.44 16 24 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 25 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.05 0.56 8.12 -2.39 -0.02 0.54 16 27 H 0.07 0.89 8.04 -2.39 -0.02 0.88 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 1.30 8.04 -2.39 -0.02 1.28 16 31 H 0.42 6.61 8.63 -96.74 -0.83 5.77 16 32 H 0.15 3.77 8.14 -2.39 -0.02 3.75 16 33 H 0.14 3.66 7.48 -2.39 -0.02 3.64 16 34 H 0.07 2.68 8.14 -2.39 -0.02 2.67 16 35 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.00 0.00 8.01 -2.39 -0.02 -0.02 16 37 H 0.00 0.06 8.01 -2.38 -0.02 0.04 16 38 H 0.26 15.88 7.22 -92.71 -0.67 15.21 16 39 H 0.08 0.99 7.45 -2.39 -0.02 0.97 16 40 H 0.08 0.96 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -75.05 335.58 -0.36 -75.41 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.27 Total: 13.41 kcal Atomic # 6 Polarization: -65.87 SS G_CDS: 2.79 Total: -63.08 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -0.59 Total: -79.59 kcal Atomic # 8 Polarization: -68.05 SS G_CDS: -4.58 Total: -72.63 kcal Atomic # 14 Polarization: 50.63 SS G_CDS: 2.05 Total: 52.68 kcal Atomic # 16 Polarization: 74.10 SS G_CDS: -0.30 Total: 73.79 kcal Total: -75.05 -0.36 -75.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444221201.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.116 kcal (2) G-P(sol) polarization free energy of solvation -75.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds