Wall clock time and date at job start Mon Mar 30 2020 02:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08991 * 110.44021 * 2 1 4 4 C 1.54899 * 110.48270 * 122.54051 * 2 1 3 5 5 C 1.54891 * 102.74611 * 156.75167 * 4 2 1 6 6 C 1.54266 * 104.19455 * 322.05486 * 5 4 2 7 7 H 1.09001 * 110.03650 * 264.32561 * 6 5 4 8 8 N 1.46508 * 110.03176 * 142.89883 * 6 5 4 9 9 S 1.65592 * 119.99969 * 96.45239 * 8 6 5 10 10 O 1.42102 * 104.27773 * 181.07093 * 9 8 6 11 11 O 1.42098 * 104.28254 * 308.93035 * 9 8 6 12 12 C 1.81399 * 104.45196 * 65.00246 * 9 8 6 13 13 C 1.52995 * 109.47484 * 180.02562 * 12 9 8 14 14 C 1.53000 * 109.47301 * 180.02562 * 13 12 9 15 15 C 1.50705 * 109.47051 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00058 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99731 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99653 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00164 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47601 * 89.99750 * 19 17 15 21 21 H 1.48504 * 109.46929 * 210.00020 * 19 17 15 22 22 H 1.48502 * 109.47237 * 329.99780 * 19 17 15 23 23 C 1.53869 * 106.60029 * 23.61419 * 6 5 4 24 24 H 1.09002 * 109.47031 * 298.91475 * 1 2 3 25 25 H 1.09002 * 109.46994 * 58.90972 * 1 2 3 26 26 H 1.09003 * 109.47782 * 178.91683 * 1 2 3 27 27 H 1.08997 * 110.75810 * 38.43554 * 4 2 1 28 28 H 1.08994 * 110.75501 * 275.06128 * 4 2 1 29 29 H 1.09000 * 110.48374 * 203.37774 * 5 4 2 30 30 H 1.08995 * 110.49176 * 80.73636 * 5 4 2 31 31 H 0.97003 * 119.99708 * 276.44950 * 8 6 5 32 32 H 1.08998 * 109.47166 * 299.99821 * 12 9 8 33 33 H 1.09004 * 109.47367 * 59.99401 * 12 9 8 34 34 H 1.09001 * 109.46836 * 299.99504 * 13 12 9 35 35 H 1.08996 * 109.47681 * 59.99501 * 13 12 9 36 36 H 1.09001 * 109.46665 * 299.99479 * 14 13 12 37 37 H 1.08998 * 109.47681 * 59.99763 * 14 13 12 38 38 H 0.96996 * 120.00130 * 179.97438 * 18 17 15 39 39 H 1.08999 * 110.03445 * 119.28652 * 23 6 5 40 40 H 1.09009 * 110.03169 * 240.71589 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0720 -0.7805 1.2233 5 6 3.4919 -1.1941 0.7629 6 6 3.3200 -1.5377 -0.7312 7 1 3.1748 -2.6111 -0.8532 8 7 4.4980 -1.1013 -1.4852 9 16 5.7087 -2.1784 -1.8259 10 8 6.6737 -1.4094 -2.5307 11 8 6.0169 -2.7682 -0.5703 12 6 4.9359 -3.3946 -2.9278 13 6 5.9659 -4.4565 -3.3178 14 6 5.3142 -5.4819 -4.2477 15 6 6.3290 -6.5276 -4.6324 16 1 7.3379 -6.4666 -4.2520 17 6 5.9693 -7.5621 -5.4699 18 7 6.8550 -8.4744 -5.8060 19 14 4.2244 -7.6671 -6.1284 20 1 4.1343 -6.9263 -7.4123 21 1 3.8646 -9.0905 -6.3519 22 1 3.2871 -7.0682 -5.1445 23 6 2.0727 -0.7785 -1.2162 24 1 -0.3633 0.4969 0.8996 25 1 -0.3633 0.5307 -0.8801 26 1 -0.3635 -1.0275 -0.0194 27 1 1.4593 -1.6596 1.4230 28 1 2.1229 -0.1362 2.1009 29 1 3.8336 -2.0675 1.3184 30 1 4.1894 -0.3657 0.8861 31 1 4.5685 -0.1815 -1.7848 32 1 4.1004 -3.8706 -2.4146 33 1 4.5729 -2.8931 -3.8250 34 1 6.8017 -3.9808 -3.8310 35 1 6.3284 -4.9580 -2.4205 36 1 4.4782 -5.9577 -3.7349 37 1 4.9520 -4.9802 -5.1451 38 1 6.6019 -9.2023 -6.3949 39 1 2.3437 -0.0854 -2.0126 40 1 1.3220 -1.4835 -1.5736 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444221203.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:56 Heat of formation + Delta-G solvation = -131.552976 kcal Electronic energy + Delta-G solvation = -19630.521457 eV Core-core repulsion = 16569.953980 eV Total energy + Delta-G solvation = -3060.567477 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.69717 -38.13630 -37.03039 -36.51186 -35.00601 -34.25575 -31.11654 -30.16455 -28.83418 -25.50888 -25.40848 -22.28288 -21.62709 -20.71436 -20.43471 -18.98268 -18.68992 -17.53148 -17.19001 -16.60715 -16.19677 -15.94469 -15.67781 -15.29921 -14.86955 -14.38941 -14.09471 -13.96794 -13.66137 -13.47379 -13.26645 -13.20147 -13.13298 -13.09712 -12.79812 -12.69556 -12.55305 -12.08713 -11.84854 -11.80787 -11.65847 -11.58466 -11.43537 -11.39453 -11.33712 -11.23332 -10.78048 -10.32171 -8.30417 -6.36609 -0.72572 1.36658 1.39376 1.51004 1.81179 2.36177 2.76779 3.04724 3.25213 3.59649 3.67197 3.71600 3.91333 3.94183 4.26570 4.33452 4.45027 4.53535 4.57766 4.61010 4.67141 4.75320 4.78905 4.85001 4.95234 5.01887 5.08807 5.18658 5.23899 5.33072 5.38765 5.40355 5.45259 5.52213 5.61852 5.62035 6.16042 6.24683 6.71770 7.28116 8.86717 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.022193 B = 0.004140 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.363905 B = 6761.650923 C = 7584.696016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.077 0.923 4 C -0.117 4.117 5 C -0.145 4.145 6 C 0.136 3.864 7 H 0.094 0.906 8 N -1.101 6.101 9 S 2.620 3.380 10 O -0.998 6.998 11 O -0.990 6.990 12 C -0.610 4.610 13 C -0.104 4.104 14 C -0.005 4.005 15 C -0.545 4.545 16 H 0.029 0.971 17 C 0.000 4.000 18 N -0.953 5.953 19 Si 0.956 3.044 20 H -0.265 1.265 21 H -0.285 1.285 22 H -0.237 1.237 23 C -0.125 4.125 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.425 0.575 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.033 0.967 37 H 0.031 0.969 38 H 0.267 0.733 39 H 0.084 0.916 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.070 19.700 11.555 28.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.095 0.905 4 C -0.155 4.155 5 C -0.185 4.185 6 C 0.029 3.971 7 H 0.112 0.888 8 N -0.862 5.862 9 S 2.716 3.284 10 O -0.988 6.988 11 O -0.980 6.980 12 C -0.741 4.741 13 C -0.144 4.144 14 C -0.043 4.043 15 C -0.583 4.583 16 H 0.047 0.953 17 C -0.197 4.197 18 N -0.593 5.593 19 Si 0.779 3.221 20 H -0.189 1.189 21 H -0.211 1.211 22 H -0.160 1.160 23 C -0.165 4.165 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.262 0.738 32 H 0.171 0.829 33 H 0.174 0.826 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.152 19.436 11.869 27.920 hybrid contribution -0.278 -0.481 -0.887 1.047 sum -16.430 18.955 10.982 27.383 Atomic orbital electron populations 1.21799 0.94166 1.02151 1.01992 1.21967 0.96062 0.99268 0.94166 0.90497 1.22575 0.94655 1.00343 0.97957 1.22899 0.98405 1.01835 0.95341 1.21717 0.84735 0.99650 0.90974 0.88766 1.55511 1.36282 1.24452 1.69979 1.04426 0.74000 0.75108 0.74852 1.93535 1.59667 1.69297 1.76302 1.93544 1.83195 1.79641 1.41622 1.30513 1.11836 1.14300 1.17494 1.21177 0.96772 0.95736 1.00666 1.19507 0.95815 0.93479 0.95542 1.21573 0.97844 1.09696 1.29236 0.95291 1.26136 1.02749 0.94694 0.96084 1.70086 1.37221 1.14850 1.37185 0.85574 0.79198 0.77626 0.79744 1.18945 1.21103 1.16047 1.22604 0.95575 0.99735 0.98537 0.92364 0.92316 0.92362 0.90669 0.90905 0.91825 0.91278 0.73808 0.82868 0.82567 0.92031 0.91904 0.94852 0.95067 0.92411 0.89757 0.89515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.13 71.98 0.66 -0.60 16 2 C -0.10 -0.99 3.45 -9.72 -0.03 -1.03 16 3 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 4 C -0.12 -1.42 6.33 31.89 0.20 -1.22 16 5 C -0.15 -2.43 6.53 31.67 0.21 -2.22 16 6 C 0.14 2.11 3.33 45.71 0.15 2.26 16 7 H 0.09 1.35 7.21 -2.39 -0.02 1.33 16 8 N -1.10 -19.55 5.31 -166.37 -0.88 -20.43 16 9 S 2.62 70.24 5.39 -56.49 -0.30 69.93 16 10 O -1.00 -33.67 18.08 -127.65 -2.31 -35.98 16 11 O -0.99 -33.17 17.82 -127.65 -2.27 -35.45 16 12 C -0.61 -15.74 5.97 71.98 0.43 -15.31 16 13 C -0.10 -3.99 5.16 30.59 0.16 -3.83 16 14 C 0.00 -0.22 4.04 29.85 0.12 -0.10 16 15 C -0.55 -31.74 9.66 25.60 0.25 -31.50 16 16 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 17 C 0.00 0.00 5.47 84.66 0.46 0.46 16 18 N -0.95 -60.35 13.96 21.45 0.30 -60.05 16 19 Si 0.96 43.05 27.47 68.60 1.88 44.94 16 20 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 21 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.24 -9.53 6.54 99.48 0.65 -8.88 16 23 C -0.13 -1.37 6.14 31.32 0.19 -1.18 16 24 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.06 0.51 8.11 -2.39 -0.02 0.49 16 27 H 0.07 0.85 8.06 -2.39 -0.02 0.83 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.22 8.05 -2.39 -0.02 1.20 16 31 H 0.43 5.90 8.60 -96.74 -0.83 5.07 16 32 H 0.15 3.12 7.47 -2.39 -0.02 3.10 16 33 H 0.16 3.21 8.14 -2.39 -0.02 3.20 16 34 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.03 1.42 7.20 -2.39 -0.02 1.40 16 37 H 0.03 1.31 7.57 -2.39 -0.02 1.29 16 38 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 39 H 0.08 0.79 7.73 -2.39 -0.02 0.77 16 40 H 0.09 0.81 7.82 -2.38 -0.02 0.79 16 Total: -1.00 -77.40 333.24 -0.67 -78.07 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.12 Total: 13.23 kcal Atomic # 6 Polarization: -57.06 SS G_CDS: 2.80 Total: -54.26 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -0.58 Total: -80.48 kcal Atomic # 8 Polarization: -66.84 SS G_CDS: -4.58 Total: -71.43 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.88 Total: 44.94 kcal Atomic # 16 Polarization: 70.24 SS G_CDS: -0.30 Total: 69.93 kcal Total: -77.40 -0.67 -78.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444221203.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.482 kcal (2) G-P(sol) polarization free energy of solvation -77.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds