Wall clock time and date at job start Mon Mar 30 2020 02:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 110.01942 * 2 1 4 4 C 1.53871 * 110.07319 * 121.41936 * 2 1 3 5 5 C 1.54269 * 106.59817 * 119.30889 * 4 2 1 6 6 C 1.54888 * 104.19646 * 23.60539 * 5 4 2 7 7 H 1.09003 * 110.91037 * 80.45132 * 6 5 4 8 8 N 1.46497 * 110.75744 * 203.74392 * 6 5 4 9 9 S 1.65599 * 120.00110 * 258.33015 * 8 6 5 10 10 O 1.42105 * 104.27797 * 181.07392 * 9 8 6 11 11 O 1.42101 * 104.27901 * 308.93100 * 9 8 6 12 12 C 1.81397 * 104.44825 * 65.00280 * 9 8 6 13 13 C 1.53009 * 109.47235 * 179.97438 * 12 9 8 14 14 C 1.52995 * 109.46990 * 179.97438 * 13 12 9 15 15 C 1.50700 * 109.47073 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99821 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00285 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00002 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00089 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47082 * 60.00628 * 19 17 15 21 21 H 1.48506 * 109.47003 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47658 * 300.00580 * 19 17 15 23 23 C 1.54269 * 110.03413 * 238.61409 * 2 1 3 24 24 H 1.08995 * 109.47548 * 181.38983 * 1 2 3 25 25 H 1.09010 * 109.47316 * 301.39123 * 1 2 3 26 26 H 1.09005 * 109.47484 * 61.38449 * 1 2 3 27 27 H 1.09000 * 110.03834 * 238.58753 * 4 2 1 28 28 H 1.08994 * 110.03304 * 0.02562 * 4 2 1 29 29 H 1.09010 * 110.48324 * 264.93521 * 5 4 2 30 30 H 1.08995 * 110.48909 * 142.29215 * 5 4 2 31 31 H 0.96999 * 119.99844 * 78.33740 * 8 6 5 32 32 H 1.09004 * 109.47032 * 299.99803 * 12 9 8 33 33 H 1.09000 * 109.47124 * 60.00075 * 12 9 8 34 34 H 1.08995 * 109.47216 * 300.00010 * 13 12 9 35 35 H 1.09000 * 109.46805 * 60.00123 * 13 12 9 36 36 H 1.08995 * 109.47375 * 300.00190 * 14 13 12 37 37 H 1.09000 * 109.47020 * 60.00531 * 14 13 12 38 38 H 0.96996 * 119.99810 * 179.97438 * 18 17 15 39 39 H 1.09002 * 110.48621 * 98.37474 * 23 2 1 40 40 H 1.09004 * 110.59156 * 335.78899 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0581 -0.7534 1.2333 5 6 2.8891 -1.9398 0.7025 6 6 3.3143 -1.4994 -0.7202 7 1 4.1720 -0.8280 -0.6795 8 7 3.6089 -2.6645 -1.5580 9 16 5.1799 -3.1057 -1.8399 10 8 5.0784 -4.2366 -2.6944 11 8 5.8066 -1.9087 -2.2801 12 6 5.8122 -3.5934 -0.2111 13 6 7.2735 -4.0282 -0.3405 14 6 7.8069 -4.4389 1.0334 15 6 9.2460 -4.8677 0.9059 16 1 9.7316 -4.8487 -0.0586 17 6 9.9429 -5.2832 2.0206 18 7 9.3517 -5.3058 3.1951 19 14 11.7265 -5.8154 1.8623 20 1 12.5347 -4.6871 1.3340 21 1 12.2443 -6.2139 3.1959 22 1 11.8183 -6.9686 0.9313 23 6 2.0584 -0.7548 -1.2373 24 1 -0.3634 -1.0273 0.0249 25 1 -0.3634 0.5353 0.8773 26 1 -0.3634 0.4922 -0.9022 27 1 2.6875 -0.0950 1.8320 28 1 1.2244 -1.1198 1.8323 29 1 2.2792 -2.8422 0.6562 30 1 3.7656 -2.1025 1.3296 31 1 2.8837 -3.1773 -1.9478 32 1 5.7435 -2.7478 0.4734 33 1 5.2196 -4.4227 0.1752 34 1 7.3417 -4.8738 -1.0248 35 1 7.8663 -3.1991 -0.7270 36 1 7.7387 -3.5930 1.7174 37 1 7.2142 -5.2678 1.4203 38 1 9.8419 -5.5985 3.9793 39 1 2.3288 -0.0526 -2.0258 40 1 1.3154 -1.4657 -1.5990 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444221204.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:58 Heat of formation + Delta-G solvation = -112.196301 kcal Electronic energy + Delta-G solvation = -19629.437440 eV Core-core repulsion = 16569.709332 eV Total energy + Delta-G solvation = -3059.728108 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.00507 -36.85026 -35.73604 -34.66678 -34.27204 -32.18820 -30.40437 -28.25392 -27.77686 -24.89778 -23.70954 -21.12806 -20.72796 -19.86594 -19.18626 -17.55639 -16.67743 -16.37347 -16.03641 -15.66552 -15.22260 -14.49006 -14.21707 -14.03234 -13.69865 -13.38701 -12.89863 -12.58627 -12.35545 -12.29126 -12.23938 -11.92462 -11.82368 -11.76437 -11.43103 -11.25209 -11.20567 -10.95939 -10.89191 -10.86683 -10.82429 -10.59621 -10.42061 -9.94140 -9.64833 -9.31468 -9.07260 -8.40295 -6.05535 -4.08605 0.49159 2.85926 3.32309 3.36090 3.39396 3.96413 4.25282 4.31615 4.42651 4.44449 4.56135 4.94632 5.02183 5.08157 5.14956 5.19114 5.22567 5.30706 5.34676 5.35980 5.48744 5.58618 5.61203 5.72376 5.82688 5.86660 5.91805 6.03071 6.16616 6.20604 6.27808 6.45907 6.87438 6.94414 7.56930 7.67225 7.92457 8.33099 8.97433 9.56053 11.05653 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.026153 B = 0.003843 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.345879 B = 7283.345365 C = 8054.183883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.075 0.925 4 C -0.120 4.120 5 C -0.148 4.148 6 C 0.140 3.860 7 H 0.102 0.898 8 N -1.116 6.116 9 S 2.599 3.401 10 O -0.965 6.965 11 O -0.963 6.963 12 C -0.608 4.608 13 C -0.106 4.106 14 C 0.031 3.969 15 C -0.527 4.527 16 H 0.057 0.943 17 C 0.058 3.942 18 N -0.896 5.896 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.122 4.122 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.414 0.586 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.262 0.738 39 H 0.072 0.928 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.438 9.500 -5.096 21.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.093 0.907 4 C -0.158 4.158 5 C -0.188 4.188 6 C 0.032 3.968 7 H 0.120 0.880 8 N -0.872 5.872 9 S 2.695 3.305 10 O -0.956 6.956 11 O -0.953 6.953 12 C -0.740 4.740 13 C -0.145 4.145 14 C -0.007 4.007 15 C -0.565 4.565 16 H 0.076 0.924 17 C -0.143 4.143 18 N -0.535 5.535 19 Si 0.722 3.278 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.161 4.161 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.248 0.752 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.841 9.591 -5.712 21.046 hybrid contribution 0.487 -0.647 0.660 1.045 sum -17.354 8.943 -5.052 20.166 Atomic orbital electron populations 1.21878 0.94898 1.01797 1.01554 1.21719 0.95816 0.99610 0.94564 0.90697 1.22184 0.99571 0.96838 0.97220 1.22967 1.00740 0.98926 0.96124 1.21853 0.99220 0.86359 0.89371 0.88028 1.55701 1.26257 1.39928 1.65323 1.05320 0.73158 0.74297 0.77728 1.93575 1.85054 1.53085 1.63836 1.93568 1.75273 1.46803 1.79686 1.30588 1.09886 1.11826 1.21690 1.21501 0.88194 1.00873 1.03969 1.19049 0.95690 0.96802 0.89149 1.21225 0.96722 1.44256 0.94346 0.92426 1.25015 0.98458 0.95570 0.95299 1.69947 1.36973 1.47630 0.98904 0.86615 0.84799 0.79192 0.77173 1.20110 1.21248 1.20124 1.22688 0.96482 0.99238 0.97671 0.92580 0.92691 0.92785 0.91386 0.91358 0.90597 0.90631 0.75249 0.85538 0.85277 0.91598 0.91598 0.96138 0.96142 0.92849 0.90932 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 8.84 37.15 0.33 -0.57 16 2 C -0.10 -0.71 3.50 -89.51 -0.31 -1.02 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.12 -0.92 6.46 -25.61 -0.17 -1.08 16 5 C -0.15 -1.30 6.51 -25.07 -0.16 -1.46 16 6 C 0.14 1.36 3.46 -65.94 -0.23 1.13 16 7 H 0.10 1.05 7.57 -51.93 -0.39 0.66 16 8 N -1.12 -11.91 5.48 -3.20 -0.02 -11.92 16 9 S 2.60 38.22 5.43 -107.50 -0.58 37.63 16 10 O -0.97 -17.07 18.08 -57.54 -1.04 -18.11 16 11 O -0.96 -17.03 17.45 -57.54 -1.00 -18.04 16 12 C -0.61 -9.31 6.07 37.16 0.23 -9.08 16 13 C -0.11 -2.15 5.16 -26.73 -0.14 -2.29 16 14 C 0.03 0.79 4.97 -27.89 -0.14 0.66 16 15 C -0.53 -14.89 9.11 -34.44 -0.31 -15.20 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 19 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 23 C -0.12 -0.98 6.01 -25.07 -0.15 -1.13 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.32 8.14 -51.92 -0.42 -0.10 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.48 7.67 -51.93 -0.40 0.08 16 29 H 0.08 0.63 8.14 -51.92 -0.42 0.20 16 30 H 0.07 0.70 7.58 -51.93 -0.39 0.30 16 31 H 0.41 3.61 8.78 -34.47 -0.30 3.31 16 32 H 0.13 1.72 7.58 -51.92 -0.39 1.32 16 33 H 0.13 1.77 8.14 -51.92 -0.42 1.35 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.54 7.78 -51.93 -0.40 0.14 16 LS Contribution 336.86 15.07 5.08 5.08 Total: -1.00 -34.32 336.86 -9.91 -44.22 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.90 Total: -1.12 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: -1.15 Total: -28.50 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.72 Total: -37.76 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -2.04 Total: -36.15 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 38.22 SS G_CDS: -0.58 Total: 37.63 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.32 -9.91 -44.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444221204.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.973 kcal (2) G-P(sol) polarization free energy of solvation -34.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds