Wall clock time and date at job start Mon Mar 30 2020 02:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08991 * 110.44021 * 2 1 4 4 C 1.54899 * 110.48270 * 122.54051 * 2 1 3 5 5 C 1.54891 * 102.74611 * 156.75167 * 4 2 1 6 6 C 1.54266 * 104.19455 * 322.05486 * 5 4 2 7 7 H 1.09001 * 110.03650 * 264.32561 * 6 5 4 8 8 N 1.46508 * 110.03176 * 142.89883 * 6 5 4 9 9 S 1.65592 * 119.99969 * 96.45239 * 8 6 5 10 10 O 1.42102 * 104.27773 * 181.07093 * 9 8 6 11 11 O 1.42098 * 104.28254 * 308.93035 * 9 8 6 12 12 C 1.81399 * 104.45196 * 65.00246 * 9 8 6 13 13 C 1.52995 * 109.47484 * 180.02562 * 12 9 8 14 14 C 1.53000 * 109.47301 * 180.02562 * 13 12 9 15 15 C 1.50705 * 109.47051 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00058 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99731 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99653 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00164 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47601 * 89.99750 * 19 17 15 21 21 H 1.48504 * 109.46929 * 210.00020 * 19 17 15 22 22 H 1.48502 * 109.47237 * 329.99780 * 19 17 15 23 23 C 1.53869 * 106.60029 * 23.61419 * 6 5 4 24 24 H 1.09002 * 109.47031 * 298.91475 * 1 2 3 25 25 H 1.09002 * 109.46994 * 58.90972 * 1 2 3 26 26 H 1.09003 * 109.47782 * 178.91683 * 1 2 3 27 27 H 1.08997 * 110.75810 * 38.43554 * 4 2 1 28 28 H 1.08994 * 110.75501 * 275.06128 * 4 2 1 29 29 H 1.09000 * 110.48374 * 203.37774 * 5 4 2 30 30 H 1.08995 * 110.49176 * 80.73636 * 5 4 2 31 31 H 0.97003 * 119.99708 * 276.44950 * 8 6 5 32 32 H 1.08998 * 109.47166 * 299.99821 * 12 9 8 33 33 H 1.09004 * 109.47367 * 59.99401 * 12 9 8 34 34 H 1.09001 * 109.46836 * 299.99504 * 13 12 9 35 35 H 1.08996 * 109.47681 * 59.99501 * 13 12 9 36 36 H 1.09001 * 109.46665 * 299.99479 * 14 13 12 37 37 H 1.08998 * 109.47681 * 59.99763 * 14 13 12 38 38 H 0.96996 * 120.00130 * 179.97438 * 18 17 15 39 39 H 1.08999 * 110.03445 * 119.28652 * 23 6 5 40 40 H 1.09009 * 110.03169 * 240.71589 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0720 -0.7805 1.2233 5 6 3.4919 -1.1941 0.7629 6 6 3.3200 -1.5377 -0.7312 7 1 3.1748 -2.6111 -0.8532 8 7 4.4980 -1.1013 -1.4852 9 16 5.7087 -2.1784 -1.8259 10 8 6.6737 -1.4094 -2.5307 11 8 6.0169 -2.7682 -0.5703 12 6 4.9359 -3.3946 -2.9278 13 6 5.9659 -4.4565 -3.3178 14 6 5.3142 -5.4819 -4.2477 15 6 6.3290 -6.5276 -4.6324 16 1 7.3379 -6.4666 -4.2520 17 6 5.9693 -7.5621 -5.4699 18 7 6.8550 -8.4744 -5.8060 19 14 4.2244 -7.6671 -6.1284 20 1 4.1343 -6.9263 -7.4123 21 1 3.8646 -9.0905 -6.3519 22 1 3.2871 -7.0682 -5.1445 23 6 2.0727 -0.7785 -1.2162 24 1 -0.3633 0.4969 0.8996 25 1 -0.3633 0.5307 -0.8801 26 1 -0.3635 -1.0275 -0.0194 27 1 1.4593 -1.6596 1.4230 28 1 2.1229 -0.1362 2.1009 29 1 3.8336 -2.0675 1.3184 30 1 4.1894 -0.3657 0.8861 31 1 4.5685 -0.1815 -1.7848 32 1 4.1004 -3.8706 -2.4146 33 1 4.5729 -2.8931 -3.8250 34 1 6.8017 -3.9808 -3.8310 35 1 6.3284 -4.9580 -2.4205 36 1 4.4782 -5.9577 -3.7349 37 1 4.9520 -4.9802 -5.1451 38 1 6.6019 -9.2023 -6.3949 39 1 2.3437 -0.0854 -2.0126 40 1 1.3220 -1.4835 -1.5736 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444221203.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:56 Heat of formation + Delta-G solvation = -106.174636 kcal Electronic energy + Delta-G solvation = -19629.420970 eV Core-core repulsion = 16569.953980 eV Total energy + Delta-G solvation = -3059.466989 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.07159 -36.89595 -35.78004 -34.81848 -34.27908 -32.22145 -30.51547 -28.39548 -28.22379 -24.95094 -23.62705 -20.95725 -20.55089 -20.18001 -19.34903 -17.61731 -16.92505 -16.62249 -15.90351 -15.61268 -15.01519 -14.90355 -14.21665 -14.20091 -13.84998 -13.34451 -12.95181 -12.74122 -12.49127 -12.33394 -12.25074 -12.13916 -11.90943 -11.83428 -11.59105 -11.32981 -11.21846 -11.03982 -10.99052 -10.96176 -10.83000 -10.79349 -10.10003 -9.91408 -9.81201 -9.37693 -9.25209 -8.59456 -6.09062 -4.08358 0.41345 2.80997 3.25875 3.33391 3.35310 3.88319 4.22585 4.24942 4.33986 4.39616 4.49560 4.86484 4.95790 5.02543 5.07801 5.16995 5.21798 5.22213 5.25042 5.27713 5.34478 5.54003 5.61212 5.66315 5.74849 5.81854 5.83209 6.00912 6.10880 6.13478 6.17625 6.26224 6.66320 6.88490 7.11820 7.25805 7.70389 8.47081 8.95463 9.52009 11.04299 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.022193 B = 0.004140 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.363905 B = 6761.650923 C = 7584.696016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.074 0.926 4 C -0.121 4.121 5 C -0.139 4.139 6 C 0.147 3.853 7 H 0.088 0.912 8 N -1.118 6.118 9 S 2.600 3.400 10 O -0.963 6.963 11 O -0.957 6.957 12 C -0.617 4.617 13 C -0.098 4.098 14 C -0.004 4.004 15 C -0.527 4.527 16 H 0.075 0.925 17 C 0.067 3.933 18 N -0.900 5.900 19 Si 0.881 3.119 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.266 1.266 23 C -0.129 4.129 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.414 0.586 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.020 0.980 37 H 0.015 0.985 38 H 0.264 0.736 39 H 0.075 0.925 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.586 18.214 11.702 25.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.093 0.907 4 C -0.159 4.159 5 C -0.178 4.178 6 C 0.039 3.961 7 H 0.106 0.894 8 N -0.876 5.876 9 S 2.696 3.304 10 O -0.953 6.953 11 O -0.947 6.947 12 C -0.748 4.748 13 C -0.137 4.137 14 C -0.043 4.043 15 C -0.565 4.565 16 H 0.093 0.907 17 C -0.134 4.134 18 N -0.539 5.539 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.191 1.191 23 C -0.168 4.168 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.248 0.752 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.038 0.962 37 H 0.034 0.966 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.677 17.918 11.998 25.015 hybrid contribution -1.452 -0.028 -0.999 1.763 sum -14.130 17.890 11.000 25.312 Atomic orbital electron populations 1.21815 0.94902 1.01965 1.01589 1.21970 0.95512 0.99355 0.94822 0.90716 1.22586 0.95986 0.99953 0.97401 1.22873 0.97203 1.02611 0.95125 1.21436 0.84620 0.98772 0.91233 0.89423 1.55918 1.36753 1.24681 1.70208 1.05289 0.74011 0.75320 0.75811 1.93584 1.57585 1.68437 1.75744 1.93583 1.82266 1.78787 1.40083 1.30615 1.12647 1.15600 1.15943 1.21307 0.95602 0.94996 1.01785 1.19531 0.96808 0.93903 0.94068 1.21142 0.98275 1.07786 1.29321 0.90719 1.25029 0.97238 0.95359 0.95803 1.69910 1.34286 1.13762 1.35933 0.86770 0.85495 0.77286 0.79668 1.20217 1.21250 1.19083 1.22596 0.96541 0.99494 0.98152 0.92685 0.92734 0.92447 0.91101 0.91412 0.90358 0.90682 0.75178 0.85645 0.85298 0.91001 0.90947 0.96200 0.96624 0.92615 0.90673 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.13 37.16 0.34 -0.51 16 2 C -0.10 -0.64 3.45 -88.96 -0.31 -0.95 16 3 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.12 -0.86 6.33 -24.73 -0.16 -1.02 16 5 C -0.14 -1.26 6.53 -25.07 -0.16 -1.42 16 6 C 0.15 1.32 3.33 -66.81 -0.22 1.10 16 7 H 0.09 0.76 7.21 -51.93 -0.37 0.38 16 8 N -1.12 -11.17 5.31 -3.94 -0.02 -11.19 16 9 S 2.60 36.45 5.39 -107.50 -0.58 35.87 16 10 O -0.96 -16.53 18.08 -57.54 -1.04 -17.57 16 11 O -0.96 -16.20 17.82 -57.54 -1.03 -17.23 16 12 C -0.62 -8.79 5.97 37.16 0.22 -8.57 16 13 C -0.10 -1.90 5.16 -26.73 -0.14 -2.04 16 14 C 0.00 -0.10 4.04 -27.88 -0.11 -0.22 16 15 C -0.53 -15.04 9.66 -34.44 -0.33 -15.37 16 16 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 18 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 19 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 23 C -0.13 -0.92 6.14 -25.62 -0.16 -1.08 16 24 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.34 8.11 -51.93 -0.42 -0.09 16 27 H 0.07 0.48 8.06 -51.93 -0.42 0.06 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 31 H 0.41 3.37 8.60 -34.47 -0.30 3.07 16 32 H 0.13 1.53 7.47 -51.92 -0.39 1.14 16 33 H 0.13 1.59 8.14 -51.92 -0.42 1.17 16 34 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 37 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.07 0.49 7.73 -51.93 -0.40 0.09 16 40 H 0.08 0.51 7.82 -51.92 -0.41 0.10 16 LS Contribution 333.24 15.07 5.02 5.02 Total: -1.00 -34.98 333.24 -9.53 -44.51 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.86 Total: -0.94 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: -1.13 Total: -28.22 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.75 Total: -38.17 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -2.07 Total: -34.80 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 16 Polarization: 36.45 SS G_CDS: -0.58 Total: 35.87 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.98 -9.53 -44.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444221203.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.670 kcal (2) G-P(sol) polarization free energy of solvation -34.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds