Wall clock time and date at job start Mon Mar 30 2020 02:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46621 * 2 1 4 4 N 1.46502 * 109.46660 * 119.99475 * 2 1 3 5 5 S 1.65600 * 119.99876 * 265.00171 * 4 2 1 6 6 O 1.42105 * 104.27894 * 181.07740 * 5 4 2 7 7 O 1.42108 * 104.28039 * 308.93058 * 5 4 2 8 8 C 1.81394 * 104.45210 * 65.00488 * 5 4 2 9 9 C 1.53001 * 109.47572 * 180.02562 * 8 5 4 10 10 C 1.53001 * 109.46600 * 299.99857 * 9 8 5 11 11 C 1.52998 * 109.47116 * 59.99390 * 9 8 5 12 12 C 1.50695 * 109.47265 * 179.97438 * 9 8 5 13 13 H 1.08000 * 120.00350 * 359.97438 * 12 9 8 14 14 C 1.37875 * 119.99900 * 179.97438 * 12 9 8 15 15 N 1.31518 * 120.00106 * 0.02562 * 14 12 9 16 16 Si 1.86807 * 120.00069 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.47141 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47216 * 120.00176 * 16 14 12 19 19 H 1.48501 * 109.47073 * 240.00032 * 16 14 12 20 20 C 1.52989 * 109.47436 * 239.99453 * 2 1 3 21 21 C 1.53000 * 117.50008 * 128.62226 * 20 2 1 22 22 C 1.52997 * 60.00347 * 252.51154 * 21 20 2 23 23 H 1.09006 * 109.46996 * 60.00435 * 1 2 3 24 24 H 1.09001 * 109.47295 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47711 * 300.00528 * 1 2 3 26 26 H 0.96991 * 120.00238 * 85.00953 * 4 2 1 27 27 H 1.09002 * 109.46979 * 299.99912 * 8 5 4 28 28 H 1.08999 * 109.47652 * 59.99616 * 8 5 4 29 29 H 1.08999 * 109.47218 * 60.00391 * 10 9 8 30 30 H 1.09001 * 109.46616 * 179.97438 * 10 9 8 31 31 H 1.08993 * 109.47488 * 299.99427 * 10 9 8 32 32 H 1.09002 * 109.46874 * 60.00559 * 11 9 8 33 33 H 1.09001 * 109.47186 * 180.02562 * 11 9 8 34 34 H 1.08999 * 109.47777 * 300.00268 * 11 9 8 35 35 H 0.97002 * 120.00073 * 179.97438 * 15 14 12 36 36 H 1.09004 * 115.56709 * 274.30959 * 20 2 1 37 37 H 1.09002 * 117.49696 * 0.02562 * 21 20 2 38 38 H 1.09002 * 117.50343 * 145.02258 * 21 20 2 39 39 H 1.08999 * 117.49685 * 252.51237 * 22 21 20 40 40 H 1.08999 * 117.52022 * 107.47599 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0182 -0.6905 1.1963 5 16 2.4119 0.1774 2.5505 6 8 2.8604 -0.8026 3.4768 7 8 3.2873 1.1909 2.0751 8 6 0.8405 0.8991 3.0985 9 6 1.0750 1.7354 4.3581 10 6 1.6396 0.8427 5.4650 11 6 2.0703 2.8554 4.0487 12 6 -0.2304 2.3354 4.8128 13 1 -1.1366 2.1402 4.2587 14 6 -0.2679 3.1336 5.9364 15 7 0.8357 3.3717 6.6110 16 14 -1.8862 3.8768 6.5006 17 1 -2.9714 3.4590 5.5772 18 1 -2.1960 3.4041 7.8738 19 1 -1.7777 5.3579 6.4998 20 6 2.0400 -0.7213 -1.2491 21 6 3.0742 0.0050 -2.1115 22 6 1.6358 -0.1496 -2.6095 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 2.1109 -1.6560 1.1951 27 1 0.4385 1.5354 2.3100 28 1 0.1313 0.1012 3.3185 29 1 2.5840 0.4091 5.1358 30 1 1.8071 1.4386 6.3622 31 1 0.9306 0.0448 5.6854 32 1 1.6680 3.4913 3.2601 33 1 2.2376 3.4509 4.9462 34 1 3.0146 2.4218 3.7195 35 1 0.8094 3.9336 7.4013 36 1 2.1272 -1.8045 -1.1641 37 1 3.3915 0.9966 -1.7888 38 1 3.8417 -0.6002 -2.5940 39 1 1.4570 -0.8568 -3.4195 40 1 1.0062 0.7401 -2.6146 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451009452.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:20 Heat of formation + Delta-G solvation = -79.543534 kcal Electronic energy + Delta-G solvation = -20728.766175 eV Core-core repulsion = 17670.453997 eV Total energy + Delta-G solvation = -3058.312178 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.26045 -38.12793 -38.05738 -36.88575 -35.47372 -33.63570 -30.42896 -28.37515 -27.68880 -27.23875 -24.88713 -23.09811 -21.54696 -21.23945 -20.24865 -18.76599 -17.84219 -17.73830 -16.91654 -16.62498 -16.38711 -15.43367 -15.19804 -15.00359 -14.65892 -14.49283 -14.40325 -13.84863 -13.58554 -13.40541 -13.08234 -13.04098 -12.90244 -12.75880 -12.62371 -12.48776 -12.23124 -12.18509 -12.11049 -11.95267 -11.74653 -11.55934 -11.40186 -11.29073 -11.01353 -10.61063 -10.41464 -10.27503 -8.02211 -6.20703 -0.59253 1.43630 1.46765 1.56187 1.90141 2.44912 2.86381 2.93696 3.20262 3.33509 3.67738 3.95187 4.03148 4.10883 4.19820 4.21473 4.30974 4.52571 4.59518 4.67126 4.83680 4.86046 4.87487 4.93729 5.02392 5.07994 5.08589 5.15407 5.32139 5.36802 5.39299 5.46303 5.51256 5.65745 5.97538 6.11964 6.18368 6.34815 6.84394 7.47701 8.97907 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.027329 B = 0.005363 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.290143 B = 5219.455446 C = 5714.747418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.166 3.834 3 H 0.078 0.922 4 N -1.106 6.106 5 S 2.611 3.389 6 O -0.995 6.995 7 O -0.993 6.993 8 C -0.584 4.584 9 C 0.069 3.931 10 C -0.160 4.160 11 C -0.160 4.160 12 C -0.514 4.514 13 H 0.064 0.936 14 C 0.017 3.983 15 N -0.909 5.909 16 Si 0.955 3.045 17 H -0.264 1.264 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.164 4.164 21 C -0.194 4.194 22 C -0.156 4.156 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.423 0.577 27 H 0.137 0.863 28 H 0.138 0.862 29 H 0.031 0.969 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.031 0.969 35 H 0.261 0.739 36 H 0.121 0.879 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.113 0.887 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.542 -7.940 -16.484 18.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.059 3.941 3 H 0.096 0.904 4 N -0.867 5.867 5 S 2.709 3.291 6 O -0.985 6.985 7 O -0.983 6.983 8 C -0.717 4.717 9 C 0.067 3.933 10 C -0.218 4.218 11 C -0.217 4.217 12 C -0.553 4.553 13 H 0.083 0.917 14 C -0.182 4.182 15 N -0.548 5.548 16 Si 0.781 3.219 17 H -0.189 1.189 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.184 4.184 21 C -0.231 4.231 22 C -0.193 4.193 23 H 0.106 0.894 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.259 0.741 27 H 0.155 0.845 28 H 0.157 0.843 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.139 0.861 37 H 0.103 0.897 38 H 0.122 0.878 39 H 0.132 0.868 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.594 -7.591 -15.975 17.697 hybrid contribution -1.099 0.267 0.731 1.347 sum -1.693 -7.323 -15.245 16.997 Atomic orbital electron populations 1.22473 0.93641 1.04134 1.03499 1.20546 0.94854 0.95464 0.83214 0.90441 1.55429 1.84272 1.19926 1.27026 1.04751 0.77730 0.73802 0.72864 1.93502 1.81171 1.60302 1.63555 1.93500 1.63490 1.61153 1.80124 1.30554 1.20233 1.11818 1.09084 1.17932 0.95972 0.91163 0.88271 1.22206 0.97970 0.98738 1.02877 1.22203 0.96930 1.00820 1.01784 1.21315 0.93575 1.29672 1.10735 0.91744 1.25682 0.99222 0.96699 0.96626 1.69958 1.27964 1.38403 1.18446 0.85558 0.80419 0.77915 0.78027 1.18858 1.21082 1.21017 1.22460 1.05102 0.99933 0.90865 1.23152 0.93628 1.02056 1.04282 1.23069 0.97010 1.03552 0.95716 0.89448 0.90390 0.92350 0.74102 0.84464 0.84349 0.95063 0.91088 0.94066 0.94045 0.91130 0.94980 0.92987 0.86142 0.89659 0.87833 0.86834 0.87909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.24 9.32 71.98 0.67 -2.57 16 2 C 0.17 3.64 3.04 44.99 0.14 3.77 16 3 H 0.08 1.93 7.24 -2.39 -0.02 1.92 16 4 N -1.11 -28.21 5.36 -169.40 -0.91 -29.12 16 5 S 2.61 94.84 4.47 -56.49 -0.25 94.59 16 6 O -1.00 -41.64 15.70 -127.65 -2.00 -43.65 16 7 O -0.99 -41.68 15.01 -127.65 -1.92 -43.59 16 8 C -0.58 -21.81 4.16 71.98 0.30 -21.51 16 9 C 0.07 3.30 0.52 -52.93 -0.03 3.27 16 10 C -0.16 -8.00 7.78 71.98 0.56 -7.44 16 11 C -0.16 -7.94 7.77 71.98 0.56 -7.38 16 12 C -0.51 -26.49 8.01 25.60 0.21 -26.29 16 13 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 14 C 0.02 0.89 5.15 84.65 0.44 1.33 16 15 N -0.91 -50.36 9.35 21.45 0.20 -50.16 16 16 Si 0.95 41.91 29.54 68.60 2.03 43.94 16 17 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 C -0.16 -2.86 5.38 -10.80 -0.06 -2.92 16 21 C -0.19 -3.43 10.18 30.59 0.31 -3.12 16 22 C -0.16 -2.13 9.74 30.60 0.30 -1.83 16 23 H 0.09 1.26 7.29 -2.38 -0.02 1.24 16 24 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 25 H 0.06 1.19 5.78 -2.39 -0.01 1.17 16 26 H 0.42 8.83 8.78 -96.76 -0.85 7.98 16 27 H 0.14 4.54 6.77 -2.39 -0.02 4.52 16 28 H 0.14 4.59 8.14 -2.39 -0.02 4.57 16 29 H 0.03 1.49 5.47 -2.39 -0.01 1.48 16 30 H 0.07 3.87 6.07 -2.39 -0.01 3.86 16 31 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 34 H 0.03 1.53 5.46 -2.39 -0.01 1.52 16 35 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 36 H 0.12 1.80 8.12 -2.38 -0.02 1.78 16 37 H 0.08 1.74 8.05 -2.39 -0.02 1.72 16 38 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.10 1.31 7.61 -2.39 -0.02 1.29 16 Total: -1.00 -66.44 319.40 0.72 -65.72 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 0.19 Total: 26.96 kcal Atomic # 6 Polarization: -68.08 SS G_CDS: 3.39 Total: -64.69 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -0.71 Total: -79.28 kcal Atomic # 8 Polarization: -83.32 SS G_CDS: -3.92 Total: -87.24 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: 94.84 SS G_CDS: -0.25 Total: 94.59 kcal Total: -66.44 0.72 -65.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451009452.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.822 kcal (2) G-P(sol) polarization free energy of solvation -66.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds