Wall clock time and date at job start Mon Mar 30 2020 02:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 110.01942 * 2 1 4 4 C 1.53871 * 110.07319 * 121.41936 * 2 1 3 5 5 C 1.54269 * 106.59817 * 119.30889 * 4 2 1 6 6 C 1.54888 * 104.19646 * 23.60539 * 5 4 2 7 7 H 1.09003 * 110.91037 * 80.45132 * 6 5 4 8 8 N 1.46497 * 110.75744 * 203.74392 * 6 5 4 9 9 S 1.65599 * 120.00110 * 258.33015 * 8 6 5 10 10 O 1.42105 * 104.27797 * 181.07392 * 9 8 6 11 11 O 1.42101 * 104.27901 * 308.93100 * 9 8 6 12 12 C 1.81397 * 104.44825 * 65.00280 * 9 8 6 13 13 C 1.53009 * 109.47235 * 179.97438 * 12 9 8 14 14 C 1.52995 * 109.46990 * 179.97438 * 13 12 9 15 15 C 1.50700 * 109.47073 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99821 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00285 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00002 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00089 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47082 * 60.00628 * 19 17 15 21 21 H 1.48506 * 109.47003 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47658 * 300.00580 * 19 17 15 23 23 C 1.54269 * 110.03413 * 238.61409 * 2 1 3 24 24 H 1.08995 * 109.47548 * 181.38983 * 1 2 3 25 25 H 1.09010 * 109.47316 * 301.39123 * 1 2 3 26 26 H 1.09005 * 109.47484 * 61.38449 * 1 2 3 27 27 H 1.09000 * 110.03834 * 238.58753 * 4 2 1 28 28 H 1.08994 * 110.03304 * 0.02562 * 4 2 1 29 29 H 1.09010 * 110.48324 * 264.93521 * 5 4 2 30 30 H 1.08995 * 110.48909 * 142.29215 * 5 4 2 31 31 H 0.96999 * 119.99844 * 78.33740 * 8 6 5 32 32 H 1.09004 * 109.47032 * 299.99803 * 12 9 8 33 33 H 1.09000 * 109.47124 * 60.00075 * 12 9 8 34 34 H 1.08995 * 109.47216 * 300.00010 * 13 12 9 35 35 H 1.09000 * 109.46805 * 60.00123 * 13 12 9 36 36 H 1.08995 * 109.47375 * 300.00190 * 14 13 12 37 37 H 1.09000 * 109.47020 * 60.00531 * 14 13 12 38 38 H 0.96996 * 119.99810 * 179.97438 * 18 17 15 39 39 H 1.09002 * 110.48621 * 98.37474 * 23 2 1 40 40 H 1.09004 * 110.59156 * 335.78899 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0581 -0.7534 1.2333 5 6 2.8891 -1.9398 0.7025 6 6 3.3143 -1.4994 -0.7202 7 1 4.1720 -0.8280 -0.6795 8 7 3.6089 -2.6645 -1.5580 9 16 5.1799 -3.1057 -1.8399 10 8 5.0784 -4.2366 -2.6944 11 8 5.8066 -1.9087 -2.2801 12 6 5.8122 -3.5934 -0.2111 13 6 7.2735 -4.0282 -0.3405 14 6 7.8069 -4.4389 1.0334 15 6 9.2460 -4.8677 0.9059 16 1 9.7316 -4.8487 -0.0586 17 6 9.9429 -5.2832 2.0206 18 7 9.3517 -5.3058 3.1951 19 14 11.7265 -5.8154 1.8623 20 1 12.5347 -4.6871 1.3340 21 1 12.2443 -6.2139 3.1959 22 1 11.8183 -6.9686 0.9313 23 6 2.0584 -0.7548 -1.2373 24 1 -0.3634 -1.0273 0.0249 25 1 -0.3634 0.5353 0.8773 26 1 -0.3634 0.4922 -0.9022 27 1 2.6875 -0.0950 1.8320 28 1 1.2244 -1.1198 1.8323 29 1 2.2792 -2.8422 0.6562 30 1 3.7656 -2.1025 1.3296 31 1 2.8837 -3.1773 -1.9478 32 1 5.7435 -2.7478 0.4734 33 1 5.2196 -4.4227 0.1752 34 1 7.3417 -4.8738 -1.0248 35 1 7.8663 -3.1991 -0.7270 36 1 7.7387 -3.5930 1.7174 37 1 7.2142 -5.2678 1.4203 38 1 9.8419 -5.5985 3.9793 39 1 2.3288 -0.0526 -2.0258 40 1 1.3154 -1.4657 -1.5990 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444221204.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:58 Heat of formation + Delta-G solvation = -135.815916 kcal Electronic energy + Delta-G solvation = -19630.461663 eV Core-core repulsion = 16569.709332 eV Total energy + Delta-G solvation = -3060.752332 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.69258 -38.16681 -37.06532 -36.47060 -35.08314 -34.16921 -31.05494 -29.66250 -28.89899 -25.67073 -25.45278 -22.45492 -21.86953 -20.64546 -20.21930 -18.77379 -18.51262 -17.49554 -17.13086 -16.70001 -16.49848 -16.35228 -15.64837 -14.70001 -14.50396 -14.41682 -14.16164 -13.96627 -13.57171 -13.51013 -13.26033 -13.15745 -13.10387 -12.97283 -12.93289 -12.73412 -12.65543 -12.24354 -12.15292 -11.86334 -11.75127 -11.55704 -11.44707 -11.37886 -11.19510 -11.10014 -10.57188 -10.29567 -8.22799 -6.33885 -0.73356 1.40017 1.42533 1.50472 1.78018 2.39697 2.75071 3.10649 3.21797 3.60266 3.66947 3.76932 3.91218 3.94012 4.24631 4.38204 4.42589 4.48991 4.57852 4.62820 4.68680 4.76522 4.81269 4.93479 4.98676 5.03270 5.06529 5.18562 5.23241 5.37372 5.40300 5.45030 5.50343 5.61309 5.62963 5.79211 6.14561 6.19620 6.81515 7.35394 8.88449 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.026153 B = 0.003843 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.345879 B = 7283.345365 C = 8054.183883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 H 0.076 0.924 4 C -0.120 4.120 5 C -0.150 4.150 6 C 0.129 3.871 7 H 0.094 0.906 8 N -1.099 6.099 9 S 2.628 3.372 10 O -0.994 6.994 11 O -0.992 6.992 12 C -0.608 4.608 13 C -0.106 4.106 14 C 0.032 3.968 15 C -0.555 4.555 16 H 0.060 0.940 17 C 0.004 3.996 18 N -0.929 5.929 19 Si 0.962 3.038 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.268 1.268 23 C -0.119 4.119 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.426 0.574 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.003 0.997 37 H 0.003 0.997 38 H 0.265 0.735 39 H 0.071 0.929 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.237 9.817 -5.413 22.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 H 0.095 0.905 4 C -0.158 4.158 5 C -0.189 4.189 6 C 0.022 3.978 7 H 0.112 0.888 8 N -0.859 5.859 9 S 2.724 3.276 10 O -0.984 6.984 11 O -0.982 6.982 12 C -0.739 4.739 13 C -0.146 4.146 14 C -0.006 4.006 15 C -0.593 4.593 16 H 0.078 0.922 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.787 3.213 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.193 1.193 23 C -0.158 4.158 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.263 0.737 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.022 0.978 37 H 0.021 0.979 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.644 9.902 -6.038 21.957 hybrid contribution 0.663 -0.712 0.783 1.248 sum -17.981 9.191 -5.256 20.866 Atomic orbital electron populations 1.21860 0.93974 1.02064 1.02013 1.21716 0.96549 0.99475 0.93794 0.90522 1.22195 0.99664 0.96407 0.97501 1.22991 1.00859 0.99820 0.95269 1.22069 0.99874 0.85894 0.89943 0.88794 1.55285 1.24883 1.40271 1.65484 1.04215 0.73656 0.73071 0.76675 1.93532 1.85823 1.54258 1.64777 1.93532 1.76666 1.47867 1.80108 1.30550 1.06898 1.13226 1.23228 1.21315 0.91364 1.00990 1.00897 1.18943 0.94659 0.95403 0.91579 1.21725 0.98406 1.44487 0.94652 0.92205 1.25926 1.03127 0.95501 0.94926 1.70061 1.38808 1.48391 0.99641 0.85542 0.79233 0.79073 0.77484 1.19221 1.20580 1.19272 1.22703 0.95778 0.99318 0.98048 0.92399 0.92223 0.92392 0.91452 0.90552 0.89799 0.91284 0.73718 0.83850 0.83544 0.91621 0.91593 0.97825 0.97895 0.92617 0.91016 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.84 71.98 0.64 -0.81 16 2 C -0.10 -1.19 3.50 -10.07 -0.04 -1.23 16 3 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.12 -1.61 6.46 31.32 0.20 -1.41 16 5 C -0.15 -2.38 6.51 31.67 0.21 -2.17 16 6 C 0.13 2.30 3.46 46.28 0.16 2.46 16 7 H 0.09 1.85 7.57 -2.39 -0.02 1.83 16 8 N -1.10 -21.64 5.48 -164.05 -0.90 -22.53 16 9 S 2.63 74.91 5.43 -56.49 -0.31 74.61 16 10 O -0.99 -34.31 18.08 -127.65 -2.31 -36.61 16 11 O -0.99 -34.45 17.45 -127.65 -2.23 -36.68 16 12 C -0.61 -18.19 6.07 71.99 0.44 -17.75 16 13 C -0.11 -4.34 5.16 30.60 0.16 -4.18 16 14 C 0.03 1.67 4.97 29.85 0.15 1.82 16 15 C -0.55 -31.67 9.11 25.60 0.23 -31.44 16 16 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 17 C 0.00 0.20 5.46 84.65 0.46 0.66 16 18 N -0.93 -55.71 13.29 21.45 0.28 -55.43 16 19 Si 0.96 44.24 29.54 68.60 2.03 46.26 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 C -0.12 -1.68 6.01 31.67 0.19 -1.49 16 24 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 26 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 27 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 28 H 0.08 0.91 7.67 -2.39 -0.02 0.90 16 29 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.07 1.18 7.58 -2.39 -0.02 1.17 16 31 H 0.43 6.54 8.78 -96.75 -0.85 5.69 16 32 H 0.14 3.77 7.58 -2.39 -0.02 3.76 16 33 H 0.15 3.85 8.14 -2.39 -0.02 3.83 16 34 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.00 0.14 8.14 -2.39 -0.02 0.13 16 38 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 1.02 7.78 -2.38 -0.02 1.00 16 Total: -1.00 -72.83 336.86 -0.48 -73.30 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.15 Total: 12.62 kcal Atomic # 6 Polarization: -58.33 SS G_CDS: 2.80 Total: -55.54 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -0.61 Total: -77.96 kcal Atomic # 8 Polarization: -68.76 SS G_CDS: -4.54 Total: -73.30 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 74.91 SS G_CDS: -0.31 Total: 74.61 kcal Total: -72.83 -0.48 -73.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444221204.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.514 kcal (2) G-P(sol) polarization free energy of solvation -72.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds