Wall clock time and date at job start Mon Mar 30 2020 02:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46621 * 2 1 4 4 N 1.46502 * 109.46660 * 119.99475 * 2 1 3 5 5 S 1.65600 * 119.99876 * 265.00171 * 4 2 1 6 6 O 1.42105 * 104.27894 * 181.07740 * 5 4 2 7 7 O 1.42108 * 104.28039 * 308.93058 * 5 4 2 8 8 C 1.81394 * 104.45210 * 65.00488 * 5 4 2 9 9 C 1.53001 * 109.47572 * 180.02562 * 8 5 4 10 10 C 1.53001 * 109.46600 * 299.99857 * 9 8 5 11 11 C 1.52998 * 109.47116 * 59.99390 * 9 8 5 12 12 C 1.50695 * 109.47265 * 179.97438 * 9 8 5 13 13 H 1.08000 * 120.00350 * 359.97438 * 12 9 8 14 14 C 1.37875 * 119.99900 * 179.97438 * 12 9 8 15 15 N 1.31518 * 120.00106 * 0.02562 * 14 12 9 16 16 Si 1.86807 * 120.00069 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.47141 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47216 * 120.00176 * 16 14 12 19 19 H 1.48501 * 109.47073 * 240.00032 * 16 14 12 20 20 C 1.52989 * 109.47436 * 239.99453 * 2 1 3 21 21 C 1.53000 * 117.50008 * 128.62226 * 20 2 1 22 22 C 1.52997 * 60.00347 * 252.51154 * 21 20 2 23 23 H 1.09006 * 109.46996 * 60.00435 * 1 2 3 24 24 H 1.09001 * 109.47295 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47711 * 300.00528 * 1 2 3 26 26 H 0.96991 * 120.00238 * 85.00953 * 4 2 1 27 27 H 1.09002 * 109.46979 * 299.99912 * 8 5 4 28 28 H 1.08999 * 109.47652 * 59.99616 * 8 5 4 29 29 H 1.08999 * 109.47218 * 60.00391 * 10 9 8 30 30 H 1.09001 * 109.46616 * 179.97438 * 10 9 8 31 31 H 1.08993 * 109.47488 * 299.99427 * 10 9 8 32 32 H 1.09002 * 109.46874 * 60.00559 * 11 9 8 33 33 H 1.09001 * 109.47186 * 180.02562 * 11 9 8 34 34 H 1.08999 * 109.47777 * 300.00268 * 11 9 8 35 35 H 0.97002 * 120.00073 * 179.97438 * 15 14 12 36 36 H 1.09004 * 115.56709 * 274.30959 * 20 2 1 37 37 H 1.09002 * 117.49696 * 0.02562 * 21 20 2 38 38 H 1.09002 * 117.50343 * 145.02258 * 21 20 2 39 39 H 1.08999 * 117.49685 * 252.51237 * 22 21 20 40 40 H 1.08999 * 117.52022 * 107.47599 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0182 -0.6905 1.1963 5 16 2.4119 0.1774 2.5505 6 8 2.8604 -0.8026 3.4768 7 8 3.2873 1.1909 2.0751 8 6 0.8405 0.8991 3.0985 9 6 1.0750 1.7354 4.3581 10 6 1.6396 0.8427 5.4650 11 6 2.0703 2.8554 4.0487 12 6 -0.2304 2.3354 4.8128 13 1 -1.1366 2.1402 4.2587 14 6 -0.2679 3.1336 5.9364 15 7 0.8357 3.3717 6.6110 16 14 -1.8862 3.8768 6.5006 17 1 -2.9714 3.4590 5.5772 18 1 -2.1960 3.4041 7.8738 19 1 -1.7777 5.3579 6.4998 20 6 2.0400 -0.7213 -1.2491 21 6 3.0742 0.0050 -2.1115 22 6 1.6358 -0.1496 -2.6095 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 2.1109 -1.6560 1.1951 27 1 0.4385 1.5354 2.3100 28 1 0.1313 0.1012 3.3185 29 1 2.5840 0.4091 5.1358 30 1 1.8071 1.4386 6.3622 31 1 0.9306 0.0448 5.6854 32 1 1.6680 3.4913 3.2601 33 1 2.2376 3.4509 4.9462 34 1 3.0146 2.4218 3.7195 35 1 0.8094 3.9336 7.4013 36 1 2.1272 -1.8045 -1.1641 37 1 3.3915 0.9966 -1.7888 38 1 3.8417 -0.6002 -2.5940 39 1 1.4570 -0.8568 -3.4195 40 1 1.0062 0.7401 -2.6146 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451009452.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:21 Heat of formation + Delta-G solvation = -58.961383 kcal Electronic energy + Delta-G solvation = -20727.873666 eV Core-core repulsion = 17670.453997 eV Total energy + Delta-G solvation = -3057.419669 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.42105 -36.48111 -36.27008 -35.27623 -34.50528 -31.67804 -29.45769 -26.70225 -25.70734 -25.22338 -24.02804 -22.40150 -20.58300 -19.54146 -18.77537 -17.29298 -16.71999 -15.94499 -15.34204 -15.06823 -14.76970 -14.48232 -14.22329 -13.58702 -13.20648 -13.01215 -12.61183 -12.47550 -12.30677 -12.05359 -11.76993 -11.49209 -11.41824 -11.11337 -11.07829 -10.97764 -10.86515 -10.69611 -10.53429 -10.39160 -10.26982 -10.23138 -10.04845 -9.64509 -9.62126 -9.20603 -8.66125 -8.40266 -6.03302 -4.15213 0.89595 3.19835 3.24815 3.33361 3.35762 3.68352 4.30717 4.38517 4.46907 4.75377 4.79025 4.89654 5.02542 5.15260 5.22201 5.36492 5.47500 5.50199 5.63267 5.72152 5.76376 5.81533 5.95089 6.00396 6.15890 6.28768 6.42202 6.71279 6.80564 6.91938 7.03769 7.19163 7.32382 7.51211 7.68157 7.98643 8.10196 8.33341 8.83518 9.50271 10.98026 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.027329 B = 0.005363 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.290143 B = 5219.455446 C = 5714.747418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.175 3.825 3 H 0.092 0.908 4 N -1.123 6.123 5 S 2.593 3.407 6 O -0.966 6.966 7 O -0.965 6.965 8 C -0.583 4.583 9 C 0.081 3.919 10 C -0.164 4.164 11 C -0.164 4.164 12 C -0.501 4.501 13 H 0.059 0.941 14 C 0.064 3.936 15 N -0.883 5.883 16 Si 0.895 3.105 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.155 4.155 21 C -0.179 4.179 22 C -0.175 4.175 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.410 0.590 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.027 0.973 30 H 0.095 0.905 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.095 0.905 34 H 0.028 0.972 35 H 0.262 0.738 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.042 -7.026 -14.560 16.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.067 3.933 3 H 0.110 0.890 4 N -0.879 5.879 5 S 2.691 3.309 6 O -0.957 6.957 7 O -0.955 6.955 8 C -0.717 4.717 9 C 0.079 3.921 10 C -0.221 4.221 11 C -0.221 4.221 12 C -0.540 4.540 13 H 0.077 0.923 14 C -0.138 4.138 15 N -0.522 5.522 16 Si 0.723 3.277 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.175 4.175 21 C -0.216 4.216 22 C -0.213 4.213 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.243 0.757 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.046 0.954 30 H 0.113 0.887 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.113 0.887 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.126 0.874 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.913 -6.670 -14.050 15.580 hybrid contribution -1.598 0.002 0.199 1.611 sum -0.685 -6.667 -13.851 15.388 Atomic orbital electron populations 1.22459 0.95122 1.03066 1.03081 1.20314 0.93633 0.96039 0.83286 0.89010 1.55891 1.84466 1.19473 1.28043 1.05604 0.78360 0.74381 0.72564 1.93550 1.80621 1.59730 1.61767 1.93538 1.62541 1.59816 1.79568 1.30629 1.18947 1.11406 1.10670 1.17935 0.96890 0.90850 0.86398 1.22270 0.97567 0.98893 1.03402 1.22273 0.96319 1.00641 1.02895 1.20976 0.92662 1.29708 1.10642 0.92271 1.24941 0.96439 0.96084 0.96293 1.69816 1.26264 1.37897 1.18183 0.86488 0.83676 0.78935 0.78584 1.19861 1.20973 1.20964 1.22466 1.04418 0.99464 0.91140 1.23084 0.92396 1.02531 1.03554 1.22963 0.98419 1.03337 0.96549 0.91317 0.91766 0.91283 0.75667 0.86379 0.86232 0.95393 0.88665 0.94478 0.94510 0.88681 0.95312 0.92816 0.87400 0.88212 0.88824 0.88750 0.88430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 9.32 37.16 0.35 -1.53 16 2 C 0.17 2.10 3.04 -67.94 -0.21 1.89 16 3 H 0.09 1.20 7.24 -51.93 -0.38 0.82 16 4 N -1.12 -15.33 5.36 -4.89 -0.03 -15.36 16 5 S 2.59 48.14 4.47 -107.50 -0.48 47.66 16 6 O -0.97 -20.47 15.70 -57.54 -0.90 -21.37 16 7 O -0.96 -20.34 15.01 -57.54 -0.86 -21.20 16 8 C -0.58 -11.26 4.16 37.16 0.15 -11.10 16 9 C 0.08 1.97 0.52 -155.66 -0.08 1.89 16 10 C -0.16 -4.05 7.78 37.16 0.29 -3.76 16 11 C -0.16 -4.02 7.77 37.16 0.29 -3.73 16 12 C -0.50 -13.05 8.01 -34.44 -0.28 -13.33 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 15 N -0.88 -24.09 9.35 55.43 0.52 -23.57 16 16 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C -0.16 -1.56 5.38 -90.62 -0.49 -2.05 16 21 C -0.18 -1.74 10.18 -26.73 -0.27 -2.01 16 22 C -0.17 -1.47 9.74 -26.73 -0.26 -1.73 16 23 H 0.07 0.61 7.29 -51.93 -0.38 0.23 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.79 5.78 -51.93 -0.30 0.49 16 26 H 0.41 4.73 8.78 -34.47 -0.30 4.43 16 27 H 0.12 2.05 6.77 -51.92 -0.35 1.70 16 28 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 29 H 0.03 0.66 5.47 -51.93 -0.28 0.37 16 30 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 31 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 34 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16 35 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 36 H 0.11 0.98 8.12 -51.93 -0.42 0.56 16 37 H 0.10 1.05 8.05 -51.93 -0.42 0.63 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.77 7.61 -51.93 -0.39 0.38 16 LS Contribution 319.40 15.07 4.81 4.81 Total: -1.00 -31.23 319.40 -8.78 -40.00 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -6.22 Total: 7.35 kcal Atomic # 6 Polarization: -33.26 SS G_CDS: -0.60 Total: -33.85 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.49 Total: -38.93 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -1.77 Total: -42.58 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 48.14 SS G_CDS: -0.48 Total: 47.66 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.23 -8.78 -40.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451009452.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.958 kcal (2) G-P(sol) polarization free energy of solvation -31.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds